| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189025567
Identifier: 189025567
GI number: 189025567
Start: 357554
End: 358771
Strand: Direct
Name: 189025567
Synonym: TPASS_0334
Alternate gene names: NA
Gene position: 357554-358771 (Clockwise)
Preceding gene: 189025566
Following gene: 189025569
Centisome position: 31.38
GC content: 55.5
Gene sequence:
>1218_bases ATGCCAGATATTGGAGAGCTGCTAAAGACGACGCGCGAACGCAAACACCTCAGTCTCGAACAGGCTGCGCACGAGACGAG TATCGCACGCCGTTACCTGGAGGCGCTCGAGAACGATGAGTATGATGTTTTTCCCGGCGAACCCTACATCCTTGGCTTTT TGCGCAATTACTGCGAGTACCTCCAGCTGGATACGGAGCAGTGCATCGCTCGCTATAAACATTTAAAAATTCAAGAAATG TCGCTGCCAACGGAGACCCTCCTACCGAGTAAACGGTGGGGTTCATTTCCCCTGTTAAAGGGAGTTGCCTGTGTGCTCTT CCTGGGTGGGGTGCTGGGTGTGTATTACGCGCGGCACCGCGCGCTGGGTTTTCTATCCCGTATTGTGTTCTTTGGCAGAG CACAGCGTACCCCAAGGGAGCTGTCTCCCCCCGATGCAACGGGGGCGGTGCGCGAAACAGTGTCGCTGTCTTCTGCACAA CATGAGGAGCGTGCGCGACGCACGCGTTCGAGCGCATCTCGCTATACGCTTGCTGAGGAAAAGTTTGAACACACGGTCTT TCCAGGAGATGTGTTGGTTATCAGTTCCGGGGGGAATGCGTACGAGCTAACCGTCAGCCGCACTACGCCGCACCTGTATC TGGACACGCCCATTGGTACACAGGTGATCTCTCTTGGTCAGCGCCTAGTGATGGATTTGAATACAGATGTGCAGCCGGAC GTAGAAATAAGTGTGGAAGACATTGAAGCACATCAGGCGGACGGGGGCGCGCGTGTTCGCGTGTTTACAGGTAGTCTGGT GCAGACGCTCCGTGATCGCAGTGCTCAGAGCTTTGTGCCTACAAGTGGGGTAAATGTCTCTGGTCAGACGGGAGTCGCTG CCGGCGCGCGATATCAAGTTTTGTTTGAAGGCGGTGTTGCGTACCCGGTGACAATGAACGCAACGTTTCGCTCGTACTGT TTGTTCCGGTACGAAGCAGATCGCACGCGGCGGGAGGAGCGGTATTACCAAAAGGGCGAGCAGCTGACGGTGCAAGCAAA CAACGGGATTCGGGTGTGGGCATCTAACGGGAATGTGGTGCAGCTGCAAATTGTCGCAGGCGGTAAGACGGTGGATGTAG GCCTCAGCCGTCCGGGGGAAGTGCTGGTCAAAGACATCAAATGGATCAAAGATGAGGACGCCGGGCGGTTCAAGTTCGTG GTCATGGAAGTAGACTAG
Upstream 100 bases:
>100_bases TATTCCAGACACACGGTTCCTCTACGATGTGCCCCCAACCGCAAATGTGGTGCACAATTTTCTCTTTGCTGATTGACCGC TGCCCCCAAAGGACGTGACG
Downstream 100 bases:
>100_bases CGCGCGGCGGCAGCAATCGCGTACGCGTTCCAGAGCGCGTGGACTGCAGTGCACAGTGCGCTTGCGCGCGCGCGGGAGCC GCTTCTTTTTTTCTCTCTTA
Product: hypothetical protein
Products: NA
Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MPDIGELLKTTRERKHLSLEQAAHETSIARRYLEALENDEYDVFPGEPYILGFLRNYCEYLQLDTEQCIARYKHLKIQEM SLPTETLLPSKRWGSFPLLKGVACVLFLGGVLGVYYARHRALGFLSRIVFFGRAQRTPRELSPPDATGAVRETVSLSSAQ HEERARRTRSSASRYTLAEEKFEHTVFPGDVLVISSGGNAYELTVSRTTPHLYLDTPIGTQVISLGQRLVMDLNTDVQPD VEISVEDIEAHQADGGARVRVFTGSLVQTLRDRSAQSFVPTSGVNVSGQTGVAAGARYQVLFEGGVAYPVTMNATFRSYC LFRYEADRTRREERYYQKGEQLTVQANNGIRVWASNGNVVQLQIVAGGKTVDVGLSRPGEVLVKDIKWIKDEDAGRFKFV VMEVD
Sequences:
>Translated_405_residues MPDIGELLKTTRERKHLSLEQAAHETSIARRYLEALENDEYDVFPGEPYILGFLRNYCEYLQLDTEQCIARYKHLKIQEM SLPTETLLPSKRWGSFPLLKGVACVLFLGGVLGVYYARHRALGFLSRIVFFGRAQRTPRELSPPDATGAVRETVSLSSAQ HEERARRTRSSASRYTLAEEKFEHTVFPGDVLVISSGGNAYELTVSRTTPHLYLDTPIGTQVISLGQRLVMDLNTDVQPD VEISVEDIEAHQADGGARVRVFTGSLVQTLRDRSAQSFVPTSGVNVSGQTGVAAGARYQVLFEGGVAYPVTMNATFRSYC LFRYEADRTRREERYYQKGEQLTVQANNGIRVWASNGNVVQLQIVAGGKTVDVGLSRPGEVLVKDIKWIKDEDAGRFKFV VMEVD >Mature_404_residues PDIGELLKTTRERKHLSLEQAAHETSIARRYLEALENDEYDVFPGEPYILGFLRNYCEYLQLDTEQCIARYKHLKIQEMS LPTETLLPSKRWGSFPLLKGVACVLFLGGVLGVYYARHRALGFLSRIVFFGRAQRTPRELSPPDATGAVRETVSLSSAQH EERARRTRSSASRYTLAEEKFEHTVFPGDVLVISSGGNAYELTVSRTTPHLYLDTPIGTQVISLGQRLVMDLNTDVQPDV EISVEDIEAHQADGGARVRVFTGSLVQTLRDRSAQSFVPTSGVNVSGQTGVAAGARYQVLFEGGVAYPVTMNATFRSYCL FRYEADRTRREERYYQKGEQLTVQANNGIRVWASNGNVVQLQIVAGGKTVDVGLSRPGEVLVKDIKWIKDEDAGRFKFVV MEVD
Specific function: Unknown
COG id: COG1426
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45309; Mature: 45178
Theoretical pI: Translated: 6.95; Mature: 6.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDIGELLKTTRERKHLSLEQAAHETSIARRYLEALENDEYDVFPGEPYILGFLRNYCEY CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHH LQLDTEQCIARYKHLKIQEMSLPTETLLPSKRWGSFPLLKGVACVLFLGGVLGVYYARHR HCCCHHHHHHHHHCCEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ALGFLSRIVFFGRAQRTPRELSPPDATGAVRETVSLSSAQHEERARRTRSSASRYTLAEE HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHH KFEHTVFPGDVLVISSGGNAYELTVSRTTPHLYLDTPIGTQVISLGQRLVMDLNTDVQPD HHCCEECCCCEEEEECCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHEEECCCCCCCC VEISVEDIEAHQADGGARVRVFTGSLVQTLRDRSAQSFVPTSGVNVSGQTGVAAGARYQV CEEEEEHHHHCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE LFEGGVAYPVTMNATFRSYCLFRYEADRTRREERYYQKGEQLTVQANNGIRVWASNGNVV EEECCEEEEEEECCCHHHEEEEEECCHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCEE QLQIVAGGKTVDVGLSRPGEVLVKDIKWIKDEDAGRFKFVVMEVD EEEEEECCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEC >Mature Secondary Structure PDIGELLKTTRERKHLSLEQAAHETSIARRYLEALENDEYDVFPGEPYILGFLRNYCEY CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHH LQLDTEQCIARYKHLKIQEMSLPTETLLPSKRWGSFPLLKGVACVLFLGGVLGVYYARHR HCCCHHHHHHHHHCCEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ALGFLSRIVFFGRAQRTPRELSPPDATGAVRETVSLSSAQHEERARRTRSSASRYTLAEE HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHH KFEHTVFPGDVLVISSGGNAYELTVSRTTPHLYLDTPIGTQVISLGQRLVMDLNTDVQPD HHCCEECCCCEEEEECCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHEEECCCCCCCC VEISVEDIEAHQADGGARVRVFTGSLVQTLRDRSAQSFVPTSGVNVSGQTGVAAGARYQV CEEEEEHHHHCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE LFEGGVAYPVTMNATFRSYCLFRYEADRTRREERYYQKGEQLTVQANNGIRVWASNGNVV EEECCEEEEEEECCCHHHEEEEEECCHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCEE QLQIVAGGKTVDVGLSRPGEVLVKDIKWIKDEDAGRFKFVVMEVD EEEEEECCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA