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The map label for this gene is 189025415

Identifier: 189025415

GI number: 189025415

Start: 200074

End: 200853

Strand: Direct

Name: 189025415

Synonym: TPASS_0182

Alternate gene names: NA

Gene position: 200074-200853 (Clockwise)

Preceding gene: 189025414

Following gene: 189025418

Centisome position: 17.56

GC content: 60.26

Gene sequence:

>780_bases
TTGCGCACATGCATACCCTTGATTCTGGGGATGCACGTCCGCTTGTTGCACCTGCATGTTTTAGCGACACGCGTTGCAAG
GTGTACGCGCTGTGCGTCGGCTTCTTTGTCGTCCTGTTACAGCTGCTGTGGGGTAGCGCGCGTGCGTATTTTAAAACATG
AGGCGCAGTCTGCGCACGCTGCTGCGCGTGCGCTCAAGGCCGGTGCGCTCGTAGCGTTGCCGACAGATACGGTGTACGGT
TTCTCTGGCCTTGTGCCACACGCTGTTCCGGATCTCATATGTCTGAAGGCGCGTGGGTGCACAGAGACGGAAGGGAACCG
GAGAGAGGGCTATCCGTTCATTGCACTGCTTGCAGATCCACAGGACGTGGTTGTCTATACCGGGACGCGGCTTCCTGCGG
AGTTTCGTGCGCTGTGGCCTGGCCCGTATACGTTTGTGCTGCGCATGCAAGACGGCGCGACGCAGGCGTTCCGCTGTCCT
GCTGACCTGTGGCTGCGCTCAGTGATACGGGCAGTTGGGGGAGCGATCTTTTCCACGAGTGCAAATCGGCACGGCGAGCC
GCCGCTGCAAGATGCACAGGACATCGACCACATCTTTGGAAAGCATCTTGCGCTGACCGTAGACGCAGGACCACTGACCG
GCTCCCCAAGCGCGGTGATAGACCTCACGCACCCCGTGCCGCGTGTGCTCCGCGCTGGTGCGGCGCCGTTGCCTCTTGCA
GGACTGGAAAGGCGTGACTCTCCTTCCCTCCCTCATGTGGGGGAAGTATGTAAAGAATGA

Upstream 100 bases:

>100_bases
GACGCTCTATCCTTTGACGAAGAGACTATCGGTGCGTATGCGCGTCAGCTAGGATATGTCCGCGCGGGGGATGTGTTAGT
GAGGCCGGTAAACTTTACCG

Downstream 100 bases:

>100_bases
GGTCAGTTGCGGACCCACTCCTCAGGCACCTCTTCATACTCAACAGAAGCGGTGTGCCCTGCGCCCCGCACGACAGGGGC
GGTTCTGACGCCTGAAAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MRTCIPLILGMHVRLLHLHVLATRVARCTRCASASLSSCYSCCGVARVRILKHEAQSAHAAARALKAGALVALPTDTVYG
FSGLVPHAVPDLICLKARGCTETEGNRREGYPFIALLADPQDVVVYTGTRLPAEFRALWPGPYTFVLRMQDGATQAFRCP
ADLWLRSVIRAVGGAIFSTSANRHGEPPLQDAQDIDHIFGKHLALTVDAGPLTGSPSAVIDLTHPVPRVLRAGAAPLPLA
GLERRDSPSLPHVGEVCKE

Sequences:

>Translated_259_residues
MRTCIPLILGMHVRLLHLHVLATRVARCTRCASASLSSCYSCCGVARVRILKHEAQSAHAAARALKAGALVALPTDTVYG
FSGLVPHAVPDLICLKARGCTETEGNRREGYPFIALLADPQDVVVYTGTRLPAEFRALWPGPYTFVLRMQDGATQAFRCP
ADLWLRSVIRAVGGAIFSTSANRHGEPPLQDAQDIDHIFGKHLALTVDAGPLTGSPSAVIDLTHPVPRVLRAGAAPLPLA
GLERRDSPSLPHVGEVCKE
>Mature_259_residues
MRTCIPLILGMHVRLLHLHVLATRVARCTRCASASLSSCYSCCGVARVRILKHEAQSAHAAARALKAGALVALPTDTVYG
FSGLVPHAVPDLICLKARGCTETEGNRREGYPFIALLADPQDVVVYTGTRLPAEFRALWPGPYTFVLRMQDGATQAFRCP
ADLWLRSVIRAVGGAIFSTSANRHGEPPLQDAQDIDHIFGKHLALTVDAGPLTGSPSAVIDLTHPVPRVLRAGAAPLPLA
GLERRDSPSLPHVGEVCKE

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 27744; Mature: 27744

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTCIPLILGMHVRLLHLHVLATRVARCTRCASASLSSCYSCCGVARVRILKHEAQSAHA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AARALKAGALVALPTDTVYGFSGLVPHAVPDLICLKARGCTETEGNRREGYPFIALLADP
HHHHHHCCCEEEECCCHHCCCCCCCHHHHHHHEEEECCCCCCCCCCCCCCCCEEEEEECC
QDVVVYTGTRLPAEFRALWPGPYTFVLRMQDGATQAFRCPADLWLRSVIRAVGGAIFSTS
CEEEEEECCCCCHHHHEECCCCEEEEEEECCCCCCHHCCCHHHHHHHHHHHHCCHHEECC
ANRHGEPPLQDAQDIDHIFGKHLALTVDAGPLTGSPSAVIDLTHPVPRVLRAGAAPLPLA
CCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCEEEECCCHHHHHHHCCCCCCCCC
GLERRDSPSLPHVGEVCKE
CCCCCCCCCCCCHHHHHCC
>Mature Secondary Structure
MRTCIPLILGMHVRLLHLHVLATRVARCTRCASASLSSCYSCCGVARVRILKHEAQSAHA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AARALKAGALVALPTDTVYGFSGLVPHAVPDLICLKARGCTETEGNRREGYPFIALLADP
HHHHHHCCCEEEECCCHHCCCCCCCHHHHHHHEEEECCCCCCCCCCCCCCCCEEEEEECC
QDVVVYTGTRLPAEFRALWPGPYTFVLRMQDGATQAFRCPADLWLRSVIRAVGGAIFSTS
CEEEEEECCCCCHHHHEECCCCEEEEEEECCCCCCHHCCCHHHHHHHHHHHHCCHHEECC
ANRHGEPPLQDAQDIDHIFGKHLALTVDAGPLTGSPSAVIDLTHPVPRVLRAGAAPLPLA
CCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCEEEECCCHHHHHHHCCCCCCCCC
GLERRDSPSLPHVGEVCKE
CCCCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]