| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189025256
Identifier: 189025256
GI number: 189025256
Start: 25325
End: 27493
Strand: Direct
Name: 189025256
Synonym: TPASS_0022
Alternate gene names: NA
Gene position: 25325-27493 (Clockwise)
Preceding gene: 189025255
Following gene: 189025257
Centisome position: 2.22
GC content: 50.02
Gene sequence:
>2169_bases GTGCGTTCCCCGTGCAACGCTCGAGCTGCTGACAATTTTTTTTTAGAACGTGTTGCCCAGGCGGAGATAAGAACACGTCT ACTGAATTTAGAAGAACGTCTTATTCTTTACCGCATTCCTCAGATGCCTGGTGAGGTTACACAGGCAGAAGTCGCGAGCG TTGCGCAGAATGGTAGGGTGCGGCAAACGCCGTGTTATGGTATCAATCCTCTGTTGCAAAAAGCATTGAGTACGGTAGCT GGACTCAATCTTTTTCTCATTCCGCAAAAGCGGATGCGTCCATCCGCACAGTTATTGACAACAGATTTGATGCTGTGCGC ATTGTATTCGTTTTTTACGCACGGGGAAAATTTATTAAAAGTCGATGGGACGTTTAGGAAAAAGGCATTTGTTATGTTCC AGGCATTGTTTCCTGTTGATCCGGATGTGGTGAGTGTGGCACTCCCTGCATATCTGCAGAGAGCAGGGGAGGAAAGGGGT ACATCACGTCTTTTACAGGAAGGTCGGCGCGTCTTGGAACATCTGGGATTGATTGTCTGCGAATCAGCACAGGTGCATGT GCAAGATAAACGGTGGGCTTCTTTTTTCTCCTTAACTGCTCTGGAACGTGCGGTGTATTTGACAGTTGCCAGTACGGCTA TTCTGCGCAAAGAGGTGCTCGTACAGCGAGCGCAGGCTTTGCGTACACTTCTCTGTGTGTTGCACCCAGATGCGCAATAC GCACCTGAAGATCTAACACGCGTGTATCGTATCTTGGTGGAAGAGGCAGCACCATCTGTTGCTGCTGATTTTTTCTCTTC TTTGTCTTTGTCCAAAGATACAATGCTGCAAAAGCGTAAAGGAGCTTTACATGATTCATCGGTTTTTTCTATGCAGTCGG CGATCACGGCTATACGCACGGCCCAGCTTTTTGGGTTGTTGTGTGTGAAAGATGGACTGTGCGCGTTGAATGAGGCTCTA TTTAAAGGACAGTACACGCGTGGGCCAGGAATGGTCTTGTCAGCGACGGCAGAGTTAACCATTTTCCCCGATGGAGATAT GCAAGGGGTTTTGCCAATTTTATCCTGTGCGCATGTCTGCTCACTACAAACAGTTGCCACGTTTGAGCTCAATAAAAAAA GCTGTACCACTGGCTTTGCGCGCGGATTAACAGTGCAGGCACTTGCACAGGCTTTAGAATGTAAAACAGGTGAGCAGGTG CCACAGAATATACTATCTTCTTTCCGGCAGTGGTATGCACAGATAACCGCGTTGACCTTAAGACGCGGCTTTGTCATGCA GGTTGATTCATCTCAGCAAGCTTTTTTTGAATCTGGCGGGCCACTGCACCCGCTAGTGCGCACGCGTCTTGCAGAAGGAG TGTACTTTTTTGATGAATGCCAAGAGTGTATGTTGTATCAGGCGCTCGCGCGAGCGCGTCTGTCCTACCTGTGCGAGCCA ATTGATACAGCCACCCCGTTATTCCGCCCTGGTGAGCAGGGTGCACGTGCGCTCCATGTGCCTTCCTTTTCTTTTCCAGT GCGGTCTGCTCGGGGAGTCTCCGAGGAATCAACGCGAGATTTTGCACATTTAGGTGCCTTTGTGTTGGAAACTCCGAACG TTTCGTGCACGCACAGTGCTGCAGATACTCCGTCTATTTCAGAACAGACCGGTGGGGTGGCTCACGTGCAGAGCGAAGAG GATGTAGATCCGTCCACGTCTGGTGCAACGGGTAAGTATTGGGACAAGGCACAATGGCGCAAGGTGCAACGGATGCGACG TGCTGTGCGGCTGCAGCGGCTCAAAGAGTTTGAGGCGCACCTGCAACAACTAAAATTGGACGCAACAGAGCAGACGGAGC TACGTGCCCGCTTGCAACGGGGGTTGATTCTGGATAGAATGCAACTTTCGTCCGAAACGATCCGCAGGGAGAGAACGGAA GCGAGCGGGGTTGATTTTTTAGGCAAGTATCGTCTTGCAGAGTGTGCGTTACGTTCTGGTGCTTTACTTGAGATTGAGAC TAGTTCAGGGCAGTCAGTGCATAAGATAGTGGGTACGGTGTGCGCAATTGAAAAATGCGAAGAGGATGCGTTGCTTCACG TGTGTGTACACGCAGAACTTCCCCCTGAGCGAGTATCGATTGCGCGCGCGTCCAGGATAGTGCTACTGAAAAATTCTATT TTTTCTTGA
Upstream 100 bases:
>100_bases TTGTTCAACAACTTAGTGCCTTCCTGCAAAGAAAGTCTATTCAGAACGCTGTGGTGCAGATGCTTGATGAACTCGACTTG TTATTTATTTCTGTTGTTAT
Downstream 100 bases:
>100_bases GTCTGTTCTGAAGGGGATCCTTTTGTCTCTTGTAAAAAGGAATAGACGAGCGGGTAGGATATGAGTCGTAGGAAACAGGG ACGAGAGTTATTCAACAGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 722; Mature: 722
Protein sequence:
>722_residues MRSPCNARAADNFFLERVAQAEIRTRLLNLEERLILYRIPQMPGEVTQAEVASVAQNGRVRQTPCYGINPLLQKALSTVA GLNLFLIPQKRMRPSAQLLTTDLMLCALYSFFTHGENLLKVDGTFRKKAFVMFQALFPVDPDVVSVALPAYLQRAGEERG TSRLLQEGRRVLEHLGLIVCESAQVHVQDKRWASFFSLTALERAVYLTVASTAILRKEVLVQRAQALRTLLCVLHPDAQY APEDLTRVYRILVEEAAPSVAADFFSSLSLSKDTMLQKRKGALHDSSVFSMQSAITAIRTAQLFGLLCVKDGLCALNEAL FKGQYTRGPGMVLSATAELTIFPDGDMQGVLPILSCAHVCSLQTVATFELNKKSCTTGFARGLTVQALAQALECKTGEQV PQNILSSFRQWYAQITALTLRRGFVMQVDSSQQAFFESGGPLHPLVRTRLAEGVYFFDECQECMLYQALARARLSYLCEP IDTATPLFRPGEQGARALHVPSFSFPVRSARGVSEESTRDFAHLGAFVLETPNVSCTHSAADTPSISEQTGGVAHVQSEE DVDPSTSGATGKYWDKAQWRKVQRMRRAVRLQRLKEFEAHLQQLKLDATEQTELRARLQRGLILDRMQLSSETIRRERTE ASGVDFLGKYRLAECALRSGALLEIETSSGQSVHKIVGTVCAIEKCEEDALLHVCVHAELPPERVSIARASRIVLLKNSI FS
Sequences:
>Translated_722_residues MRSPCNARAADNFFLERVAQAEIRTRLLNLEERLILYRIPQMPGEVTQAEVASVAQNGRVRQTPCYGINPLLQKALSTVA GLNLFLIPQKRMRPSAQLLTTDLMLCALYSFFTHGENLLKVDGTFRKKAFVMFQALFPVDPDVVSVALPAYLQRAGEERG TSRLLQEGRRVLEHLGLIVCESAQVHVQDKRWASFFSLTALERAVYLTVASTAILRKEVLVQRAQALRTLLCVLHPDAQY APEDLTRVYRILVEEAAPSVAADFFSSLSLSKDTMLQKRKGALHDSSVFSMQSAITAIRTAQLFGLLCVKDGLCALNEAL FKGQYTRGPGMVLSATAELTIFPDGDMQGVLPILSCAHVCSLQTVATFELNKKSCTTGFARGLTVQALAQALECKTGEQV PQNILSSFRQWYAQITALTLRRGFVMQVDSSQQAFFESGGPLHPLVRTRLAEGVYFFDECQECMLYQALARARLSYLCEP IDTATPLFRPGEQGARALHVPSFSFPVRSARGVSEESTRDFAHLGAFVLETPNVSCTHSAADTPSISEQTGGVAHVQSEE DVDPSTSGATGKYWDKAQWRKVQRMRRAVRLQRLKEFEAHLQQLKLDATEQTELRARLQRGLILDRMQLSSETIRRERTE ASGVDFLGKYRLAECALRSGALLEIETSSGQSVHKIVGTVCAIEKCEEDALLHVCVHAELPPERVSIARASRIVLLKNSI FS >Mature_722_residues MRSPCNARAADNFFLERVAQAEIRTRLLNLEERLILYRIPQMPGEVTQAEVASVAQNGRVRQTPCYGINPLLQKALSTVA GLNLFLIPQKRMRPSAQLLTTDLMLCALYSFFTHGENLLKVDGTFRKKAFVMFQALFPVDPDVVSVALPAYLQRAGEERG TSRLLQEGRRVLEHLGLIVCESAQVHVQDKRWASFFSLTALERAVYLTVASTAILRKEVLVQRAQALRTLLCVLHPDAQY APEDLTRVYRILVEEAAPSVAADFFSSLSLSKDTMLQKRKGALHDSSVFSMQSAITAIRTAQLFGLLCVKDGLCALNEAL FKGQYTRGPGMVLSATAELTIFPDGDMQGVLPILSCAHVCSLQTVATFELNKKSCTTGFARGLTVQALAQALECKTGEQV PQNILSSFRQWYAQITALTLRRGFVMQVDSSQQAFFESGGPLHPLVRTRLAEGVYFFDECQECMLYQALARARLSYLCEP IDTATPLFRPGEQGARALHVPSFSFPVRSARGVSEESTRDFAHLGAFVLETPNVSCTHSAADTPSISEQTGGVAHVQSEE DVDPSTSGATGKYWDKAQWRKVQRMRRAVRLQRLKEFEAHLQQLKLDATEQTELRARLQRGLILDRMQLSSETIRRERTE ASGVDFLGKYRLAECALRSGALLEIETSSGQSVHKIVGTVCAIEKCEEDALLHVCVHAELPPERVSIARASRIVLLKNSI FS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y022_TREPA (O83066)
Other databases:
- EMBL: AE000520 - PIR: B71376 - RefSeq: NP_218462.1 - ProteinModelPortal: O83066 - GeneID: 2610828 - GenomeReviews: AE000520_GR - KEGG: tpa:TP0022 - NMPDR: fig|243276.1.peg.21 - TIGR: TP_0022 - HOGENOM: HBG731929 - OMA: ISIAHIS - ProtClustDB: CLSK218479 - BioCyc: TPAL243276:TP_0022-MONOMER
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80090; Mature: 80090
Theoretical pI: Translated: 8.24; Mature: 8.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSPCNARAADNFFLERVAQAEIRTRLLNLEERLILYRIPQMPGEVTQAEVASVAQNGRV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCE RQTPCYGINPLLQKALSTVAGLNLFLIPQKRMRPSAQLLTTDLMLCALYSFFTHGENLLK ECCCCCCCCHHHHHHHHHHHCCEEEEECHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE VDGTFRKKAFVMFQALFPVDPDVVSVALPAYLQRAGEERGTSRLLQEGRRVLEHLGLIVC ECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE ESAQVHVQDKRWASFFSLTALERAVYLTVASTAILRKEVLVQRAQALRTLLCVLHPDAQY CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC APEDLTRVYRILVEEAAPSVAADFFSSLSLSKDTMLQKRKGALHDSSVFSMQSAITAIRT CHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH AQLFGLLCVKDGLCALNEALFKGQYTRGPGMVLSATAELTIFPDGDMQGVLPILSCAHVC HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHH SLQTVATFELNKKSCTTGFARGLTVQALAQALECKTGEQVPQNILSSFRQWYAQITALTL HHHHHEEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH RRGFVMQVDSSQQAFFESGGPLHPLVRTRLAEGVYFFDECQECMLYQALARARLSYLCEP HCCEEEEECCCHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC IDTATPLFRPGEQGARALHVPSFSFPVRSARGVSEESTRDFAHLGAFVLETPNVSCTHSA CCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHEEECCCCCCCCCC ADTPSISEQTGGVAHVQSEEDVDPSTSGATGKYWDKAQWRKVQRMRRAVRLQRLKEFEAH CCCCCCCHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LQQLKLDATEQTELRARLQRGLILDRMQLSSETIRRERTEASGVDFLGKYRLAECALRSG HHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC ALLEIETSSGQSVHKIVGTVCAIEKCEEDALLHVCVHAELPPERVSIARASRIVLLKNSI CEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHEEEEECCCC FS CC >Mature Secondary Structure MRSPCNARAADNFFLERVAQAEIRTRLLNLEERLILYRIPQMPGEVTQAEVASVAQNGRV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCE RQTPCYGINPLLQKALSTVAGLNLFLIPQKRMRPSAQLLTTDLMLCALYSFFTHGENLLK ECCCCCCCCHHHHHHHHHHHCCEEEEECHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE VDGTFRKKAFVMFQALFPVDPDVVSVALPAYLQRAGEERGTSRLLQEGRRVLEHLGLIVC ECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE ESAQVHVQDKRWASFFSLTALERAVYLTVASTAILRKEVLVQRAQALRTLLCVLHPDAQY CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC APEDLTRVYRILVEEAAPSVAADFFSSLSLSKDTMLQKRKGALHDSSVFSMQSAITAIRT CHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH AQLFGLLCVKDGLCALNEALFKGQYTRGPGMVLSATAELTIFPDGDMQGVLPILSCAHVC HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHH SLQTVATFELNKKSCTTGFARGLTVQALAQALECKTGEQVPQNILSSFRQWYAQITALTL HHHHHEEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH RRGFVMQVDSSQQAFFESGGPLHPLVRTRLAEGVYFFDECQECMLYQALARARLSYLCEP HCCEEEEECCCHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC IDTATPLFRPGEQGARALHVPSFSFPVRSARGVSEESTRDFAHLGAFVLETPNVSCTHSA CCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHEEECCCCCCCCCC ADTPSISEQTGGVAHVQSEEDVDPSTSGATGKYWDKAQWRKVQRMRRAVRLQRLKEFEAH CCCCCCCHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LQQLKLDATEQTELRARLQRGLILDRMQLSSETIRRERTEASGVDFLGKYRLAECALRSG HHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC ALLEIETSSGQSVHKIVGTVCAIEKCEEDALLHVCVHAELPPERVSIARASRIVLLKNSI CEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHEEEEECCCC FS CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9665876