| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189025903
Identifier: 189025903
GI number: 189025903
Start: 744079
End: 745002
Strand: Direct
Name: 189025903
Synonym: TPASS_0678
Alternate gene names: NA
Gene position: 744079-745002 (Clockwise)
Preceding gene: 189025900
Following gene: 189025904
Centisome position: 65.3
GC content: 59.85
Gene sequence:
>924_bases ATGGAAGCTTATCAGGCGGAGATTATTCGCAGGTTTGGACGCGTGCGGCGTGCGCGCGGCTTTTACCTATACACTGAGCG TGGGGTTCGCATCACGGATTTATTCCTTGACGGCGGCGCTTCTATTCTTGGACGGAACGCCAGCCGCGCGCGCCTGGACT TTAAGCGTTATCTTAGCCGCGGGCTGTGGGGTCCCCTACCCACCTGTGCTTCTGCGCAGCTGCAGCAGGCACTACGCACG TGTTTTCCTGCGCACGAGGTGCGCTACTACGCACATGCCGAACGCGCGCAGGAAGTGTGTGCGCGTTTTCTCAACCTTGC TTGCGGCGCCGCACCCTGCGAGGTGCCAGTGTGGCGCCCCTGCGCACCGTGCGTCCCGCAAACCGATGTCTTTTTGGTTG TGCCGCCGTTTCCTTCTCCTGCACCGTTTGTTGCGCTCCGTGCCCACTGTGCCGCGCGCGCCCCTGCGGGGGACGTGCTC TTTGCTCCGATTGCGCAGGCGATTGCTCGTGCCTTTTGGGACTTAGCGCGCGTGGGTTCCCTTTCTCAGCCCGCACGCGC CATGCCTCACGCTCTGTTAGACTCCTCACACACCACGCAGGAAGACGCGGTCCCTGCGCTGCCACACACGAAAAAACGGC GCAGAGGTCTGAACCGCGTGCGCCGCGCACAAAAATGCGCGCGGCAAGAGCGCGACCGCGCACAGCTTATAACGCTTATG AGTACATGGTGGCGCACGGAAGGGCCTTATCTTTTTCCCACTGTTTCTGAAGAACGGTATGAGGCATTGTTCGCACGTGC GCTTGACGCGCATATCCTGCTCTCCCCCCTGTACACTGAACCCTCAGTACTCCCTACGCTCGAGCACTATACCCAGCTAT GCACTTTTTTTCTTCAAGAACAGGAAAAGGAACACCACGAATGA
Upstream 100 bases:
>100_bases ATCGTCCATTTCGGGGATAGAAAGGTTTGACGAGGCGTTGCCCGCAGGGCGGGGTATGCGCAGGGTGCACAGCGGGGGAG TGTTCCCCTAAGAGAACAGC
Downstream 100 bases:
>100_bases ATGAATTTCTCTCTCTGCTCTCTCGAGCACAGACTATTTTGCTGATGTTACGCCTAGCGGTAACGGCGGTTGCTGTGTTC CTCGCCATTGTCGCGTGGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 307; Mature: 307
Protein sequence:
>307_residues MEAYQAEIIRRFGRVRRARGFYLYTERGVRITDLFLDGGASILGRNASRARLDFKRYLSRGLWGPLPTCASAQLQQALRT CFPAHEVRYYAHAERAQEVCARFLNLACGAAPCEVPVWRPCAPCVPQTDVFLVVPPFPSPAPFVALRAHCAARAPAGDVL FAPIAQAIARAFWDLARVGSLSQPARAMPHALLDSSHTTQEDAVPALPHTKKRRRGLNRVRRAQKCARQERDRAQLITLM STWWRTEGPYLFPTVSEERYEALFARALDAHILLSPLYTEPSVLPTLEHYTQLCTFFLQEQEKEHHE
Sequences:
>Translated_307_residues MEAYQAEIIRRFGRVRRARGFYLYTERGVRITDLFLDGGASILGRNASRARLDFKRYLSRGLWGPLPTCASAQLQQALRT CFPAHEVRYYAHAERAQEVCARFLNLACGAAPCEVPVWRPCAPCVPQTDVFLVVPPFPSPAPFVALRAHCAARAPAGDVL FAPIAQAIARAFWDLARVGSLSQPARAMPHALLDSSHTTQEDAVPALPHTKKRRRGLNRVRRAQKCARQERDRAQLITLM STWWRTEGPYLFPTVSEERYEALFARALDAHILLSPLYTEPSVLPTLEHYTQLCTFFLQEQEKEHHE >Mature_307_residues MEAYQAEIIRRFGRVRRARGFYLYTERGVRITDLFLDGGASILGRNASRARLDFKRYLSRGLWGPLPTCASAQLQQALRT CFPAHEVRYYAHAERAQEVCARFLNLACGAAPCEVPVWRPCAPCVPQTDVFLVVPPFPSPAPFVALRAHCAARAPAGDVL FAPIAQAIARAFWDLARVGSLSQPARAMPHALLDSSHTTQEDAVPALPHTKKRRRGLNRVRRAQKCARQERDRAQLITLM STWWRTEGPYLFPTVSEERYEALFARALDAHILLSPLYTEPSVLPTLEHYTQLCTFFLQEQEKEHHE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To B.burgdorferi BB0340
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y678_TREPA (O83684)
Other databases:
- EMBL: AE000520 - PIR: F71294 - RefSeq: NP_219115.1 - ProteinModelPortal: O83684 - IntAct: O83684 - GeneID: 2611258 - GenomeReviews: AE000520_GR - KEGG: tpa:TP0678 - NMPDR: fig|243276.1.peg.674 - TIGR: TP_0678 - HOGENOM: HBG251034 - OMA: YIMENTW - ProtClustDB: CLSK491142 - BioCyc: TPAL243276:TP_0678-MONOMER - InterPro: IPR015422 - Gene3D: G3DSA:3.90.1150.10
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34764; Mature: 34764
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEAYQAEIIRRFGRVRRARGFYLYTERGVRITDLFLDGGASILGRNASRARLDFKRYLSR CCHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHHHH GLWGPLPTCASAQLQQALRTCFPAHEVRYYAHAERAQEVCARFLNLACGAAPCEVPVWRP CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC CAPCVPQTDVFLVVPPFPSPAPFVALRAHCAARAPAGDVLFAPIAQAIARAFWDLARVGS CCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC LSQPARAMPHALLDSSHTTQEDAVPALPHTKKRRRGLNRVRRAQKCARQERDRAQLITLM CCCHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH STWWRTEGPYLFPTVSEERYEALFARALDAHILLSPLYTEPSVLPTLEHYTQLCTFFLQE HHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH QEKEHHE HHHHCCC >Mature Secondary Structure MEAYQAEIIRRFGRVRRARGFYLYTERGVRITDLFLDGGASILGRNASRARLDFKRYLSR CCHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHHHH GLWGPLPTCASAQLQQALRTCFPAHEVRYYAHAERAQEVCARFLNLACGAAPCEVPVWRP CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC CAPCVPQTDVFLVVPPFPSPAPFVALRAHCAARAPAGDVLFAPIAQAIARAFWDLARVGS CCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC LSQPARAMPHALLDSSHTTQEDAVPALPHTKKRRRGLNRVRRAQKCARQERDRAQLITLM CCCHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH STWWRTEGPYLFPTVSEERYEALFARALDAHILLSPLYTEPSVLPTLEHYTQLCTFFLQE HHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH QEKEHHE HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9665876