Click here to switch to the map view.

The map label for this gene is yebA [H]

Identifier: 189025927

GI number: 189025927

Start: 768787

End: 769323

Strand: Reverse

Name: yebA [H]

Synonym: TPASS_0702

Alternate gene names: 189025927

Gene position: 769323-768787 (Counterclockwise)

Preceding gene: 189025928

Following gene: 189025926

Centisome position: 67.52

GC content: 60.34

Gene sequence:

>537_bases
GTGACCTCCCCTCAGACTCGGGCCTTTTTAGGGCCGTTTCGACAACCGGTGGAATCTCGACGGTGTACGTCGGTGTTTGG
GCAGGCGCGCGTCTTTGTGTACACCGACGGGACGCGCTCTGCGCAGTACCACTGGGGGAAGGACTTTGGAGTTCCGGTGG
GAACGGCGGTGTATGCAGCAGGTACAGGGAGGGTGGTACTCGCAGAGCAACGGACAACCACGGGTTGGAGCGTGGTACTG
GAGCACGCCCCGGGGCTGTACACAGCGTACTACCATCTGAACGAGCTGCTGGTGAAAAAAGATACGTACGTGTCAACGGG
CACGCTCATTGCACGCAGCGGAACCACCGGGTTCTCCACCGGGCCTCACGTACACTGGGAAGCACGGATAAATAGCACGC
CGATAGACCCTGAGTGCCTACTAGCCCCGCCATTCCTTACACACCTGCCTAAGAACGCACTACGGAAGCTACAACCTACA
GGCGAGACGCAGCCGGGCACGCCGCTTCCCAAAGACACAAACGGCCTACCGGGGTGA

Upstream 100 bases:

>100_bases
CCCGTGAGGAATTACGCTTAGATCGCAAGAATACCGCCATTGCGCAGGACAAGAGTGAGCGCAAAAAGGTGCAGCGTGAC
GCCTGAAGGCGCTCTGGACC

Downstream 100 bases:

>100_bases
GCTGGCCAGCTGTTCCTCGGGCAACCCGGACTCGAACCGGGGACCCCAAGTCCCCCAGACTTGTACGCTAACCTACTGCG
CCATTGCCCGCGGTGCGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MTSPQTRAFLGPFRQPVESRRCTSVFGQARVFVYTDGTRSAQYHWGKDFGVPVGTAVYAAGTGRVVLAEQRTTTGWSVVL
EHAPGLYTAYYHLNELLVKKDTYVSTGTLIARSGTTGFSTGPHVHWEARINSTPIDPECLLAPPFLTHLPKNALRKLQPT
GETQPGTPLPKDTNGLPG

Sequences:

>Translated_178_residues
MTSPQTRAFLGPFRQPVESRRCTSVFGQARVFVYTDGTRSAQYHWGKDFGVPVGTAVYAAGTGRVVLAEQRTTTGWSVVL
EHAPGLYTAYYHLNELLVKKDTYVSTGTLIARSGTTGFSTGPHVHWEARINSTPIDPECLLAPPFLTHLPKNALRKLQPT
GETQPGTPLPKDTNGLPG
>Mature_177_residues
TSPQTRAFLGPFRQPVESRRCTSVFGQARVFVYTDGTRSAQYHWGKDFGVPVGTAVYAAGTGRVVLAEQRTTTGWSVVLE
HAPGLYTAYYHLNELLVKKDTYVSTGTLIARSGTTGFSTGPHVHWEARINSTPIDPECLLAPPFLTHLPKNALRKLQPTG
ETQPGTPLPKDTNGLPG

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=94, Percent_Identity=43.6170212765958, Blast_Score=81, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 19381; Mature: 19250

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPQTRAFLGPFRQPVESRRCTSVFGQARVFVYTDGTRSAQYHWGKDFGVPVGTAVYAA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEC
GTGRVVLAEQRTTTGWSVVLEHAPGLYTAYYHLNELLVKKDTYVSTGTLIARSGTTGFST
CCCCEEEECCCCCCCCEEEEECCCCEEEHHHHHHHHHHCCCCEEECCEEEEECCCCCCCC
GPHVHWEARINSTPIDPECLLAPPFLTHLPKNALRKLQPTGETQPGTPLPKDTNGLPG
CCEEEEEEEECCCCCCCCEEECCHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TSPQTRAFLGPFRQPVESRRCTSVFGQARVFVYTDGTRSAQYHWGKDFGVPVGTAVYAA
CCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEC
GTGRVVLAEQRTTTGWSVVLEHAPGLYTAYYHLNELLVKKDTYVSTGTLIARSGTTGFST
CCCCEEEECCCCCCCCEEEEECCCCEEEHHHHHHHHHHCCCCEEECCEEEEECCCCCCCC
GPHVHWEARINSTPIDPECLLAPPFLTHLPKNALRKLQPTGETQPGTPLPKDTNGLPG
CCEEEEEEEECCCCCCCCEEECCHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]