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The map label for this gene is atpD [H]

Identifier: 188587434

GI number: 188587434

Start: 3077486

End: 3078913

Strand: Reverse

Name: atpD [H]

Synonym: Nther_2844

Alternate gene names: 188587434

Gene position: 3078913-3077486 (Counterclockwise)

Preceding gene: 188587435

Following gene: 188587433

Centisome position: 97.26

GC content: 42.72

Gene sequence:

>1428_bases
ATGAATGTCGGGAAGGTACAGCAGATTATCGGTCCTGCAGTTGACATTAGATTTGAAAAGGGAAAACTTCCCGAACTGTA
TAATGCCATTGATATAAAAGCCGGTCTAAATGATCGGGGAGAACCTGTTTCTCATGAAGAAGGTTCAAGAAAAATAGAGG
TTACTCTTGAAGTGGCTCAACACCTTGGTGACGAAGTAGTCCGGTGTATTGCCATGGGGTCAACCGATGGTATTGTACGG
GGGATGGAAGCTTATGACACCGGGCAGCCTATTACTGTACCAGTTGGACGCTCAACACTGGGAAGAGTGTTCAATATTAC
CGGTGATACCATTGACGGGCAAGGAGAAGTAGAAGGTGAAGATTACTATCCTATTCATCGAGATTCACCTAAATTTGAAG
ATCAAGAAACATCGACAGAAATTTTGGAAACAGGAATTAAAGTTTTAGACCTTCTTGTACCCTATGCCCGAGGTGGAAAA
ATTGGCCTGTTCGGAGGAGCAGGAGTTGGAAAAACAGTTCTTATTCAAGAGTTAATTCGTAATATTGCTTACGAACACGG
TGGTTTTTCAGTATTTTCAGGTGTTGGTGAACGCACCAGAGAAGGTAATGACTTAGTGCTAGAAATGAGTGAATCTGGGG
TAATTGACAAAACAGCTTTAGTATTTGGTCAGATGAATGAACCACCAGGTGCTAGAATGCGAGTTGGACTAACAGGTCTA
ACCATGGCTGAATATTTCCGTGATAACGAAGGTCAAGACGTTCTGTTGTTTATCGACAATATTTTCAGATTTACTCAGGC
AGGTCAGGAAGTGTCTGCTCTAATGGGCCGTATGCCATCCGCTGTTGGTTATCAGCCCACATTACAGACTGAGATGGGAG
AACTACAAGAACGGATCACTTCCACTAAGAAAGGTTCTGTAACTTCAATTCAAGCTATCTATGTGCCTGCGGATGACCCA
ACAGATCCAGCACCAGCAACTACATTTGCTCACTTGGACGCCAGCACTTATTTGGAGCGTTCTATAGCTGAGATGGGAAT
TTATCCGGCAGTGGATCCCCTAGTTTCAAGTTCTAGGATTTTGGATCCGCAAATAGTTGGGCAAGAACACTATGATGTAG
CCAGAGGCGTTCAGCAAGTACTGCAGCGTTATAAAGAACTTCAAGATATTATTGCAATTCTTGGTATGGATGAATTATCC
GATGAAGACAAACTTACTGTATCTAGGGCGAGAAAGATTCAGAGGTTCTTAAGTCAGCCTTTCTTCGTTGCGGAACAGTT
TACGAATATGCCGGGTAAATATGTACCAGTTAAAGAAACGGTTCGTGGATTTAGAGAAATTCTAGACGGAAAACATGACG
ATTTACCAGAGACTGCTTTTTACATGGTGGGAACCATTGACGAAGCCGTGGAAAAAGCAGAAGAATAA

Upstream 100 bases:

>100_bases
ATAATAAAGCCCGACAAGGCGCCATAACCCAAGAAATCTTAGAAGTTGTCAGTGGAGCTGAAGCAGCCAAGTAGAATGGG
AAAAGGGAGGTAATAGCAGA

Downstream 100 bases:

>100_bases
CTGTCTCCCGGGAAAGGGTGTTGTTAGATGGCTAGAAAGGAATTTCAATTGGAGATAGTCACCCCAGAACGAATTGTGTA
TTCTGATAAAGTGGTGTCTA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MNVGKVQQIIGPAVDIRFEKGKLPELYNAIDIKAGLNDRGEPVSHEEGSRKIEVTLEVAQHLGDEVVRCIAMGSTDGIVR
GMEAYDTGQPITVPVGRSTLGRVFNITGDTIDGQGEVEGEDYYPIHRDSPKFEDQETSTEILETGIKVLDLLVPYARGGK
IGLFGGAGVGKTVLIQELIRNIAYEHGGFSVFSGVGERTREGNDLVLEMSESGVIDKTALVFGQMNEPPGARMRVGLTGL
TMAEYFRDNEGQDVLLFIDNIFRFTQAGQEVSALMGRMPSAVGYQPTLQTEMGELQERITSTKKGSVTSIQAIYVPADDP
TDPAPATTFAHLDASTYLERSIAEMGIYPAVDPLVSSSRILDPQIVGQEHYDVARGVQQVLQRYKELQDIIAILGMDELS
DEDKLTVSRARKIQRFLSQPFFVAEQFTNMPGKYVPVKETVRGFREILDGKHDDLPETAFYMVGTIDEAVEKAEE

Sequences:

>Translated_475_residues
MNVGKVQQIIGPAVDIRFEKGKLPELYNAIDIKAGLNDRGEPVSHEEGSRKIEVTLEVAQHLGDEVVRCIAMGSTDGIVR
GMEAYDTGQPITVPVGRSTLGRVFNITGDTIDGQGEVEGEDYYPIHRDSPKFEDQETSTEILETGIKVLDLLVPYARGGK
IGLFGGAGVGKTVLIQELIRNIAYEHGGFSVFSGVGERTREGNDLVLEMSESGVIDKTALVFGQMNEPPGARMRVGLTGL
TMAEYFRDNEGQDVLLFIDNIFRFTQAGQEVSALMGRMPSAVGYQPTLQTEMGELQERITSTKKGSVTSIQAIYVPADDP
TDPAPATTFAHLDASTYLERSIAEMGIYPAVDPLVSSSRILDPQIVGQEHYDVARGVQQVLQRYKELQDIIAILGMDELS
DEDKLTVSRARKIQRFLSQPFFVAEQFTNMPGKYVPVKETVRGFREILDGKHDDLPETAFYMVGTIDEAVEKAEE
>Mature_475_residues
MNVGKVQQIIGPAVDIRFEKGKLPELYNAIDIKAGLNDRGEPVSHEEGSRKIEVTLEVAQHLGDEVVRCIAMGSTDGIVR
GMEAYDTGQPITVPVGRSTLGRVFNITGDTIDGQGEVEGEDYYPIHRDSPKFEDQETSTEILETGIKVLDLLVPYARGGK
IGLFGGAGVGKTVLIQELIRNIAYEHGGFSVFSGVGERTREGNDLVLEMSESGVIDKTALVFGQMNEPPGARMRVGLTGL
TMAEYFRDNEGQDVLLFIDNIFRFTQAGQEVSALMGRMPSAVGYQPTLQTEMGELQERITSTKKGSVTSIQAIYVPADDP
TDPAPATTFAHLDASTYLERSIAEMGIYPAVDPLVSSSRILDPQIVGQEHYDVARGVQQVLQRYKELQDIIAILGMDELS
DEDKLTVSRARKIQRFLSQPFFVAEQFTNMPGKYVPVKETVRGFREILDGKHDDLPETAFYMVGTIDEAVEKAEE

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=478, Percent_Identity=66.7364016736402, Blast_Score=645, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=322, Percent_Identity=28.5714285714286, Blast_Score=125, Evalue=7e-29,
Organism=Homo sapiens, GI19913428, Length=391, Percent_Identity=25.8312020460358, Blast_Score=123, Evalue=4e-28,
Organism=Homo sapiens, GI19913426, Length=391, Percent_Identity=25.5754475703325, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI50345984, Length=389, Percent_Identity=25.4498714652956, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI4757810, Length=389, Percent_Identity=25.4498714652956, Blast_Score=100, Evalue=5e-21,
Organism=Escherichia coli, GI1790170, Length=475, Percent_Identity=64.8421052631579, Blast_Score=633, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=395, Percent_Identity=27.5949367088608, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1790172, Length=391, Percent_Identity=25.8312020460358, Blast_Score=130, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI25144756, Length=478, Percent_Identity=65.4811715481172, Blast_Score=631, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=348, Percent_Identity=28.1609195402299, Blast_Score=129, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI17510931, Length=349, Percent_Identity=26.647564469914, Blast_Score=126, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17570191, Length=349, Percent_Identity=26.0744985673352, Blast_Score=122, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI71988080, Length=445, Percent_Identity=24.9438202247191, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71988063, Length=445, Percent_Identity=24.9438202247191, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71988074, Length=343, Percent_Identity=23.9067055393586, Blast_Score=86, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=472, Percent_Identity=68.2203389830508, Blast_Score=646, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=440, Percent_Identity=27.2727272727273, Blast_Score=127, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6319370, Length=428, Percent_Identity=25.7009345794392, Blast_Score=104, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6320016, Length=254, Percent_Identity=28.740157480315, Blast_Score=94, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24638766, Length=477, Percent_Identity=65.8280922431866, Blast_Score=629, Evalue=1e-180,
Organism=Drosophila melanogaster, GI28574560, Length=476, Percent_Identity=64.0756302521009, Blast_Score=611, Evalue=1e-175,
Organism=Drosophila melanogaster, GI20129479, Length=332, Percent_Identity=30.1204819277108, Blast_Score=130, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24583988, Length=351, Percent_Identity=26.7806267806268, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24583986, Length=351, Percent_Identity=26.7806267806268, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24583984, Length=351, Percent_Identity=26.7806267806268, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24583992, Length=350, Percent_Identity=26.8571428571429, Blast_Score=126, Evalue=4e-29,
Organism=Drosophila melanogaster, GI281361666, Length=352, Percent_Identity=26.4204545454545, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24646341, Length=352, Percent_Identity=26.4204545454545, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI17136796, Length=352, Percent_Identity=26.4204545454545, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24658560, Length=364, Percent_Identity=25.5494505494505, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24638768, Length=105, Percent_Identity=41.9047619047619, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 52189; Mature: 52189

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVGKVQQIIGPAVDIRFEKGKLPELYNAIDIKAGLNDRGEPVSHEEGSRKIEVTLEVAQ
CCCHHHHHHHCCHHEEEECCCCCCHHHHHEEEECCCCCCCCCCCCCCCCCEEEEEHHHHH
HLGDEVVRCIAMGSTDGIVRGMEAYDTGQPITVPVGRSTLGRVFNITGDTIDGQGEVEGE
HHHHHHHHHHHCCCCCHHHHCCHHHCCCCCEEEECCCHHHCCEEECCCCCCCCCCCCCCC
DYYPIHRDSPKFEDQETSTEILETGIKVLDLLVPYARGGKIGLFGGAGVGKTVLIQELIR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
NIAYEHGGFSVFSGVGERTREGNDLVLEMSESGVIDKTALVFGQMNEPPGARMRVGLTGL
HHHHCCCCHHHHHHCCHHCCCCCCEEEEECCCCCCCHHHHHEECCCCCCCCEEEEECCHH
TMAEYFRDNEGQDVLLFIDNIFRFTQAGQEVSALMGRMPSAVGYQPTLQTEMGELQERIT
HHHHHHHCCCCCEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
STKKGSVTSIQAIYVPADDPTDPAPATTFAHLDASTYLERSIAEMGIYPAVDPLVSSSRI
CCCCCCCEEEEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCHHHHHCCCCC
LDPQIVGQEHYDVARGVQQVLQRYKELQDIIAILGMDELSDEDKLTVSRARKIQRFLSQP
CCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCC
FFVAEQFTNMPGKYVPVKETVRGFREILDGKHDDLPETAFYMVGTIDEAVEKAEE
HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNVGKVQQIIGPAVDIRFEKGKLPELYNAIDIKAGLNDRGEPVSHEEGSRKIEVTLEVAQ
CCCHHHHHHHCCHHEEEECCCCCCHHHHHEEEECCCCCCCCCCCCCCCCCEEEEEHHHHH
HLGDEVVRCIAMGSTDGIVRGMEAYDTGQPITVPVGRSTLGRVFNITGDTIDGQGEVEGE
HHHHHHHHHHHCCCCCHHHHCCHHHCCCCCEEEECCCHHHCCEEECCCCCCCCCCCCCCC
DYYPIHRDSPKFEDQETSTEILETGIKVLDLLVPYARGGKIGLFGGAGVGKTVLIQELIR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
NIAYEHGGFSVFSGVGERTREGNDLVLEMSESGVIDKTALVFGQMNEPPGARMRVGLTGL
HHHHCCCCHHHHHHCCHHCCCCCCEEEEECCCCCCCHHHHHEECCCCCCCCEEEEECCHH
TMAEYFRDNEGQDVLLFIDNIFRFTQAGQEVSALMGRMPSAVGYQPTLQTEMGELQERIT
HHHHHHHCCCCCEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
STKKGSVTSIQAIYVPADDPTDPAPATTFAHLDASTYLERSIAEMGIYPAVDPLVSSSRI
CCCCCCCEEEEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCHHHHHCCCCC
LDPQIVGQEHYDVARGVQQVLQRYKELQDIIAILGMDELSDEDKLTVSRARKIQRFLSQP
CCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCC
FFVAEQFTNMPGKYVPVKETVRGFREILDGKHDDLPETAFYMVGTIDEAVEKAEE
HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA