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The map label for this gene is dppB [H]

Identifier: 188587350

GI number: 188587350

Start: 2977021

End: 2977941

Strand: Reverse

Name: dppB [H]

Synonym: Nther_2757

Alternate gene names: 188587350

Gene position: 2977941-2977021 (Counterclockwise)

Preceding gene: 188587351

Following gene: 188587349

Centisome position: 94.07

GC content: 41.15

Gene sequence:

>921_bases
GTGCACATTTATATAATAAAAAGATTGCTTCAAGCAATTCCGGTACTTTTTATCGTAACTATAATAACATTTTCACTGGT
ACACATCATGCCTGGCGATCCAGCGCTAATTATGGCGGGAGAAGATGCTGATCCCGAAACGGTGGAAAGAATGCGCGAAG
CTATGGGTCTTCACAGGCCAATTCATGAACAGTACTTGGACTGGCTGAGTGGAGTATTACAGGGTGACCTTGGTACCTCC
TTACGTGATCATCGACCAGTTTTACCGTCGATTCTGCAAAGGCTTCCTGCGACTCTTCACCTTGTATTGGCATCCTTTGT
AGTATCTTTTTCAATTGGAATTCCCATTGGAATTTTGTCGGCAGTCAAGCAAAATACAGTTATTGATTCCATTGCTCGGG
TGTTTGCTCTTTTGGGAATTTCCTTACCTAACTTTTGGCTGGGATTGATGCTTATGTTTATATTTTCACATAGATTACAA
TTGCTACCAGCCAGTGGTAGTGGGACGATTTGGCATTTAATTATGCCTGCCATTGCCTTGGGAACAGCCTCTGCAGGTTT
GATTACCCGATTGACGCGTTCCAGTATGTTAGAAGTTATTAGACAGGATTATGTTAGAACTGCCAGATCTAAAGGGTTGG
GAGAAAAAGCAATTATATATAAACATGCTTTGAAAAACGCTATGCTACCAGTTGTGACTATAGTTGGTTTACAGTTAGCT
GCTAGACTCGGTGGTTCGGTGATTGTTGAAACGGTTTTCGCCTATCCCGGAATGGGGAGATTTGCTTTTGAACGCATGAT
GGCAAGAGACATGCCTATGATCATGGGGATTCTGTTTGTATTTGCAGTAATATTCATAGTGATTAACTTGATAACTGATA
TCTGCTACGGATTTTTAGATCCAAGGATAAGATATGACTAA

Upstream 100 bases:

>100_bases
GGGGCGGGGCTTAACTCCCCCGCCCCTAAATACATGGTAGTTCCAAATACAAGTATATTCCTAAATAATATTCGTTGTAA
TATTGGAAGGAGGTAGGTTC

Downstream 100 bases:

>100_bases
ATGTGATAAGGGGGGACAGGTTTTATGTCAAATCCACAAGAAGAGACTTTAAAAAAAATTGACAAATTGAAAACGGAAAA
TACCAAAACTAAAAATAAAA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MHIYIIKRLLQAIPVLFIVTIITFSLVHIMPGDPALIMAGEDADPETVERMREAMGLHRPIHEQYLDWLSGVLQGDLGTS
LRDHRPVLPSILQRLPATLHLVLASFVVSFSIGIPIGILSAVKQNTVIDSIARVFALLGISLPNFWLGLMLMFIFSHRLQ
LLPASGSGTIWHLIMPAIALGTASAGLITRLTRSSMLEVIRQDYVRTARSKGLGEKAIIYKHALKNAMLPVVTIVGLQLA
ARLGGSVIVETVFAYPGMGRFAFERMMARDMPMIMGILFVFAVIFIVINLITDICYGFLDPRIRYD

Sequences:

>Translated_306_residues
MHIYIIKRLLQAIPVLFIVTIITFSLVHIMPGDPALIMAGEDADPETVERMREAMGLHRPIHEQYLDWLSGVLQGDLGTS
LRDHRPVLPSILQRLPATLHLVLASFVVSFSIGIPIGILSAVKQNTVIDSIARVFALLGISLPNFWLGLMLMFIFSHRLQ
LLPASGSGTIWHLIMPAIALGTASAGLITRLTRSSMLEVIRQDYVRTARSKGLGEKAIIYKHALKNAMLPVVTIVGLQLA
ARLGGSVIVETVFAYPGMGRFAFERMMARDMPMIMGILFVFAVIFIVINLITDICYGFLDPRIRYD
>Mature_306_residues
MHIYIIKRLLQAIPVLFIVTIITFSLVHIMPGDPALIMAGEDADPETVERMREAMGLHRPIHEQYLDWLSGVLQGDLGTS
LRDHRPVLPSILQRLPATLHLVLASFVVSFSIGIPIGILSAVKQNTVIDSIARVFALLGISLPNFWLGLMLMFIFSHRLQ
LLPASGSGTIWHLIMPAIALGTASAGLITRLTRSSMLEVIRQDYVRTARSKGLGEKAIIYKHALKNAMLPVVTIVGLQLA
ARLGGSVIVETVFAYPGMGRFAFERMMARDMPMIMGILFVFAVIFIVINLITDICYGFLDPRIRYD

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=303, Percent_Identity=42.9042904290429, Blast_Score=270, Evalue=1e-73,
Organism=Escherichia coli, GI1789965, Length=335, Percent_Identity=40, Blast_Score=262, Evalue=2e-71,
Organism=Escherichia coli, GI1789888, Length=304, Percent_Identity=39.4736842105263, Blast_Score=227, Evalue=8e-61,
Organism=Escherichia coli, GI1787761, Length=326, Percent_Identity=38.6503067484663, Blast_Score=212, Evalue=2e-56,
Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=33.6601307189542, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=28.7292817679558, Blast_Score=170, Evalue=9e-44,
Organism=Escherichia coli, GI1787550, Length=280, Percent_Identity=29.6428571428571, Blast_Score=140, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33900; Mature: 33900

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIYIIKRLLQAIPVLFIVTIITFSLVHIMPGDPALIMAGEDADPETVERMREAMGLHRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCC
IHEQYLDWLSGVLQGDLGTSLRDHRPVLPSILQRLPATLHLVLASFVVSFSIGIPIGILS
HHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AVKQNTVIDSIARVFALLGISLPNFWLGLMLMFIFSHRLQLLPASGSGTIWHLIMPAIAL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHH
GTASAGLITRLTRSSMLEVIRQDYVRTARSKGLGEKAIIYKHALKNAMLPVVTIVGLQLA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ARLGGSVIVETVFAYPGMGRFAFERMMARDMPMIMGILFVFAVIFIVINLITDICYGFLD
HHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PRIRYD
CCCCCC
>Mature Secondary Structure
MHIYIIKRLLQAIPVLFIVTIITFSLVHIMPGDPALIMAGEDADPETVERMREAMGLHRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCC
IHEQYLDWLSGVLQGDLGTSLRDHRPVLPSILQRLPATLHLVLASFVVSFSIGIPIGILS
HHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AVKQNTVIDSIARVFALLGISLPNFWLGLMLMFIFSHRLQLLPASGSGTIWHLIMPAIAL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHH
GTASAGLITRLTRSSMLEVIRQDYVRTARSKGLGEKAIIYKHALKNAMLPVVTIVGLQLA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ARLGGSVIVETVFAYPGMGRFAFERMMARDMPMIMGILFVFAVIFIVINLITDICYGFLD
HHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PRIRYD
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]