Click here to switch to the map view.

The map label for this gene is dppC [H]

Identifier: 188587349

GI number: 188587349

Start: 2976085

End: 2976996

Strand: Reverse

Name: dppC [H]

Synonym: Nther_2756

Alternate gene names: 188587349

Gene position: 2976996-2976085 (Counterclockwise)

Preceding gene: 188587350

Following gene: 188587348

Centisome position: 94.04

GC content: 38.49

Gene sequence:

>912_bases
ATGTCAAATCCACAAGAAGAGACTTTAAAAAAAATTGACAAATTGAAAACGGAAAATACCAAAACTAAAAATAAAAGTTT
TAAATCAGATGCCATTAGAAGATTTAAACAAAGTCCCACTGGTATAATAGGATTGATAATTATAGCCTTATTTCTGTTTA
TAGCTGTGTTCGGGCCCTATATCACACCCCATGATCCCTTTGACCAGGATATATCTAAATCCCATGATCCGCCCAGTTTA
GAACATCCAATGGGCAATGACTTTTTGGGAAGGGATGTTTTTAGTAGAGTAATATATGGTTCTAGAATTTCTGTATTTGT
AGGAGTGACTGTGATACTAATAAGAATGTTAATTGGTATACCAATTGGCTTGATTTCTGGGTACTATGGCGGTATTGTTG
AATCAATCCTTATGAGAATTGTTGATGCAGTAATTGCCTTTCCTGGCATTATCCTTGCTTTAGCTATAATGGCTGCGAGA
GGGCAGGGTTTGGAAAATGTTATTTTAGCTCTATCAGTTACTGGTTGGACAACCTTTGCCAGATTGGTTCGAAGTGAAGT
ATTATCTTTGCGTGAACGAGAGTACATCCAAGCTGCCAGAGGTGTCGGGTTTCACGATATAAAGGTAATGGTCCGTCATA
TATTGCCTAACTGTATGGCCAGTATTATAGTATACTCCACTATGACTATAGCTGTAGTCATAATAGCCGAAGCAAGTTTG
AGTTTTTTAGGATTAGGTGCTGGTGCTGAACAGGTCACCTGGGGAATTCAAATGTCAATGGAACGTGAATACTTGCGGTA
CGCCTGGTGGGGAGTCACCTTTCCTGGATTAGCAATTGCGACTATAGTTTTAGGGTTTAATTTACTAGGTGATGCTCTTA
GAGATGTGCTAGATCCCAGGCTAAAAGAATAA

Upstream 100 bases:

>100_bases
AGTAATATTCATAGTGATTAACTTGATAACTGATATCTGCTACGGATTTTTAGATCCAAGGATAAGATATGACTAAATGT
GATAAGGGGGGACAGGTTTT

Downstream 100 bases:

>100_bases
TGTCCACAGGTGCAACTTTAGGCAGAAGAATTCGAGTTCAATAATTTAAGAAACATTTATGAGGGGTGATTCCGTGAACT
CCACTTTGCTGGAATTAAAA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MSNPQEETLKKIDKLKTENTKTKNKSFKSDAIRRFKQSPTGIIGLIIIALFLFIAVFGPYITPHDPFDQDISKSHDPPSL
EHPMGNDFLGRDVFSRVIYGSRISVFVGVTVILIRMLIGIPIGLISGYYGGIVESILMRIVDAVIAFPGIILALAIMAAR
GQGLENVILALSVTGWTTFARLVRSEVLSLREREYIQAARGVGFHDIKVMVRHILPNCMASIIVYSTMTIAVVIIAEASL
SFLGLGAGAEQVTWGIQMSMEREYLRYAWWGVTFPGLAIATIVLGFNLLGDALRDVLDPRLKE

Sequences:

>Translated_303_residues
MSNPQEETLKKIDKLKTENTKTKNKSFKSDAIRRFKQSPTGIIGLIIIALFLFIAVFGPYITPHDPFDQDISKSHDPPSL
EHPMGNDFLGRDVFSRVIYGSRISVFVGVTVILIRMLIGIPIGLISGYYGGIVESILMRIVDAVIAFPGIILALAIMAAR
GQGLENVILALSVTGWTTFARLVRSEVLSLREREYIQAARGVGFHDIKVMVRHILPNCMASIIVYSTMTIAVVIIAEASL
SFLGLGAGAEQVTWGIQMSMEREYLRYAWWGVTFPGLAIATIVLGFNLLGDALRDVLDPRLKE
>Mature_302_residues
SNPQEETLKKIDKLKTENTKTKNKSFKSDAIRRFKQSPTGIIGLIIIALFLFIAVFGPYITPHDPFDQDISKSHDPPSLE
HPMGNDFLGRDVFSRVIYGSRISVFVGVTVILIRMLIGIPIGLISGYYGGIVESILMRIVDAVIAFPGIILALAIMAARG
QGLENVILALSVTGWTTFARLVRSEVLSLREREYIQAARGVGFHDIKVMVRHILPNCMASIIVYSTMTIAVVIIAEASLS
FLGLGAGAEQVTWGIQMSMEREYLRYAWWGVTFPGLAIATIVLGFNLLGDALRDVLDPRLKE

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=301, Percent_Identity=41.1960132890365, Blast_Score=228, Evalue=5e-61,
Organism=Escherichia coli, GI1787760, Length=266, Percent_Identity=37.9699248120301, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1789964, Length=275, Percent_Identity=40.7272727272727, Blast_Score=184, Evalue=5e-48,
Organism=Escherichia coli, GI1789889, Length=242, Percent_Identity=37.603305785124, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1787498, Length=302, Percent_Identity=31.7880794701987, Blast_Score=154, Evalue=6e-39,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=30.9734513274336, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1787549, Length=270, Percent_Identity=30, Blast_Score=116, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33439; Mature: 33308

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPQEETLKKIDKLKTENTKTKNKSFKSDAIRRFKQSPTGIIGLIIIALFLFIAVFGPY
CCCCHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
ITPHDPFDQDISKSHDPPSLEHPMGNDFLGRDVFSRVIYGSRISVFVGVTVILIRMLIGI
CCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
PIGLISGYYGGIVESILMRIVDAVIAFPGIILALAIMAARGQGLENVILALSVTGWTTFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
RLVRSEVLSLREREYIQAARGVGFHDIKVMVRHILPNCMASIIVYSTMTIAVVIIAEASL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFLGLGAGAEQVTWGIQMSMEREYLRYAWWGVTFPGLAIATIVLGFNLLGDALRDVLDPR
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
LKE
CCC
>Mature Secondary Structure 
SNPQEETLKKIDKLKTENTKTKNKSFKSDAIRRFKQSPTGIIGLIIIALFLFIAVFGPY
CCCHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC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CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]