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The map label for this gene is ydeM [C]

Identifier: 188587046

GI number: 188587046

Start: 2613557

End: 2614900

Strand: Reverse

Name: ydeM [C]

Synonym: Nther_2438

Alternate gene names: 188587046

Gene position: 2614900-2613557 (Counterclockwise)

Preceding gene: 188587047

Following gene: 188587045

Centisome position: 82.6

GC content: 32.07

Gene sequence:

>1344_bases
GTGCAGGCTTCTAAATATAATTTTTTCTTTGATTCACCGGATAACACTGATGAACTGATTGCCTATAATGCCAGGACGAA
TGCCTTGGCAATTATGGACACAAAAGAATATGAAAAATATAAAAATTACGTAGAAAACGGTTTACAGATTGACGACACAG
AATTATATAAAACATTAGAAGAGAACGGATTCATACTCGAAAATGCTCTTAATGAGATTGACTTAATCCGTTATTCATTA
TTAAAACATAGATATTCAACAAAAAGATTTGGATTTACTTTGGTACCTACATTAGAGTGTGATTTTGAATGCATTTATTG
TTACGAACAGGGAGTTCAGCACGGGTATATGTCTGAAGACATTCAACAATCTATTATAAATTATATAAAACAAAAATTAG
ACCATATCCGCGACTTATCTATTGGATGGCATGGAGGGGAACCACTCTTAGCATTAGATGTAATAGAAAATATTAACAAG
CAAGCTATAGAACTTTGTAATGAAAAAGGAAAAAAATTTAGCAGTTCTCTGATAACTAATGGTTATAATTTAAATAGAGA
AACTGTGGATAAATTAAACCAACTAAATATCAGTTCTATACAAATTACACTGGATGGTCCGAAAGATATTCATGATAAAC
GGAGACCTGCTAGAGGTGGACAACCTACATTTTCCAAAATAGTTCAAAACTTGTGTGATTGTAAAGACATTCTACCAAAT
GTTTCTGTAAGAGTTAATGTAGATAAAGAAAATGTTGAAAGAATTCAAGAAGTGTTAACTGTATTAAAATCTCATAGTTT
AGAAAATACTGTATCAGTTTATCCAGGTTATGTGGAGCCGACAAACGACTGTTATGACGTGGATAACATTTTGGATTCCC
GCTATTTTGCCAAAATTGAATATGAATTTTACAAAAAACTAGTGGAATTTGGTTTTGCTCCCAATATAAGGCACAGATAT
CCCAGACGAAGATCAAATGTGTGTTGTGCAGATAACGATAGTGCAATAGTAGTTGATCCTGAAGGAGATGTTTATAAGTG
CTGGAACGATGTTGGTAGAAAAGAGTATAAAATAGCACATGTTACTGAAGAAGATCCTGCAACAGTGCAAACACTTTTTA
GATATATGATGTATGATCCTACAGAAGATACAGAATGTGTAGAGTGTAAATTTCTTCCCTTGTGCATGGGAGGTTGTCCA
AGAAGAAGAATTGATGGAATAACAGATAGATGTATTTCTTATAAGTATGAACTCTCTAATTACATTAAAGAAATTGCTAT
TGATATGTATAATCAGAAAGTAAAATCACAACAAGAGGAAAAAGTTAAAAAAGCTAAAATTTGA

Upstream 100 bases:

>100_bases
GGTATCCTCTTTTCAATGAAATTATCGTTATGTCAATCAAAGTAGAGGATACCCTACTTTTTCTTTTAATTAAAAATCTA
TGTCAAAGGAGGTTTTGAAT

Downstream 100 bases:

>100_bases
TTTACCATGTAATTAACCTAGGTTTAGCAGGTATTACTTTTAAAGTGTATACTTGCTAAATCTAGGTCTATCATTCTTTA
ATAAAGTCAAAATATAATTA

Product: Radical SAM domain protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Arylsulfatase Regulator; Radical SAM Family Protein; Heme Biosynthesis Family Protein; Transcriptional Regulator; AstB/ChuR-Related Protein; Regulatory Protein; Heme Biosynthesis; Arylsulfatase Regulator Fe-S Oxidoreductase; Transcriptional Regulatory Protein; Radical Sam Domain Protein; Heme Biosynthesis Related Protein; Arylsulfatase Regulatory Protein; Radical Sam Family Protein; Fe-S Oxidoreductases; Arylsulfatase-Activating AtsB; Six-Cys-In-45 Radical SAM Protein; Radical Sam Protein; Fe-S Oxidoreductase; Arylsulfatase Regulator AslB

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MQASKYNFFFDSPDNTDELIAYNARTNALAIMDTKEYEKYKNYVENGLQIDDTELYKTLEENGFILENALNEIDLIRYSL
LKHRYSTKRFGFTLVPTLECDFECIYCYEQGVQHGYMSEDIQQSIINYIKQKLDHIRDLSIGWHGGEPLLALDVIENINK
QAIELCNEKGKKFSSSLITNGYNLNRETVDKLNQLNISSIQITLDGPKDIHDKRRPARGGQPTFSKIVQNLCDCKDILPN
VSVRVNVDKENVERIQEVLTVLKSHSLENTVSVYPGYVEPTNDCYDVDNILDSRYFAKIEYEFYKKLVEFGFAPNIRHRY
PRRRSNVCCADNDSAIVVDPEGDVYKCWNDVGRKEYKIAHVTEEDPATVQTLFRYMMYDPTEDTECVECKFLPLCMGGCP
RRRIDGITDRCISYKYELSNYIKEIAIDMYNQKVKSQQEEKVKKAKI

Sequences:

>Translated_447_residues
MQASKYNFFFDSPDNTDELIAYNARTNALAIMDTKEYEKYKNYVENGLQIDDTELYKTLEENGFILENALNEIDLIRYSL
LKHRYSTKRFGFTLVPTLECDFECIYCYEQGVQHGYMSEDIQQSIINYIKQKLDHIRDLSIGWHGGEPLLALDVIENINK
QAIELCNEKGKKFSSSLITNGYNLNRETVDKLNQLNISSIQITLDGPKDIHDKRRPARGGQPTFSKIVQNLCDCKDILPN
VSVRVNVDKENVERIQEVLTVLKSHSLENTVSVYPGYVEPTNDCYDVDNILDSRYFAKIEYEFYKKLVEFGFAPNIRHRY
PRRRSNVCCADNDSAIVVDPEGDVYKCWNDVGRKEYKIAHVTEEDPATVQTLFRYMMYDPTEDTECVECKFLPLCMGGCP
RRRIDGITDRCISYKYELSNYIKEIAIDMYNQKVKSQQEEKVKKAKI
>Mature_447_residues
MQASKYNFFFDSPDNTDELIAYNARTNALAIMDTKEYEKYKNYVENGLQIDDTELYKTLEENGFILENALNEIDLIRYSL
LKHRYSTKRFGFTLVPTLECDFECIYCYEQGVQHGYMSEDIQQSIINYIKQKLDHIRDLSIGWHGGEPLLALDVIENINK
QAIELCNEKGKKFSSSLITNGYNLNRETVDKLNQLNISSIQITLDGPKDIHDKRRPARGGQPTFSKIVQNLCDCKDILPN
VSVRVNVDKENVERIQEVLTVLKSHSLENTVSVYPGYVEPTNDCYDVDNILDSRYFAKIEYEFYKKLVEFGFAPNIRHRY
PRRRSNVCCADNDSAIVVDPEGDVYKCWNDVGRKEYKIAHVTEEDPATVQTLFRYMMYDPTEDTECVECKFLPLCMGGCP
RRRIDGITDRCISYKYELSNYIKEIAIDMYNQKVKSQQEEKVKKAKI

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51940; Mature: 51940

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQASKYNFFFDSPDNTDELIAYNARTNALAIMDTKEYEKYKNYVENGLQIDDTELYKTLE
CCCCCCCEEECCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHH
ENGFILENALNEIDLIRYSLLKHRYSTKRFGFTLVPTLECDFECIYCYEQGVQHGYMSED
HCCEEHHHHHHHHHHHHHHHHHHHHCHHHCCEEEEEEECCCCEEEHEEHHCCCCCCCHHH
IQQSIINYIKQKLDHIRDLSIGWHGGEPLLALDVIENINKQAIELCNEKGKKFSSSLITN
HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHCCHHHHHHHHHHCHHHHHHHHHC
GYNLNRETVDKLNQLNISSIQITLDGPKDIHDKRRPARGGQPTFSKIVQNLCDCKDILPN
CCCCCHHHHHHHHCCCCEEEEEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
VSVRVNVDKENVERIQEVLTVLKSHSLENTVSVYPGYVEPTNDCYDVDNILDSRYFAKIE
CEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHHCCHHHEEEE
YEFYKKLVEFGFAPNIRHRYPRRRSNVCCADNDSAIVVDPEGDVYKCWNDVGRKEYKIAH
HHHHHHHHHHCCCCCHHHHCCCHHCCEEEECCCCEEEECCCCCHHHHHHHCCCCEEEEEE
VTEEDPATVQTLFRYMMYDPTEDTECVECKFLPLCMGGCPRRRIDGITDRCISYKYELSN
ECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHHCCCCCHHHHCCHHHHHHHHHHHHHH
YIKEIAIDMYNQKVKSQQEEKVKKAKI
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQASKYNFFFDSPDNTDELIAYNARTNALAIMDTKEYEKYKNYVENGLQIDDTELYKTLE
CCCCCCCEEECCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHH
ENGFILENALNEIDLIRYSLLKHRYSTKRFGFTLVPTLECDFECIYCYEQGVQHGYMSED
HCCEEHHHHHHHHHHHHHHHHHHHHCHHHCCEEEEEEECCCCEEEHEEHHCCCCCCCHHH
IQQSIINYIKQKLDHIRDLSIGWHGGEPLLALDVIENINKQAIELCNEKGKKFSSSLITN
HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHCCHHHHHHHHHHCHHHHHHHHHC
GYNLNRETVDKLNQLNISSIQITLDGPKDIHDKRRPARGGQPTFSKIVQNLCDCKDILPN
CCCCCHHHHHHHHCCCCEEEEEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
VSVRVNVDKENVERIQEVLTVLKSHSLENTVSVYPGYVEPTNDCYDVDNILDSRYFAKIE
CEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHHCCHHHEEEE
YEFYKKLVEFGFAPNIRHRYPRRRSNVCCADNDSAIVVDPEGDVYKCWNDVGRKEYKIAH
HHHHHHHHHHCCCCCHHHHCCCHHCCEEEECCCCEEEECCCCCHHHHHHHCCCCEEEEEE
VTEEDPATVQTLFRYMMYDPTEDTECVECKFLPLCMGGCPRRRIDGITDRCISYKYELSN
ECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHHCCCCCHHHHCCHHHHHHHHHHHHHH
YIKEIAIDMYNQKVKSQQEEKVKKAKI
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA