Definition Treponema pallidum subsp. pallidum SS14, complete genome.
Accession NC_010741
Length 1,139,457

Click here to switch to the map view.

The map label for this gene is 189025536

Identifier: 189025536

GI number: 189025536

Start: 316222

End: 317163

Strand: Direct

Name: 189025536

Synonym: TPASS_0302

Alternate gene names: NA

Gene position: 316222-317163 (Clockwise)

Preceding gene: 189025535

Following gene: 189025539

Centisome position: 27.75

GC content: 55.41

Gene sequence:

>942_bases
ATGGGAGTGATAGGCACCACAGTGATAGCAATATTACATCGCGCAGCACCGCTTGCATGCGCTGCAGCAGGAGCGCTCGC
AACAGAATACGCGGGAGTGTTGGGAATTTTTATGGAAGGGGTGATTACCTTCTCGTCCTTTTGCATAGCGTTTTTCGCAC
TGGTATGGGGAAGTTATTGGGGTGGACTGGGTATTACCGTGTGTGTGGTGCCGCTGTGTTTATTTTTTGTGGCCGTGGGT
ACGGAGCGTATGCGGGCAAATCCGTTTTTAACGGGCATAGCAGTGCACTTTTCTGCAATGGGGATGAGCGCATTTGGTGC
GTCCAGCATGTTTGCACGCGCTGCAGCTTCTGCGATGCAGATGGACACGGCAGCGCATGGTGTCTCTTTCACTCATGTTT
CTCTTGCACATACCCGCGTTTTACCTCACCCCCTGTGGGGGACTGCGGTGGCCTTTGCACTGGTGTGGGTTTTTCACCTG
TATCTGTACTCTACAAACGTGGGTATCAATTTTATGCACTCTGGGGAAGGTGCGTTAGCCTTGCAGGTGCGGGGAACTGA
CGCGGCGCGGTATCGGATGGTGTCGTGGGCGGTAGCAGGCGTGTGTGCGGTGTGTGCGGGGGGACTGTTAGTATTGCGTG
TCGGTACGTACACCCCGCAGATGGCTGCAGGCAGAGGATGGACGGCACTTGCAATTGTTTTTCTTGCACGCAAGCGGATG
ATGTGGTGTGTGCCGGCGGCGATTTTTTTCTCCGGTATTGAACACATGTGTGACGTATTGCAGGGCACTCACGTGGTGCC
CACCGGTGTACTGTTTGCGCTGCCGTACATCCTCTCACTGGTGGTGTTTGTGTGCACACGGCGCACCTCCCCGTGCCGAC
GCGGAGAGCGCAGACGTAGCAGGCTTCTTTTTGCGTATCTGCAGCGCGTTACGTGCGCTTGA

Upstream 100 bases:

>100_bases
ATCGATTCCTTGTCACCGTTTTTTGTTTTCGTGGGGAAAAGCACAGAACTCGCAGACGTCATGCGCTTTCTGTACATGAT
ACACATCATAGGCGGTCTCG

Downstream 100 bases:

>100_bases
TCCGTTTGAACAATTCGTCTCGGCCAATGACAATCCAAATGGGCCGTCCGTGGGGACACCTCGATTGTGGTAATGCAAAA
GCCTGCTCCACTAACGAGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MGVIGTTVIAILHRAAPLACAAAGALATEYAGVLGIFMEGVITFSSFCIAFFALVWGSYWGGLGITVCVVPLCLFFVAVG
TERMRANPFLTGIAVHFSAMGMSAFGASSMFARAAASAMQMDTAAHGVSFTHVSLAHTRVLPHPLWGTAVAFALVWVFHL
YLYSTNVGINFMHSGEGALALQVRGTDAARYRMVSWAVAGVCAVCAGGLLVLRVGTYTPQMAAGRGWTALAIVFLARKRM
MWCVPAAIFFSGIEHMCDVLQGTHVVPTGVLFALPYILSLVVFVCTRRTSPCRRGERRRSRLLFAYLQRVTCA

Sequences:

>Translated_313_residues
MGVIGTTVIAILHRAAPLACAAAGALATEYAGVLGIFMEGVITFSSFCIAFFALVWGSYWGGLGITVCVVPLCLFFVAVG
TERMRANPFLTGIAVHFSAMGMSAFGASSMFARAAASAMQMDTAAHGVSFTHVSLAHTRVLPHPLWGTAVAFALVWVFHL
YLYSTNVGINFMHSGEGALALQVRGTDAARYRMVSWAVAGVCAVCAGGLLVLRVGTYTPQMAAGRGWTALAIVFLARKRM
MWCVPAAIFFSGIEHMCDVLQGTHVVPTGVLFALPYILSLVVFVCTRRTSPCRRGERRRSRLLFAYLQRVTCA
>Mature_312_residues
GVIGTTVIAILHRAAPLACAAAGALATEYAGVLGIFMEGVITFSSFCIAFFALVWGSYWGGLGITVCVVPLCLFFVAVGT
ERMRANPFLTGIAVHFSAMGMSAFGASSMFARAAASAMQMDTAAHGVSFTHVSLAHTRVLPHPLWGTAVAFALVWVFHLY
LYSTNVGINFMHSGEGALALQVRGTDAARYRMVSWAVAGVCAVCAGGLLVLRVGTYTPQMAAGRGWTALAIVFLARKRMM
WCVPAAIFFSGIEHMCDVLQGTHVVPTGVLFALPYILSLVVFVCTRRTSPCRRGERRRSRLLFAYLQRVTCA

Specific function: Unknown

COG id: COG1079

COG function: function code R; Uncharacterized ABC-type transport system, permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33534; Mature: 33403

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVIGTTVIAILHRAAPLACAAAGALATEYAGVLGIFMEGVITFSSFCIAFFALVWGSYW
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGLGITVCVVPLCLFFVAVGTERMRANPFLTGIAVHFSAMGMSAFGASSMFARAAASAMQ
CHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
MDTAAHGVSFTHVSLAHTRVLPHPLWGTAVAFALVWVFHLYLYSTNVGINFMHSGEGALA
HHHHHCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEE
LQVRGTDAARYRMVSWAVAGVCAVCAGGLLVLRVGTYTPQMAAGRGWTALAIVFLARKRM
EEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCCCHHHHHHHHHHHHHH
MWCVPAAIFFSGIEHMCDVLQGTHVVPTGVLFALPYILSLVVFVCTRRTSPCRRGERRRS
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
RLLFAYLQRVTCA
HHHHHHHHHHHCC
>Mature Secondary Structure 
GVIGTTVIAILHRAAPLACAAAGALATEYAGVLGIFMEGVITFSSFCIAFFALVWGSYW
CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGLGITVCVVPLCLFFVAVGTERMRANPFLTGIAVHFSAMGMSAFGASSMFARAAASAMQ
CHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
MDTAAHGVSFTHVSLAHTRVLPHPLWGTAVAFALVWVFHLYLYSTNVGINFMHSGEGALA
HHHHHCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEE
LQVRGTDAARYRMVSWAVAGVCAVCAGGLLVLRVGTYTPQMAAGRGWTALAIVFLARKRM
EEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCCCHHHHHHHHHHHHHH
MWCVPAAIFFSGIEHMCDVLQGTHVVPTGVLFALPYILSLVVFVCTRRTSPCRRGERRRS
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
RLLFAYLQRVTCA
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA