| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189025344
Identifier: 189025344
GI number: 189025344
Start: 125178
End: 126911
Strand: Direct
Name: 189025344
Synonym: TPASS_0110
Alternate gene names: NA
Gene position: 125178-126911 (Clockwise)
Preceding gene: 189025339
Following gene: 189025345
Centisome position: 10.99
GC content: 49.62
Gene sequence:
>1734_bases GTGCGTGGCTATGGTGACGCTATGAACGAACAGCTCTCAACATTTGATAAATTGGTGGAAACGCTCTCCACTGAGGACGC GCAGCGTATGCTTGCCGGTATCGGGAAAGCACTGCGTACTAGTGAAGCTAACGCGGAGACTCCCGCGAAAGTCAAGAAAA AGCGCGCCTTTGCTCGCTGGGATACCAGAGAGGATAGCTTGGCGGGCGAAACCTTTTTTTTCCGCTTCTGGATTGGGGTA AAGTCCTTTTTTCGGTCTTCGTCGGTGGAAGCGTTGTACGAGGAAACACTTCTCCAGCGTCTGGGCAATGATCTTAAGGC GCATTACGCGCAGTACATTGACGTAAAGGAAAAAACCTTCACAAAGGTTTTTTACGACAAGATGGGCGAGTTGCGCAAAA CACAGGTATTTTTTGATTCATTGCTCGCCTGCTACAATAGCGATAAGGGGGACTTCTACCTCCTGTTGAGCTCTTTTATC ACTCCCGTTGTGTATGAGCAGCTGATGGCGTGCAGCGATCCGTTTGCTGCGCAGGGAGATGGTACTCCTTCTGGTTTGCG TGCGTCCCTCCTTAAAAGAATGGACGTCGCCCTTGCCACCCTGAGTGGTCCTCATAAAACTGAGTTGTATCAGGCGGCGC GCGCTATCGAGTGGATGAAGGTTTTTTGTGAAGTGCCTGTCGATCGTATTCTGCTGCGTTTTACCGTCATCTCCCCGGCG AGTGCCGTGTGTCCCATTACTATTTTGCAATCTGAATTGGAAAAGCTTGCGTGTGTTATCCATGACAGCAAGCATATTCC CGACGCGGTATTGCAGGGGCTTTTTGTGCTGAAGAGTAAAACATCGCTGCATGACGCGCAGGTGGATAACGCTGCGCACG CTGCTGCCTTTCTTAAGGAGGCGAGTGCAGCGCTCGTTGTTATCAAGGATTTATCGCACAGCATTCCTATTGAGGATTTT GTCCGTTTTGCAGGTAGGAACATTCGTTGGCAACCTCGGGCAATTGCCGGTGGTGAGGATTGGTTTGTCCTTTTTAAGAA AGCGTGGAAAAAACGTTTCAATGAAAAATGGGCGCTGTGGTCTACCGCACAGAAGCGTTTAGTGCTTAAGGAGCAAATGC TTTCTCTTCTCGGAAGGGAGCAGTTCTCAGAGTTGACTCATCGGCCATGGGAAGGGTTTTGGTATCAGCTTGTGTTTAGG CGAGAGATGTCTTTTGTCTTTTTAAAAAATTTGTTCGAAGGTGCGTATGCGCGCGTCGTTTCACCGCCGCTGAACGTTAT TCTTGCTGAGGGCAGTTTCTATCGTCGAGATGAGTTGATAGAGTACACTGACGCGGTAAATGTACTGGAGCAGATGGGAG CAAAGATTAGGAATTTCGARGTAAGACTTTCGCCGGTGGGGGAATGGGGAGTCGCCTTTAGTGCCCAGCGTAAAGAGCAC ACAGTTACCATGAAAAGTAAGGGTATTCTGGAAGCTCTGATAAAGGTAATTGACTCTGAGGCGACTGTCTTGCTTGATGC AACCTTAAAGGCATTTCATTGCATTGGCGCTATGTTGGCGAGTATGATCGGGGCGTCGAAAACAAGTGCCTACGCAACGC TTACCAATTGGTCTGATATCCGTGGGAGCGACAATGCTAGCTTCCGTGAGCAGGCTTCTCAGGCGAGAGCGTATGTGCAA ACGGCGTCGCGTGCGCTAGTAGAAATGGAGAACCTAGAAACTACGCACCTGTGA
Upstream 100 bases:
>100_bases CGCGTGTGGTCCCTTCGTCTATCGGTTAGGACATGAGATTCTCAATCTCAAAAGACGGGTTCAATTCCCGTAGGGACTAT TGGGGTGTGTATTCCCCTGA
Downstream 100 bases:
>100_bases GCGTTTCGCTCCTTTTCTGTATTCCTTTCGTGGGATTGGTTTGCAGGGCACGTGGTGATATGCAGCAGCTTGTTCAACAG CAGCGGTTAGTTCTCAATCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 577; Mature: 577
Protein sequence:
>577_residues MRGYGDAMNEQLSTFDKLVETLSTEDAQRMLAGIGKALRTSEANAETPAKVKKKRAFARWDTREDSLAGETFFFRFWIGV KSFFRSSSVEALYEETLLQRLGNDLKAHYAQYIDVKEKTFTKVFYDKMGELRKTQVFFDSLLACYNSDKGDFYLLLSSFI TPVVYEQLMACSDPFAAQGDGTPSGLRASLLKRMDVALATLSGPHKTELYQAARAIEWMKVFCEVPVDRILLRFTVISPA SAVCPITILQSELEKLACVIHDSKHIPDAVLQGLFVLKSKTSLHDAQVDNAAHAAAFLKEASAALVVIKDLSHSIPIEDF VRFAGRNIRWQPRAIAGGEDWFVLFKKAWKKRFNEKWALWSTAQKRLVLKEQMLSLLGREQFSELTHRPWEGFWYQLVFR REMSFVFLKNLFEGAYARVVSPPLNVILAEGSFYRRDELIEYTDAVNVLEQMGAKIRNFEVRLSPVGEWGVAFSAQRKEH TVTMKSKGILEALIKVIDSEATVLLDATLKAFHCIGAMLASMIGASKTSAYATLTNWSDIRGSDNASFREQASQARAYVQ TASRALVEMENLETTHL
Sequences:
>Translated_577_residues MRGYGDAMNEQLSTFDKLVETLSTEDAQRMLAGIGKALRTSEANAETPAKVKKKRAFARWDTREDSLAGETFFFRFWIGV KSFFRSSSVEALYEETLLQRLGNDLKAHYAQYIDVKEKTFTKVFYDKMGELRKTQVFFDSLLACYNSDKGDFYLLLSSFI TPVVYEQLMACSDPFAAQGDGTPSGLRASLLKRMDVALATLSGPHKTELYQAARAIEWMKVFCEVPVDRILLRFTVISPA SAVCPITILQSELEKLACVIHDSKHIPDAVLQGLFVLKSKTSLHDAQVDNAAHAAAFLKEASAALVVIKDLSHSIPIEDF VRFAGRNIRWQPRAIAGGEDWFVLFKKAWKKRFNEKWALWSTAQKRLVLKEQMLSLLGREQFSELTHRPWEGFWYQLVFR REMSFVFLKNLFEGAYARVVSPPLNVILAEGSFYRRDELIEYTDAVNVLEQMGAKIRNFEVRLSPVGEWGVAFSAQRKEH TVTMKSKGILEALIKVIDSEATVLLDATLKAFHCIGAMLASMIGASKTSAYATLTNWSDIRGSDNASFREQASQARAYVQ TASRALVEMENLETTHL >Mature_577_residues MRGYGDAMNEQLSTFDKLVETLSTEDAQRMLAGIGKALRTSEANAETPAKVKKKRAFARWDTREDSLAGETFFFRFWIGV KSFFRSSSVEALYEETLLQRLGNDLKAHYAQYIDVKEKTFTKVFYDKMGELRKTQVFFDSLLACYNSDKGDFYLLLSSFI TPVVYEQLMACSDPFAAQGDGTPSGLRASLLKRMDVALATLSGPHKTELYQAARAIEWMKVFCEVPVDRILLRFTVISPA SAVCPITILQSELEKLACVIHDSKHIPDAVLQGLFVLKSKTSLHDAQVDNAAHAAAFLKEASAALVVIKDLSHSIPIEDF VRFAGRNIRWQPRAIAGGEDWFVLFKKAWKKRFNEKWALWSTAQKRLVLKEQMLSLLGREQFSELTHRPWEGFWYQLVFR REMSFVFLKNLFEGAYARVVSPPLNVILAEGSFYRRDELIEYTDAVNVLEQMGAKIRNFEVRLSPVGEWGVAFSAQRKEH TVTMKSKGILEALIKVIDSEATVLLDATLKAFHCIGAMLASMIGASKTSAYATLTNWSDIRGSDNASFREQASQARAYVQ TASRALVEMENLETTHL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y110_TREPA (O83148)
Other databases:
- EMBL: AE000520 - PIR: E71364 - RefSeq: NP_218550.1 - ProteinModelPortal: O83148 - IntAct: O83148 - GeneID: 2610876 - GenomeReviews: AE000520_GR - KEGG: tpa:TP0110 - NMPDR: fig|243276.1.peg.109 - TIGR: TP_0110 - HOGENOM: HBG731901 - OMA: SAGAYIN - ProtClustDB: CLSK218537 - BioCyc: TPAL243276:TP_0110-MONOMER
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65151; Mature: 65151
Theoretical pI: Translated: 8.52; Mature: 8.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGYGDAMNEQLSTFDKLVETLSTEDAQRMLAGIGKALRTSEANAETPAKVKKKRAFARW CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC DTREDSLAGETFFFRFWIGVKSFFRSSSVEALYEETLLQRLGNDLKAHYAQYIDVKEKTF CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH TKVFYDKMGELRKTQVFFDSLLACYNSDKGDFYLLLSSFITPVVYEQLMACSDPFAAQGD HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCC GTPSGLRASLLKRMDVALATLSGPHKTELYQAARAIEWMKVFCEVPVDRILLRFTVISPA CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC SAVCPITILQSELEKLACVIHDSKHIPDAVLQGLFVLKSKTSLHDAQVDNAAHAAAFLKE CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHH ASAALVVIKDLSHSIPIEDFVRFAGRNIRWQPRAIAGGEDWFVLFKKAWKKRFNEKWALW CCHHEEEEECCCCCCCHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCHHHH STAQKRLVLKEQMLSLLGREQFSELTHRPWEGFWYQLVFRREMSFVFLKNLFEGAYARVV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SPPLNVILAEGSFYRRDELIEYTDAVNVLEQMGAKIRNFEVRLSPVGEWGVAFSAQRKEH CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHCCCEEEEECCCCCCCCEECCCCCC TVTMKSKGILEALIKVIDSEATVLLDATLKAFHCIGAMLASMIGASKTSAYATLTNWSDI EEEEHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHC RGSDNASFREQASQARAYVQTASRALVEMENLETTHL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MRGYGDAMNEQLSTFDKLVETLSTEDAQRMLAGIGKALRTSEANAETPAKVKKKRAFARW CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC DTREDSLAGETFFFRFWIGVKSFFRSSSVEALYEETLLQRLGNDLKAHYAQYIDVKEKTF CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH TKVFYDKMGELRKTQVFFDSLLACYNSDKGDFYLLLSSFITPVVYEQLMACSDPFAAQGD HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCC GTPSGLRASLLKRMDVALATLSGPHKTELYQAARAIEWMKVFCEVPVDRILLRFTVISPA CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC SAVCPITILQSELEKLACVIHDSKHIPDAVLQGLFVLKSKTSLHDAQVDNAAHAAAFLKE CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHH ASAALVVIKDLSHSIPIEDFVRFAGRNIRWQPRAIAGGEDWFVLFKKAWKKRFNEKWALW CCHHEEEEECCCCCCCHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCHHHH STAQKRLVLKEQMLSLLGREQFSELTHRPWEGFWYQLVFRREMSFVFLKNLFEGAYARVV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SPPLNVILAEGSFYRRDELIEYTDAVNVLEQMGAKIRNFEVRLSPVGEWGVAFSAQRKEH CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHCCCEEEEECCCCCCCCEECCCCCC TVTMKSKGILEALIKVIDSEATVLLDATLKAFHCIGAMLASMIGASKTSAYATLTNWSDI EEEEHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHC RGSDNASFREQASQARAYVQTASRALVEMENLETTHL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9665876