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The map label for this gene is rnfD [H]

Identifier: 188587193

GI number: 188587193

Start: 2784993

End: 2785985

Strand: Direct

Name: rnfD [H]

Synonym: Nther_2594

Alternate gene names: 188587193

Gene position: 2784993-2785985 (Clockwise)

Preceding gene: 188587192

Following gene: 188587204

Centisome position: 87.98

GC content: 40.89

Gene sequence:

>993_bases
TTGGCTGAACCTCGGCTTGTGGTAGACTCTTCGCCACACCTTAGAAGTAAAAAAACTGTTTCTGTTGCTATGTTTGATGT
GATGATCGCTTTAATACCCATAGTTTTGGTTTCGATATATTTCTATCAACAGCATGCCATATTTACCATAGCTGTCTGTA
TGATAACTGCAGTTTTAACAGAACTGATCGTACGTAAACTGACAAACCGCCAGCCCACTCTTAATGATGGAAGTGCCTTG
TTAACGGGATTATTCGTAGCACTTTTATTTTCTGGAACTGTTGCTGTTTGGACCGCAATCTTGGCAACTGTGCTAGCCAT
TGGCGTGGCCAAAGAATTTGTGGGAGGTTTAGGATGGAATTTATTTAATCCCGCAATTTTCGGTAGAAGTATGATTATTA
TCTTGTCACCGCTATTTCTATGGTTAAATGATTTGTTCGCAGATATATATGTAGATCTAGGACCAGTAGATGTAATGACT
CAAGCAACTCCCCTGGCAATGTTGCAAGGGGGTATGGAGATGCCTTCTTATTGGGAAATGCTTGTGGCGTTTCCAGGAGG
GGCATTGTCGGAAACTTCGCCTTTAGCGCTATTAATCGGTGGGATTTACCTACTTTATCGTGGGCACATAAATTGGAGAA
TTCCTGTATCGGTTATCGGTACAGTTGTAGTACTCTCACTAATCGCTGGTGCAGATCCTATGTACCAAGTGCTTAGTGGC
GGAATAATGATCGGAGCATTCTTCATGGCTACCGACTGGGTGACTAGTCCCATTAACAACAAGGGAAAAATTATATTTGG
AATTGCCATCGGTGCATTAACGATTCTATTTAGATTAGGACTTGGAGCTACAGAAGGTGTCGCATTTTCCATTTTAATCA
TGAACGCCTTTGTGCCATTAATTGATAAGAAAACTAAACATCCATCCTTTAGTGAACCAGAACCTATAAAACAAACCACT
AAAGAACACGGAAAAACAGTAGCTGAATCCTAA

Upstream 100 bases:

>100_bases
AGGCCCATTGTCCAATTTATTAAGCAAGTGAAACCAGTTATCAAAAAAATGCAGAGAAGTAGATAATTGAAAATATTGCA
TACGAAAGGGGGAAATGATT

Downstream 100 bases:

>100_bases
ATATATATTTTCCAATTTCTCATTTGATAAGGGGCTGCCCCAAAAGTGATAATTTTTGGGGTGCTGCCCTTTTTTTAAAT
ATTTTCTATTTGTTTATTTC

Product: electron transport complex, RnfABCDGE type, D subunit

Products: NA

Alternate protein names: Nitrogen fixation protein rnfD [H]

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MAEPRLVVDSSPHLRSKKTVSVAMFDVMIALIPIVLVSIYFYQQHAIFTIAVCMITAVLTELIVRKLTNRQPTLNDGSAL
LTGLFVALLFSGTVAVWTAILATVLAIGVAKEFVGGLGWNLFNPAIFGRSMIIILSPLFLWLNDLFADIYVDLGPVDVMT
QATPLAMLQGGMEMPSYWEMLVAFPGGALSETSPLALLIGGIYLLYRGHINWRIPVSVIGTVVVLSLIAGADPMYQVLSG
GIMIGAFFMATDWVTSPINNKGKIIFGIAIGALTILFRLGLGATEGVAFSILIMNAFVPLIDKKTKHPSFSEPEPIKQTT
KEHGKTVAES

Sequences:

>Translated_330_residues
MAEPRLVVDSSPHLRSKKTVSVAMFDVMIALIPIVLVSIYFYQQHAIFTIAVCMITAVLTELIVRKLTNRQPTLNDGSAL
LTGLFVALLFSGTVAVWTAILATVLAIGVAKEFVGGLGWNLFNPAIFGRSMIIILSPLFLWLNDLFADIYVDLGPVDVMT
QATPLAMLQGGMEMPSYWEMLVAFPGGALSETSPLALLIGGIYLLYRGHINWRIPVSVIGTVVVLSLIAGADPMYQVLSG
GIMIGAFFMATDWVTSPINNKGKIIFGIAIGALTILFRLGLGATEGVAFSILIMNAFVPLIDKKTKHPSFSEPEPIKQTT
KEHGKTVAES
>Mature_329_residues
AEPRLVVDSSPHLRSKKTVSVAMFDVMIALIPIVLVSIYFYQQHAIFTIAVCMITAVLTELIVRKLTNRQPTLNDGSALL
TGLFVALLFSGTVAVWTAILATVLAIGVAKEFVGGLGWNLFNPAIFGRSMIIILSPLFLWLNDLFADIYVDLGPVDVMTQ
ATPLAMLQGGMEMPSYWEMLVAFPGGALSETSPLALLIGGIYLLYRGHINWRIPVSVIGTVVVLSLIAGADPMYQVLSGG
IMIGAFFMATDWVTSPINNKGKIIFGIAIGALTILFRLGLGATEGVAFSILIMNAFVPLIDKKTKHPSFSEPEPIKQTTK
EHGKTVAES

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=340, Percent_Identity=32.6470588235294, Blast_Score=153, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 35627; Mature: 35496

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEPRLVVDSSPHLRSKKTVSVAMFDVMIALIPIVLVSIYFYQQHAIFTIAVCMITAVLT
CCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELIVRKLTNRQPTLNDGSALLTGLFVALLFSGTVAVWTAILATVLAIGVAKEFVGGLGWN
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LFNPAIFGRSMIIILSPLFLWLNDLFADIYVDLGPVDVMTQATPLAMLQGGMEMPSYWEM
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHCCCCCCHHHHH
LVAFPGGALSETSPLALLIGGIYLLYRGHINWRIPVSVIGTVVVLSLIAGADPMYQVLSG
HHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHC
GIMIGAFFMATDWVTSPINNKGKIIFGIAIGALTILFRLGLGATEGVAFSILIMNAFVPL
CHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
IDKKTKHPSFSEPEPIKQTTKEHGKTVAES
HCCCCCCCCCCCCCHHHHHHHHHCCHHCCC
>Mature Secondary Structure 
AEPRLVVDSSPHLRSKKTVSVAMFDVMIALIPIVLVSIYFYQQHAIFTIAVCMITAVLT
CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELIVRKLTNRQPTLNDGSALLTGLFVALLFSGTVAVWTAILATVLAIGVAKEFVGGLGWN
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LFNPAIFGRSMIIILSPLFLWLNDLFADIYVDLGPVDVMTQATPLAMLQGGMEMPSYWEM
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHCCCCCCHHHHH
LVAFPGGALSETSPLALLIGGIYLLYRGHINWRIPVSVIGTVVVLSLIAGADPMYQVLSG
HHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHC
GIMIGAFFMATDWVTSPINNKGKIIFGIAIGALTILFRLGLGATEGVAFSILIMNAFVPL
CHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
IDKKTKHPSFSEPEPIKQTTKEHGKTVAES
HCCCCCCCCCCCCCHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA