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The map label for this gene is rnfC [H]

Identifier: 188587192

GI number: 188587192

Start: 2783636

End: 2784958

Strand: Direct

Name: rnfC [H]

Synonym: Nther_2593

Alternate gene names: 188587192

Gene position: 2783636-2784958 (Clockwise)

Preceding gene: 188587191

Following gene: 188587193

Centisome position: 87.94

GC content: 40.82

Gene sequence:

>1323_bases
ATGAATGTAAAATCCATAATTGGCGGAGCCTACCTTCCCCATTGTAAAGAATACACTGAAGAGCACAACATAAAAGACAT
CTCACTTCCAAAAGAAGTAGTAGTACCCCTCATTCAACACGTAGGTGCTCCCTGTAAACCTTTAGTGAGCGTAGGAGACA
AAGTAACCATGGGACAAAAGATAGGTGATAGTGAAGAATACATTAGTGCCCCCGTCCACGCCAGTGTAAATGGCACTGTC
AAGGCCATAGAAAAACGTCCCGGTGTGGAAGGATATGATGAAGACAGTATAGTGATATCCACTGATTTCGATAAAGAAGA
ACCTGAGTTTTACACTAAGAATGATCCCGATAAATTATCAGACGAAGAATTAAAAGAACTGCTAAAAGATTCAGGCATAG
CTGGTATGGGAGGAGCTGCTTTCCCAACCTATGTTAATGTAAATCAGTCACAGCCCATTGAATATCTGCTTTTAAATGGG
GCTGAATGTGAACCCTACTTAACTTGTGATCATCGTCAAATGATTGAAATGCCTGAAAAACTAATCAAAGGTGCAGAGAT
ACTAATGCGCATCATAGGTGCTAAAAAATGTTATATCGGAATAGAAACTAATAAACCCGATGCCATAGAAGTTCTATCTG
AACAAACTAAAGAATTAGAAAATATGGAAGTGGTCCCCCTAGCCTCCAAGTATCCACAGGGCTACAAATCTCATTTAATA
AATGCTATTACTGACCGCAAAGTACCTCGAGGGGCTAGATCAGCGGAACTCGGATGCATTGTTAGAAATGTAGGCACTAC
AATCGCTGTGTACGAAGCTGTGGTGTACGAAAAGCCACTAATTGAGCGAGTAGTAACTGTATCGGGGCCAAAAATACCTC
AACCGGGCAATTTTTCAATTCGCATCGGCACCCCAATATCTCATATCCTAGAACAGTGTGAAATTGAAGACATAAGCACT
TTGGAAGGATGTAAAGTTATTTTAGGGGGACCCATGACGGGAATGAGCCAGTACTCTGTTCAAGCGCCCATTGTCAAAAA
TAGCACTGGCTTATTGGTTTTTCCGCCGGAAATGTTACCGGAATGGGATTATCACAATTGTGTGAAATGCGGTGATTGTG
TAGCTCATTGCCCTATGTATCTGTATCCCAATAAATTGAGTATTTTTGCAGAGGCCGAAATGTACCGAGAAGCAGAAGAT
TGGGATATTATGGACTGTATTGAATGCGGATTATGTGTGTATCAATGTCCGTCTAACAGGCCCATTGTCCAATTTATTAA
GCAAGTGAAACCAGTTATCAAAAAAATGCAGAGAAGTAGATAA

Upstream 100 bases:

>100_bases
TAGGGGTTCTAGCAAATAAATCAGAATATAACAAAGTAAATAGAGCTAAACAGCAAAAAGAAAAGCGCAATTCTGACAAA
GAAGATCAGGGGGTGACAAA

Downstream 100 bases:

>100_bases
TTGAAAATATTGCATACGAAAGGGGGAAATGATTTTGGCTGAACCTCGGCTTGTGGTAGACTCTTCGCCACACCTTAGAA
GTAAAAAAACTGTTTCTGTT

Product: electron transport complex, RnfABCDGE type, C subunit

Products: NA

Alternate protein names: Nitrogen fixation protein rnfC [H]

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MNVKSIIGGAYLPHCKEYTEEHNIKDISLPKEVVVPLIQHVGAPCKPLVSVGDKVTMGQKIGDSEEYISAPVHASVNGTV
KAIEKRPGVEGYDEDSIVISTDFDKEEPEFYTKNDPDKLSDEELKELLKDSGIAGMGGAAFPTYVNVNQSQPIEYLLLNG
AECEPYLTCDHRQMIEMPEKLIKGAEILMRIIGAKKCYIGIETNKPDAIEVLSEQTKELENMEVVPLASKYPQGYKSHLI
NAITDRKVPRGARSAELGCIVRNVGTTIAVYEAVVYEKPLIERVVTVSGPKIPQPGNFSIRIGTPISHILEQCEIEDIST
LEGCKVILGGPMTGMSQYSVQAPIVKNSTGLLVFPPEMLPEWDYHNCVKCGDCVAHCPMYLYPNKLSIFAEAEMYREAED
WDIMDCIECGLCVYQCPSNRPIVQFIKQVKPVIKKMQRSR

Sequences:

>Translated_440_residues
MNVKSIIGGAYLPHCKEYTEEHNIKDISLPKEVVVPLIQHVGAPCKPLVSVGDKVTMGQKIGDSEEYISAPVHASVNGTV
KAIEKRPGVEGYDEDSIVISTDFDKEEPEFYTKNDPDKLSDEELKELLKDSGIAGMGGAAFPTYVNVNQSQPIEYLLLNG
AECEPYLTCDHRQMIEMPEKLIKGAEILMRIIGAKKCYIGIETNKPDAIEVLSEQTKELENMEVVPLASKYPQGYKSHLI
NAITDRKVPRGARSAELGCIVRNVGTTIAVYEAVVYEKPLIERVVTVSGPKIPQPGNFSIRIGTPISHILEQCEIEDIST
LEGCKVILGGPMTGMSQYSVQAPIVKNSTGLLVFPPEMLPEWDYHNCVKCGDCVAHCPMYLYPNKLSIFAEAEMYREAED
WDIMDCIECGLCVYQCPSNRPIVQFIKQVKPVIKKMQRSR
>Mature_440_residues
MNVKSIIGGAYLPHCKEYTEEHNIKDISLPKEVVVPLIQHVGAPCKPLVSVGDKVTMGQKIGDSEEYISAPVHASVNGTV
KAIEKRPGVEGYDEDSIVISTDFDKEEPEFYTKNDPDKLSDEELKELLKDSGIAGMGGAAFPTYVNVNQSQPIEYLLLNG
AECEPYLTCDHRQMIEMPEKLIKGAEILMRIIGAKKCYIGIETNKPDAIEVLSEQTKELENMEVVPLASKYPQGYKSHLI
NAITDRKVPRGARSAELGCIVRNVGTTIAVYEAVVYEKPLIERVVTVSGPKIPQPGNFSIRIGTPISHILEQCEIEDIST
LEGCKVILGGPMTGMSQYSVQAPIVKNSTGLLVFPPEMLPEWDYHNCVKCGDCVAHCPMYLYPNKLSIFAEAEMYREAED
WDIMDCIECGLCVYQCPSNRPIVQFIKQVKPVIKKMQRSR

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=438, Percent_Identity=36.0730593607306, Blast_Score=265, Evalue=5e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538 [H]

Pfam domain/function: PF01512 Complex1_51K [H]

EC number: NA

Molecular weight: Translated: 48858; Mature: 48858

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVKSIIGGAYLPHCKEYTEEHNIKDISLPKEVVVPLIQHVGAPCKPLVSVGDKVTMGQK
CCCHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCEECCCC
IGDSEEYISAPVHASVNGTVKAIEKRPGVEGYDEDSIVISTDFDKEEPEFYTKNDPDKLS
CCCCHHHHCCCCEECCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
DEELKELLKDSGIAGMGGAAFPTYVNVNQSQPIEYLLLNGAECEPYLTCDHRQMIEMPEK
HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCEEECCHHHHHHHHHH
LIKGAEILMRIIGAKKCYIGIETNKPDAIEVLSEQTKELENMEVVPLASKYPQGYKSHLI
HHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCEEEECHHHCCCCHHHHHH
NAITDRKVPRGARSAELGCIVRNVGTTIAVYEAVVYEKPLIERVVTVSGPKIPQPGNFSI
HHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEE
RIGTPISHILEQCEIEDISTLEGCKVILGGPMTGMSQYSVQAPIVKNSTGLLVFPPEMLP
EECCCHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEEECCEEECCCCEEEECHHHCC
EWDYHNCVKCGDCVAHCPMYLYPNKLSIFAEAEMYREAEDWDIMDCIECGLCVYQCPSNR
CCCCCCHHHHHHHHHHCCCEEECCCEEEEEHHHHHHCCCCCCHHHHHHHCCEEEECCCCC
PIVQFIKQVKPVIKKMQRSR
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNVKSIIGGAYLPHCKEYTEEHNIKDISLPKEVVVPLIQHVGAPCKPLVSVGDKVTMGQK
CCCHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCEECCCC
IGDSEEYISAPVHASVNGTVKAIEKRPGVEGYDEDSIVISTDFDKEEPEFYTKNDPDKLS
CCCCHHHHCCCCEECCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
DEELKELLKDSGIAGMGGAAFPTYVNVNQSQPIEYLLLNGAECEPYLTCDHRQMIEMPEK
HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCEEECCHHHHHHHHHH
LIKGAEILMRIIGAKKCYIGIETNKPDAIEVLSEQTKELENMEVVPLASKYPQGYKSHLI
HHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCEEEECHHHCCCCHHHHHH
NAITDRKVPRGARSAELGCIVRNVGTTIAVYEAVVYEKPLIERVVTVSGPKIPQPGNFSI
HHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEE
RIGTPISHILEQCEIEDISTLEGCKVILGGPMTGMSQYSVQAPIVKNSTGLLVFPPEMLP
EECCCHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEEECCEEECCCCEEEECHHHCC
EWDYHNCVKCGDCVAHCPMYLYPNKLSIFAEAEMYREAEDWDIMDCIECGLCVYQCPSNR
CCCCCCHHHHHHHHHHCCCEEECCCEEEEEHHHHHHCCCCCCHHHHHHHCCEEEECCCCC
PIVQFIKQVKPVIKKMQRSR
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA