| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189025317
Identifier: 189025317
GI number: 189025317
Start: 93174
End: 94454
Strand: Direct
Name: 189025317
Synonym: TPASS_0083
Alternate gene names: NA
Gene position: 93174-94454 (Clockwise)
Preceding gene: 189025315
Following gene: 189025320
Centisome position: 8.18
GC content: 54.18
Gene sequence:
>1281_bases ATGCCTCGCCCCTTCGATTTGGCGCGTCTTGAACAGGATTTGCGTCGGATCCCGGATCAAATCTTATGTGCGTGGGTTCC GCGTCATGTGTCACAGACGGGTGATGCGCTGTCTCTTTCTGAGTTATGGCTTTTGCACGACCGGTCTAGTCTTGCAAAAG AGGGACGTTTTGCGCGGGCAGATTTGAAAAAGGGTATCTACGTACCGGCGCATCACATTAAGGATCCTAAGCTTCGTGCA ATGCACTTCAAAACGATTGCGGACAATAAACTTAATATGCTTGTGTACGACATGAAGGATGAGCTTGGAATGGTGCGTTA TCAGTCGCAAGATCCATTTGTGCGATCGGTCGGTGCAGTTCGTCCTTTTGTTGATATGAAGACGTTTGTGAAGCAGGCAA AGGAAAAAAAGTTGTACCTAATAGCACGTATTGTGGTGTTTAAGGACAAGTATTTGTTCCGTTGGAATGGCTTTGAGCTT GCGGTTAAGGCGGGTGGTAAGCCTTGGCAGGGGTATAAAAACGGAGCGCTCCGTAAGGAAGAAATTCACGAGCATTGGGT GGATCCGTACAACGAAAAGGTGTGGCGGTACAATGTCGCCATCGCGAAAGAAGCAATTGAGTTTGGCTTCGATGAGGTAC AGTTCGATTATATTCGGTTCCCTACCGACGGAGATAACCTTCACCAGGCGGAGTATCCGGCAAGAGAGTCCGGGATGGAT AGGGAGAGTGCGTTGATGTCGTTCCTGGCGTACGCGCGCGAGCGCATAGACGCGCCAATCTCCATTGATATCTACGGAGC GAACGGGTGGTACCGTACAGGCGCGCGCACGGGCCAGGACGTGGAACTGCTAGCTGAGTATGTGGATGTGATCTGCCCGA TGTTCTATCCCAGCCACTTTAGCCAGAGCTTCCTAGCTTACGCGCCTGCGCAGGAGCGTCCCTATCGCATCTACTACTAC GGCGGTACCGCAACCGGGTGCTGGCCCGCAACCGGGTGGTCATCCGACCCTGGGTGCAGGCCTTCTACCTACCGGTCTCT TACGACCGGGCGTACTACGGCGAGGATTACGTGCAGCGCCAGGTGGCTGGCATCCGCGAATCAATCGATGAAGGATACAC GTACTGGAACAACTCAGGGCGTTACTCAGACGTCCGGCCCGACGGCGCGCGCCTCCGTTAGCCGCCAAGGCAACCCGGCG AGCGGACGCCCCTTGTTGGGCCGTTTTCCCACACAGGACCGAAAATCAGCGTCCGTCCTCTCAGGAGAAGAACTTCTCTA G
Upstream 100 bases:
>100_bases CGGCTGCGCTGAAAGATGCGCGCTGCATTGATGGATTGAGTGCGTCTGTCGTTCGCTCGTTGGGTGTCGGGATGGTAGTT TGTTTGAGATCCCCCTCATT
Downstream 100 bases:
>100_bases CTCGCCTATGTCCGCAGTCCTAAAAAGCTCGCTGCTGTCCTCGTCAAGGATAACAACCATTGGAACGCTACCTATACCGA AATCCGAGACCAACTTGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 426; Mature: 425
Protein sequence:
>426_residues MPRPFDLARLEQDLRRIPDQILCAWVPRHVSQTGDALSLSELWLLHDRSSLAKEGRFARADLKKGIYVPAHHIKDPKLRA MHFKTIADNKLNMLVYDMKDELGMVRYQSQDPFVRSVGAVRPFVDMKTFVKQAKEKKLYLIARIVVFKDKYLFRWNGFEL AVKAGGKPWQGYKNGALRKEEIHEHWVDPYNEKVWRYNVAIAKEAIEFGFDEVQFDYIRFPTDGDNLHQAEYPARESGMD RESALMSFLAYARERIDAPISIDIYGANGWYRTGARTGQDVELLAEYVDVICPMFYPSHFSQSFLAYAPAQERPYRIYYY GGTATGCWPATGWSSDPGCRPSTYRSLTTGRTTARITCSARWLASANQSMKDTRTGTTQGVTQTSGPTARASVSRQGNPA SGRPLLGRFPTQDRKSASVLSGEELL
Sequences:
>Translated_426_residues MPRPFDLARLEQDLRRIPDQILCAWVPRHVSQTGDALSLSELWLLHDRSSLAKEGRFARADLKKGIYVPAHHIKDPKLRA MHFKTIADNKLNMLVYDMKDELGMVRYQSQDPFVRSVGAVRPFVDMKTFVKQAKEKKLYLIARIVVFKDKYLFRWNGFEL AVKAGGKPWQGYKNGALRKEEIHEHWVDPYNEKVWRYNVAIAKEAIEFGFDEVQFDYIRFPTDGDNLHQAEYPARESGMD RESALMSFLAYARERIDAPISIDIYGANGWYRTGARTGQDVELLAEYVDVICPMFYPSHFSQSFLAYAPAQERPYRIYYY GGTATGCWPATGWSSDPGCRPSTYRSLTTGRTTARITCSARWLASANQSMKDTRTGTTQGVTQTSGPTARASVSRQGNPA SGRPLLGRFPTQDRKSASVLSGEELL >Mature_425_residues PRPFDLARLEQDLRRIPDQILCAWVPRHVSQTGDALSLSELWLLHDRSSLAKEGRFARADLKKGIYVPAHHIKDPKLRAM HFKTIADNKLNMLVYDMKDELGMVRYQSQDPFVRSVGAVRPFVDMKTFVKQAKEKKLYLIARIVVFKDKYLFRWNGFELA VKAGGKPWQGYKNGALRKEEIHEHWVDPYNEKVWRYNVAIAKEAIEFGFDEVQFDYIRFPTDGDNLHQAEYPARESGMDR ESALMSFLAYARERIDAPISIDIYGANGWYRTGARTGQDVELLAEYVDVICPMFYPSHFSQSFLAYAPAQERPYRIYYYG GTATGCWPATGWSSDPGCRPSTYRSLTTGRTTARITCSARWLASANQSMKDTRTGTTQGVTQTSGPTARASVSRQGNPAS GRPLLGRFPTQDRKSASVLSGEELL
Specific function: Unknown
COG id: COG1306
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48441; Mature: 48310
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRPFDLARLEQDLRRIPDQILCAWVPRHVSQTGDALSLSELWLLHDRSSLAKEGRFARA CCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHEEECHHHHHHCCCCHHH DLKKGIYVPAHHIKDPKLRAMHFKTIADNKLNMLVYDMKDELGMVRYQSQDPFVRSVGAV HHHCCCCCCHHCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCEEEECCCCCHHHHHHHH RPFVDMKTFVKQAKEKKLYLIARIVVFKDKYLFRWNGFELAVKAGGKPWQGYKNGALRKE CHHHHHHHHHHHHHHCHHHHEEEEEHCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCHH EIHEHWVDPYNEKVWRYNVAIAKEAIEFGFDEVQFDYIRFPTDGDNLHQAEYPARESGMD HHHHHHCCCCCCCEEEEEHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCC RESALMSFLAYARERIDAPISIDIYGANGWYRTGARTGQDVELLAEYVDVICPMFYPSHF HHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCCHHH SQSFLAYAPAQERPYRIYYYGGTATGCWPATGWSSDPGCRPSTYRSLTTGRTTARITCSA CCHHHEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEE RWLASANQSMKDTRTGTTQGVTQTSGPTARASVSRQGNPASGRPLLGRFPTQDRKSASVL HHHHHCCCCHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHC SGEELL CCCCCC >Mature Secondary Structure PRPFDLARLEQDLRRIPDQILCAWVPRHVSQTGDALSLSELWLLHDRSSLAKEGRFARA CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHEEECHHHHHHCCCCHHH DLKKGIYVPAHHIKDPKLRAMHFKTIADNKLNMLVYDMKDELGMVRYQSQDPFVRSVGAV HHHCCCCCCHHCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCEEEECCCCCHHHHHHHH RPFVDMKTFVKQAKEKKLYLIARIVVFKDKYLFRWNGFELAVKAGGKPWQGYKNGALRKE CHHHHHHHHHHHHHHCHHHHEEEEEHCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCHH EIHEHWVDPYNEKVWRYNVAIAKEAIEFGFDEVQFDYIRFPTDGDNLHQAEYPARESGMD HHHHHHCCCCCCCEEEEEHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCC RESALMSFLAYARERIDAPISIDIYGANGWYRTGARTGQDVELLAEYVDVICPMFYPSHF HHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCCHHH SQSFLAYAPAQERPYRIYYYGGTATGCWPATGWSSDPGCRPSTYRSLTTGRTTARITCSA CCHHHEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEE RWLASANQSMKDTRTGTTQGVTQTSGPTARASVSRQGNPASGRPLLGRFPTQDRKSASVL HHHHHCCCCHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHC SGEELL CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA