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The map label for this gene is sigV [H]

Identifier: 188587203

GI number: 188587203

Start: 2798954

End: 2799490

Strand: Reverse

Name: sigV [H]

Synonym: Nther_2604

Alternate gene names: 188587203

Gene position: 2799490-2798954 (Counterclockwise)

Preceding gene: 188587205

Following gene: 188587202

Centisome position: 88.44

GC content: 34.26

Gene sequence:

>537_bases
ATGGAGCAGCTAGTTAAACAGGCAAAACAGGGTGACAAAAATAGTTTTACAGAGATTGTTCTTAAAATAAAAGATGAAGC
TTATAAAGTAGCTTACTGCTACCTACAAAATGAACAAGATAGTATGGATGCGGTGTGCAGCGCAGTAGAAAAAGCTCTAT
TAAATATTGAACAATTAAAGAAACCTCAATACTTCAAAACGTGGTTCATCAGGATAACAATTAATGAATCACAAAAAATC
CTTAGAAAAAATAATAAGGTCATTAATATGGATGAAGAAATGCAGGGAGCAGTTACAGAAACTCATACAGAAAAACAACT
CGATCGAGAAGACAATATTGATCTCAATAATTCACTTAAAGACTTACATCCTCAAGATAGGTTAATTATCCATCTGAAGT
ACTATATGGGTTATACTCTGGACGAAATTGCCGGCTTGGTGAACTTGCCAGAAGGCACAGTCAGGACACGCTTATATAAA
AACCTGAAAATACTTAGGAAAAAGCTTGAGATTAAGGAGGTGTATAATAGTGGTTAA

Upstream 100 bases:

>100_bases
AACATTAAACATCAATACAACCTTAATACAATCTTTTTTTTATAATTTACTAAAACTATTTGGCCTTTCCATGGATCTAA
CTAATGAAAGGAGGTTAGCA

Downstream 100 bases:

>100_bases
AGATTTCGAAGATGTTATCAAAAAGCAGATCAAAGAGGAACAAGATAAAGTGTCAGTCCCAGAAAACCTTGACAAGAAAA
TTATTGACACGGTTGAATCC

Product: RNA polymerase, sigma-24 subunit, ECF subfamily

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MEQLVKQAKQGDKNSFTEIVLKIKDEAYKVAYCYLQNEQDSMDAVCSAVEKALLNIEQLKKPQYFKTWFIRITINESQKI
LRKNNKVINMDEEMQGAVTETHTEKQLDREDNIDLNNSLKDLHPQDRLIIHLKYYMGYTLDEIAGLVNLPEGTVRTRLYK
NLKILRKKLEIKEVYNSG

Sequences:

>Translated_178_residues
MEQLVKQAKQGDKNSFTEIVLKIKDEAYKVAYCYLQNEQDSMDAVCSAVEKALLNIEQLKKPQYFKTWFIRITINESQKI
LRKNNKVINMDEEMQGAVTETHTEKQLDREDNIDLNNSLKDLHPQDRLIIHLKYYMGYTLDEIAGLVNLPEGTVRTRLYK
NLKILRKKLEIKEVYNSG
>Mature_178_residues
MEQLVKQAKQGDKNSFTEIVLKIKDEAYKVAYCYLQNEQDSMDAVCSAVEKALLNIEQLKKPQYFKTWFIRITINESQKI
LRKNNKVINMDEEMQGAVTETHTEKQLDREDNIDLNNSLKDLHPQDRLIIHLKYYMGYTLDEIAGLVNLPEGTVRTRLYK
NLKILRKKLEIKEVYNSG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Positively regulates the expression of proteins involved in stress responses against bacitracin, paraquat and tellurite

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20871; Mature: 20871

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQLVKQAKQGDKNSFTEIVLKIKDEAYKVAYCYLQNEQDSMDAVCSAVEKALLNIEQLK
CHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHC
KPQYFKTWFIRITINESQKILRKNNKVINMDEEMQGAVTETHTEKQLDREDNIDLNNSLK
CCCCEEEEEEEEEECCHHHHHHCCCCEECCCHHHHCCHHHHHHHHHCCCCCCCCCCCCHH
DLHPQDRLIIHLKYYMGYTLDEIAGLVNLPEGTVRTRLYKNLKILRKKLEIKEVYNSG
HCCCCCEEEEEEHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEQLVKQAKQGDKNSFTEIVLKIKDEAYKVAYCYLQNEQDSMDAVCSAVEKALLNIEQLK
CHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHC
KPQYFKTWFIRITINESQKILRKNNKVINMDEEMQGAVTETHTEKQLDREDNIDLNNSLK
CCCCEEEEEEEEEECCHHHHHHCCCCEECCCHHHHCCHHHHHHHHHCCCCCCCCCCCCHH
DLHPQDRLIIHLKYYMGYTLDEIAGLVNLPEGTVRTRLYKNLKILRKKLEIKEVYNSG
HCCCCCEEEEEEHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]