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The map label for this gene is arp [H]

Identifier: 189025666

GI number: 189025666

Start: 461713

End: 463527

Strand: Direct

Name: arp [H]

Synonym: TPASS_0433

Alternate gene names: 189025666

Gene position: 461713-463527 (Clockwise)

Preceding gene: 189025665

Following gene: 189025670

Centisome position: 40.52

GC content: 61.19

Gene sequence:

>1815_bases
ATGATTAAACGCCACATGTTCGCAAAAAGGGGTGTCAAAGGAAGATCTTACCTGGTTAGGGTGAACACTGCGTTCTTAGT
GCTTTGTGTTGCTTCTGTCACGCCGCTTTGGGCTGTGTGGGAAGGGAATGCAGAAATTGGCCCCCAGGGAAGTTTTCTGC
AGGACGGCATGTTTGTGCGCAGTGACATGTTCCCCAAAAACACTGCTGTTGAAATTAGCAACTTAGAAAAGAATGCCAAG
GCTCAGGCAGTGGTTATTGGGCACGCAGGGATCCCCGGTCTTCTAGTTAGCCTTGCACCCGCTGCTGCAGCACAGCTTGG
GATTGGCGTATACCAAGCTGTGCGTGTACGCGTACGTACCTTGGGTACCGTGCGCGGTGGGTCTCAAACAAGTCAGGACG
GACTGTCCCTTGCATCTTTGCCGTCCCGTGTGCCTGCGCGCCCCGCGCAGCGTGATCCTCTGTCATCCCCGCCGGCAGGT
CACACTGTACCGGAATATCGCGATACGGTTATTTTCGATGACCCGCGTTTGGTTTCCCCTTTGTCTCGTGAGGTGGAGGA
CGCGCCGAAGGTAGTGGAGCCGGCCTCTGAGCGTGAGGGAGGGGAGCGTGAGGTGGAGGACGCGCCGAAGGTAGTGGAGC
CGGCCTCTGAGCGTGAGGGAGGGGAGCGTGAGGTGGAGGACGTGCCGAAGGTAGTGGAGCCGGCCTCTGAGCGTGAGGGA
GGGGAGCGTGAGGTGGAGGACGCGCCGAAGGTAGTGGAGCCGGCCTCTGAGCGTGAGGGAGGGGAGCGTGAGGTGGAGGA
CGTGCCGAAGGTAGTGGAGCCGGCCTCTGAGCGTGAGGGAGGGGAGCGTGAGGTGGAGGACGTGCCGAAGGTAGTGGAGC
CGGCCTCTGAGCGTGRGGGAGGGGAGCGTGAGGTGGAGGACGCGCCGAAGGTAGTGGAGCCGGCCTCTGAGCGTGAGGGA
GGGGAGCGTGAGGTGGAGGACGCGCCGAAGGTAGTGGAGCCGGCCTCTGAGCGTGAGGGAGGGGAGCGTGAGGTGGAGGA
CGTGCCGGGGGTAGTGGAGCCGGCCTCTGGGCATGAAGGAGGGGAGCGTGAGGTGGAGGACGTGCCGAAGGTAGTGGAGC
CGGCCTCTGAGCGTGAGGGAGGGGAGCGTGAGGTGGAGGACGTGCCGAAGGTAGTGGAGCCGGCCTCTGAGCGTGAGGGA
GGGGAGCGTGAGGTGGAGGACGTGCCGAAGGTAGTGGAGCCGGCCTCTGAGCGTGAGGGAGGGGAGCGTGAGGTGGAGGA
CGTGCCGAAGGTAGTGGAGCCGGCCTCTGGGCATGAAGGAGGGGAGCGTGAGGTGGAGGACGTGCCGGGGGTAGTGGAGC
CGGCCTCTGGGCATGAAGGAGGGGAGCGTGAGGTCGCTTCTCAGCATACGAAGCAGCCATCCCACTCGGTTTCCAACTCA
GCTCCCAATCAGTTTCGGAACCCTGAGGGGGAACTCCCCTTTACGCTCCCTGACCTATCCGAGTCAGAAATTGTGGTTCC
GGAGGAACAGAAAGGACGTGCGCATCCCCAGGTGATACCCGAGGGTGCGCCACGTGGACTGCAACCTGGTGAATACTACG
TACAGATTGCAGTCTTTCATGACGCTATCCAGGTGCAGAGCATTGTCCACCGTTACGGGGTAGAATACCCCATCGCAGTG
GAGCAGGACATCCATGAAGGTAAGGTGCGTTTCACCGTATGCGTCGGTCCCGTCCAAAAAGACGAACGCGGCGCGGTACT
AGAGAACTTCCAAAGGTTTGGATTCAAGGACGCCTTTCTGAAAAAGGCGCGATGA

Upstream 100 bases:

>100_bases
CATACGGGTGGGCACGAGCACCGATACAGCCGGAGTTCAGTTATAGAAAATAGGGAATACGTAAGGTGTCTGCAGCGTCG
CTTCAGCTGGGAGGAGTCTT

Downstream 100 bases:

>100_bases
TCAGGTCGGCCCTCCTCTTCCCCTCGTGACCGTGGTGACTCGCCCCGAAGGGGGCGCACAGAGCCCGAAGGAACGGAAGG
GAAGGGGCAGACTTAACTAT

Product: acidic repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MIKRHMFAKRGVKGRSYLVRVNTAFLVLCVASVTPLWAVWEGNAEIGPQGSFLQDGMFVRSDMFPKNTAVEISNLEKNAK
AQAVVIGHAGIPGLLVSLAPAAAAQLGIGVYQAVRVRVRTLGTVRGGSQTSQDGLSLASLPSRVPARPAQRDPLSSPPAG
HTVPEYRDTVIFDDPRLVSPLSREVEDAPKVVEPASEREGGEREVEDAPKVVEPASEREGGEREVEDVPKVVEPASEREG
GEREVEDAPKVVEPASEREGGEREVEDVPKVVEPASEREGGEREVEDVPKVVEPASERXGGEREVEDAPKVVEPASEREG
GEREVEDAPKVVEPASEREGGEREVEDVPGVVEPASGHEGGEREVEDVPKVVEPASEREGGEREVEDVPKVVEPASEREG
GEREVEDVPKVVEPASEREGGEREVEDVPKVVEPASGHEGGEREVEDVPGVVEPASGHEGGEREVASQHTKQPSHSVSNS
APNQFRNPEGELPFTLPDLSESEIVVPEEQKGRAHPQVIPEGAPRGLQPGEYYVQIAVFHDAIQVQSIVHRYGVEYPIAV
EQDIHEGKVRFTVCVGPVQKDERGAVLENFQRFGFKDAFLKKAR

Sequences:

>Translated_604_residues
MIKRHMFAKRGVKGRSYLVRVNTAFLVLCVASVTPLWAVWEGNAEIGPQGSFLQDGMFVRSDMFPKNTAVEISNLEKNAK
AQAVVIGHAGIPGLLVSLAPAAAAQLGIGVYQAVRVRVRTLGTVRGGSQTSQDGLSLASLPSRVPARPAQRDPLSSPPAG
HTVPEYRDTVIFDDPRLVSPLSREVEDAPKVVEPASEREGGEREVEDAPKVVEPASEREGGEREVEDVPKVVEPASEREG
GEREVEDAPKVVEPASEREGGEREVEDVPKVVEPASEREGGEREVEDVPKVVEPASERXGGEREVEDAPKVVEPASEREG
GEREVEDAPKVVEPASEREGGEREVEDVPGVVEPASGHEGGEREVEDVPKVVEPASEREGGEREVEDVPKVVEPASEREG
GEREVEDVPKVVEPASEREGGEREVEDVPKVVEPASGHEGGEREVEDVPGVVEPASGHEGGEREVASQHTKQPSHSVSNS
APNQFRNPEGELPFTLPDLSESEIVVPEEQKGRAHPQVIPEGAPRGLQPGEYYVQIAVFHDAIQVQSIVHRYGVEYPIAV
EQDIHEGKVRFTVCVGPVQKDERGAVLENFQRFGFKDAFLKKAR
>Mature_604_residues
MIKRHMFAKRGVKGRSYLVRVNTAFLVLCVASVTPLWAVWEGNAEIGPQGSFLQDGMFVRSDMFPKNTAVEISNLEKNAK
AQAVVIGHAGIPGLLVSLAPAAAAQLGIGVYQAVRVRVRTLGTVRGGSQTSQDGLSLASLPSRVPARPAQRDPLSSPPAG
HTVPEYRDTVIFDDPRLVSPLSREVEDAPKVVEPASEREGGEREVEDAPKVVEPASEREGGEREVEDVPKVVEPASEREG
GEREVEDAPKVVEPASEREGGEREVEDVPKVVEPASEREGGEREVEDVPKVVEPASERXGGEREVEDAPKVVEPASEREG
GEREVEDAPKVVEPASEREGGEREVEDVPGVVEPASGHEGGEREVEDVPKVVEPASEREGGEREVEDVPKVVEPASEREG
GEREVEDVPKVVEPASEREGGEREVEDVPKVVEPASGHEGGEREVEDVPGVVEPASGHEGGEREVASQHTKQPSHSVSNS
APNQFRNPEGELPFTLPDLSESEIVVPEEQKGRAHPQVIPEGAPRGLQPGEYYVQIAVFHDAIQVQSIVHRYGVEYPIAV
EQDIHEGKVRFTVCVGPVQKDERGAVLENFQRFGFKDAFLKKAR

Specific function: One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 7

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IF-2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006847
- InterPro:   IPR000795
- InterPro:   IPR005225
- InterPro:   IPR000178
- InterPro:   IPR015760
- InterPro:   IPR023115
- InterPro:   IPR004161
- InterPro:   IPR009000 [H]

Pfam domain/function: PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2; PF11987 IF-2; PF04760 IF2_N [H]

EC number: NA

Molecular weight: Translated: 65431; Mature: 65431

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRHMFAKRGVKGRSYLVRVNTAFLVLCVASVTPLWAVWEGNAEIGPQGSFLQDGMFVR
CCCHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHCCCHHH
SDMFPKNTAVEISNLEKNAKAQAVVIGHAGIPGLLVSLAPAAAAQLGIGVYQAVRVRVRT
HCCCCCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGTVRGGSQTSQDGLSLASLPSRVPARPAQRDPLSSPPAGHTVPEYRDTVIFDDPRLVSP
HHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCH
LSREVEDAPKVVEPASEREGGEREVEDAPKVVEPASEREGGEREVEDVPKVVEPASEREG
HHHHHHHCHHHCCCCHHCCCCCCHHHHCCHHHCCCHHCCCCCHHHHHHHHHHCCCHHCCC
GEREVEDAPKVVEPASEREGGEREVEDVPKVVEPASEREGGEREVEDVPKVVEPASERXG
CCCHHHHCCHHHCCCHHCCCCCHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHCCHHHHCC
GEREVEDAPKVVEPASEREGGEREVEDAPKVVEPASEREGGEREVEDVPGVVEPASGHEG
CCCCHHHCCHHHCCCHHCCCCCCHHHHCCHHHCCCHHCCCCCCHHHHCCCCCCCCCCCCC
GEREVEDVPKVVEPASEREGGEREVEDVPKVVEPASEREGGEREVEDVPKVVEPASEREG
CCCCHHHHHHHHCCCHHCCCCCHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHCCCHHCCC
GEREVEDVPKVVEPASGHEGGEREVEDVPGVVEPASGHEGGEREVASQHTKQPSHSVSNS
CCCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCC
APNQFRNPEGELPFTLPDLSESEIVVPEEQKGRAHPQVIPEGAPRGLQPGEYYVQIAVFH
CCHHHCCCCCCCCEECCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEEHHH
DAIQVQSIVHRYGVEYPIAVEQDIHEGKVRFTVCVGPVQKDERGAVLENFQRFGFKDAFL
HHHHHHHHHHHHCCCCCEECCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCHHHHH
KKAR
HCCC
>Mature Secondary Structure
MIKRHMFAKRGVKGRSYLVRVNTAFLVLCVASVTPLWAVWEGNAEIGPQGSFLQDGMFVR
CCCHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHCCCHHH
SDMFPKNTAVEISNLEKNAKAQAVVIGHAGIPGLLVSLAPAAAAQLGIGVYQAVRVRVRT
HCCCCCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGTVRGGSQTSQDGLSLASLPSRVPARPAQRDPLSSPPAGHTVPEYRDTVIFDDPRLVSP
HHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCH
LSREVEDAPKVVEPASEREGGEREVEDAPKVVEPASEREGGEREVEDVPKVVEPASEREG
HHHHHHHCHHHCCCCHHCCCCCCHHHHCCHHHCCCHHCCCCCHHHHHHHHHHCCCHHCCC
GEREVEDAPKVVEPASEREGGEREVEDVPKVVEPASEREGGEREVEDVPKVVEPASERXG
CCCHHHHCCHHHCCCHHCCCCCHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHCCHHHHCC
GEREVEDAPKVVEPASEREGGEREVEDAPKVVEPASEREGGEREVEDVPGVVEPASGHEG
CCCCHHHCCHHHCCCHHCCCCCCHHHHCCHHHCCCHHCCCCCCHHHHCCCCCCCCCCCCC
GEREVEDVPKVVEPASEREGGEREVEDVPKVVEPASEREGGEREVEDVPKVVEPASEREG
CCCCHHHHHHHHCCCHHCCCCCHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHCCCHHCCC
GEREVEDVPKVVEPASGHEGGEREVEDVPGVVEPASGHEGGEREVASQHTKQPSHSVSNS
CCCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCC
APNQFRNPEGELPFTLPDLSESEIVVPEEQKGRAHPQVIPEGAPRGLQPGEYYVQIAVFH
CCHHHCCCCCCCCEECCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEEHHH
DAIQVQSIVHRYGVEYPIAVEQDIHEGKVRFTVCVGPVQKDERGAVLENFQRFGFKDAFL
HHHHHHHHHHHHCCCCCEECCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCHHHHH
KKAR
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA