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The map label for this gene is rbsC1 [H]

Identifier: 189025555

GI number: 189025555

Start: 338816

End: 340018

Strand: Direct

Name: rbsC1 [H]

Synonym: TPASS_0322

Alternate gene names: 189025555

Gene position: 338816-340018 (Clockwise)

Preceding gene: 189025554

Following gene: 189025556

Centisome position: 29.73

GC content: 55.36

Gene sequence:

>1203_bases
GTGCGACGCAACAGAGCAAGAGCTCGGGCGTCTCATGAGTGGGATGCGGAAAAAAGAGACTGCGGGCAAAAAAACCGGGG
TACAGGGGTGATTGCGCGTCTCCGGGGGTGCCTGGTTCACCCCAAATACCACGCGCTGCTTATTCCCTGCTTGGCGGTGA
TCTTGGGGTTTGCCGTAGGTGCGGTGGTAATGGCGGTGTCAGGTTTGCACCCTAAATACATTCTCATAGCTTTGGTACGT
TCGATGTTTGGCGTGAATGTACAGGCTTTTGGCACCGGCAGGTCCGTGTGGAACTTCAGGTATATGGGCGAAGGAGTGGT
GACGTGTCTGCCGCTGATACTCACAGGACTTGCGGTGGCATTTACGTCCCATATGGGATTGTTCAATATCGGGGCAGAAG
GGCAGCTCGTAGTCGGTAGCGTGTGCGCAGTGTGTGTCGGTGTCCTTTGGCATGAGCACCTTTCTTTCTTTACCATTCCT
GCGGCGGTTCTTGCAGGAATGGTAGGGGGAGGACTGTGGGGTTTGATACCAGGGGTGTTGCGCGCAGTGTGCGGGATCAG
TGAGGTGGTGGTTACCATTATGCTCAACTACGTAGGACTGTATGGGGCGAATTTTGTAGTCACCGCTTTGCCTGGGAGCG
ACTTGATGCGTACGGTGTCTTTACCCCCAGCTGCGACGTTGCACAGTGATTTTCTCTCGCGTGTAAGCAATGGGTCGCGT
CTGCATTGGGGCTTTTTGCTTGTGATAGCTGCACTGGTTAGCTTTAAGTTTCTCATTGAGAAAACAACGTTCGGCTATGA
GCTCCGTGTCGTTGGTGCTAGTGCCGAAGCGGCCCGCTATGCGGGGATTCACATCAGGCGGCGTGTGATGCTTGCAACGA
GCATTTCGGGTATGTATGCAGGGCTCGCCGGTGTGTTGCTAGCGATCGGTACTTTTTCGTACGGGCGGGTGTTACCCGGA
TTTGAAGGGTATGGATTTGAGGGGATTGTGGTGTCCTTGGTGGGCCGTAATACGGCGTGGGGGTGTGTGTTCGGCGGTTC
GCTGCTCGGTTCGTTGCGCGCGGCAGGCCCACTCATGCAGTTGAACGGAGTGCCGAAGGAGGTGTCGGTAATTATCGTTT
CGGCGATTATTGTCTTTCTTTCCATGCACAATGGAATCCGGGCGATGCTCGTCAGGTGGGGGAGGCAGGGTGCGCACGTA
TGA

Upstream 100 bases:

>100_bases
GTGCAGTGCTCCTCTTTTCCCTTGATATGGATGAAGTGCTTGCACTGGCAGATTCTATTGCAGTTATGTACGAGGGAGAG
ATAGTGGGGACCGTGCACGC

Downstream 100 bases:

>100_bases
ACACGTTTTATTCGATGGTGGCGCTGACGCTTGTGTTTTCAACCCCTATTTTGATTACTGCGTTGGGGGGGTTGTTTTCC
GAGCGGAGCGGGGTGATAAA

Product: ribose/galactose ABC transporter, permease protein

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MRRNRARARASHEWDAEKRDCGQKNRGTGVIARLRGCLVHPKYHALLIPCLAVILGFAVGAVVMAVSGLHPKYILIALVR
SMFGVNVQAFGTGRSVWNFRYMGEGVVTCLPLILTGLAVAFTSHMGLFNIGAEGQLVVGSVCAVCVGVLWHEHLSFFTIP
AAVLAGMVGGGLWGLIPGVLRAVCGISEVVVTIMLNYVGLYGANFVVTALPGSDLMRTVSLPPAATLHSDFLSRVSNGSR
LHWGFLLVIAALVSFKFLIEKTTFGYELRVVGASAEAARYAGIHIRRRVMLATSISGMYAGLAGVLLAIGTFSYGRVLPG
FEGYGFEGIVVSLVGRNTAWGCVFGGSLLGSLRAAGPLMQLNGVPKEVSVIIVSAIIVFLSMHNGIRAMLVRWGRQGAHV

Sequences:

>Translated_400_residues
MRRNRARARASHEWDAEKRDCGQKNRGTGVIARLRGCLVHPKYHALLIPCLAVILGFAVGAVVMAVSGLHPKYILIALVR
SMFGVNVQAFGTGRSVWNFRYMGEGVVTCLPLILTGLAVAFTSHMGLFNIGAEGQLVVGSVCAVCVGVLWHEHLSFFTIP
AAVLAGMVGGGLWGLIPGVLRAVCGISEVVVTIMLNYVGLYGANFVVTALPGSDLMRTVSLPPAATLHSDFLSRVSNGSR
LHWGFLLVIAALVSFKFLIEKTTFGYELRVVGASAEAARYAGIHIRRRVMLATSISGMYAGLAGVLLAIGTFSYGRVLPG
FEGYGFEGIVVSLVGRNTAWGCVFGGSLLGSLRAAGPLMQLNGVPKEVSVIIVSAIIVFLSMHNGIRAMLVRWGRQGAHV
>Mature_400_residues
MRRNRARARASHEWDAEKRDCGQKNRGTGVIARLRGCLVHPKYHALLIPCLAVILGFAVGAVVMAVSGLHPKYILIALVR
SMFGVNVQAFGTGRSVWNFRYMGEGVVTCLPLILTGLAVAFTSHMGLFNIGAEGQLVVGSVCAVCVGVLWHEHLSFFTIP
AAVLAGMVGGGLWGLIPGVLRAVCGISEVVVTIMLNYVGLYGANFVVTALPGSDLMRTVSLPPAATLHSDFLSRVSNGSR
LHWGFLLVIAALVSFKFLIEKTTFGYELRVVGASAEAARYAGIHIRRRVMLATSISGMYAGLAGVLLAIGTFSYGRVLPG
FEGYGFEGIVVSLVGRNTAWGCVFGGSLLGSLRAAGPLMQLNGVPKEVSVIIVSAIIVFLSMHNGIRAMLVRWGRQGAHV

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4603

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851
- InterPro:   IPR002229 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 42564; Mature: 42564

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRNRARARASHEWDAEKRDCGQKNRGTGVIARLRGCLVHPKYHALLIPCLAVILGFAVG
CCCCHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AVVMAVSGLHPKYILIALVRSMFGVNVQAFGTGRSVWNFRYMGEGVVTCLPLILTGLAVA
HHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHH
FTSHMGLFNIGAEGQLVVGSVCAVCVGVLWHEHLSFFTIPAAVLAGMVGGGLWGLIPGVL
HHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
RAVCGISEVVVTIMLNYVGLYGANFVVTALPGSDLMRTVSLPPAATLHSDFLSRVSNGSR
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHCCCCE
LHWGFLLVIAALVSFKFLIEKTTFGYELRVVGASAEAARYAGIHIRRRVMLATSISGMYA
EHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
GLAGVLLAIGTFSYGRVLPGFEGYGFEGIVVSLVGRNTAWGCVFGGSLLGSLRAAGPLMQ
HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHHCCCCHH
LNGVPKEVSVIIVSAIIVFLSMHNGIRAMLVRWGRQGAHV
HCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRRNRARARASHEWDAEKRDCGQKNRGTGVIARLRGCLVHPKYHALLIPCLAVILGFAVG
CCCCHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AVVMAVSGLHPKYILIALVRSMFGVNVQAFGTGRSVWNFRYMGEGVVTCLPLILTGLAVA
HHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHH
FTSHMGLFNIGAEGQLVVGSVCAVCVGVLWHEHLSFFTIPAAVLAGMVGGGLWGLIPGVL
HHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
RAVCGISEVVVTIMLNYVGLYGANFVVTALPGSDLMRTVSLPPAATLHSDFLSRVSNGSR
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHCCCCE
LHWGFLLVIAALVSFKFLIEKTTFGYELRVVGASAEAARYAGIHIRRRVMLATSISGMYA
EHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
GLAGVLLAIGTFSYGRVLPGFEGYGFEGIVVSLVGRNTAWGCVFGGSLLGSLRAAGPLMQ
HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHHCCCCHH
LNGVPKEVSVIIVSAIIVFLSMHNGIRAMLVRWGRQGAHV
HCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]