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The map label for this gene is rbsD

Identifier: 188587286

GI number: 188587286

Start: 2899003

End: 2899410

Strand: Reverse

Name: rbsD

Synonym: Nther_2688

Alternate gene names: 188587286

Gene position: 2899410-2899003 (Counterclockwise)

Preceding gene: 188587287

Following gene: 188587285

Centisome position: 91.59

GC content: 38.97

Gene sequence:

>408_bases
ATGAAAAAAACAACTTTGCTGAATAGCGAAATTTCCCGAGTTACTTCTCAAATGGGCCATACTGACGGATTGACTATTTC
CGATGCTGGACCTCCCATCCCCCAAGAATCAGAACGGATAGACCTGGCCCTTAAGGAAGGGGTACCAGCTTTTATGGAAA
CACTAGAAACGGTACTTTCCGAGTTACAGGTTGAAGCAGTGGTACTGACTACTGAAACGAGAGAAGTGAGCCCACAAACT
TATCATAAAATTGTGGACTTATTAAAACAGTACAATCCTGATATTCAAATAACAGAAATTGACCATGAAAGCTTTAAAAA
AGAGGTTTCAAACACAAAAGCAGTTGTCAGAACCGGTGAATGTACACCTTTTTCTAATATTATTTTAAAATCCGGAGTGG
TGTTTTAA

Upstream 100 bases:

>100_bases
TTCAGCCGTAGCGGCTATCACAGTGACCAAAGAAGGAGCACAAAGCTCATTACCCTATTCTCATCAGGTAGATACCTTCC
TGAAGAAAGGGGAACTGTAA

Downstream 100 bases:

>100_bases
TGACATTACTAAAAATGAAGGGAATAACCAAAACTTTTCCAGGTGTTAGGGCCCTTGATGATGTTGACCTGGACCTTGAA
GCTGGAGAAGTCCTGGCCCT

Product: RbsD or FucU transport

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MKKTTLLNSEISRVTSQMGHTDGLTISDAGPPIPQESERIDLALKEGVPAFMETLETVLSELQVEAVVLTTETREVSPQT
YHKIVDLLKQYNPDIQITEIDHESFKKEVSNTKAVVRTGECTPFSNIILKSGVVF

Sequences:

>Translated_135_residues
MKKTTLLNSEISRVTSQMGHTDGLTISDAGPPIPQESERIDLALKEGVPAFMETLETVLSELQVEAVVLTTETREVSPQT
YHKIVDLLKQYNPDIQITEIDHESFKKEVSNTKAVVRTGECTPFSNIILKSGVVF
>Mature_135_residues
MKKTTLLNSEISRVTSQMGHTDGLTISDAGPPIPQESERIDLALKEGVPAFMETLETVLSELQVEAVVLTTETREVSPQT
YHKIVDLLKQYNPDIQITEIDHESFKKEVSNTKAVVRTGECTPFSNIILKSGVVF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=46.0431654676259, Blast_Score=136, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_NATTJ (B2A2D7)

Other databases:

- EMBL:   CP001034
- RefSeq:   YP_001918831.1
- ProteinModelPortal:   B2A2D7
- SMR:   B2A2D7
- GeneID:   6314369
- GenomeReviews:   CP001034_GR
- KEGG:   nth:Nther_2688
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14973; Mature: 14973

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 102-102

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTTLLNSEISRVTSQMGHTDGLTISDAGPPIPQESERIDLALKEGVPAFMETLETVLS
CCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
ELQVEAVVLTTETREVSPQTYHKIVDLLKQYNPDIQITEIDHESFKKEVSNTKAVVRTGE
HHHHEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCHHEEECCC
CTPFSNIILKSGVVF
CCCHHHHHHHCCCCC
>Mature Secondary Structure
MKKTTLLNSEISRVTSQMGHTDGLTISDAGPPIPQESERIDLALKEGVPAFMETLETVLS
CCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
ELQVEAVVLTTETREVSPQTYHKIVDLLKQYNPDIQITEIDHESFKKEVSNTKAVVRTGE
HHHHEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCHHEEECCC
CTPFSNIILKSGVVF
CCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA