| Definition | Natranaerobius thermophilus JW/NM-WN-LF, complete genome. |
|---|---|
| Accession | NC_010718 |
| Length | 3,165,557 |
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The map label for this gene is oppD [H]
Identifier: 188586999
GI number: 188586999
Start: 2555114
End: 2556154
Strand: Direct
Name: oppD [H]
Synonym: Nther_2391
Alternate gene names: 188586999
Gene position: 2555114-2556154 (Clockwise)
Preceding gene: 188586998
Following gene: 188587000
Centisome position: 80.72
GC content: 42.07
Gene sequence:
>1041_bases ATGGCACTATTAGAAATTGAAAATCTGACCATCAGTTACCAGCTTAAAAATGGTGAATTACGTGCCGTCGATGACGTTTC ATTTAATATTCCCGAGGGAAGTAACTTGGGTCTAGTCGGTGAAAGCGGTTGTGGTAAAACTACCGCAGCCAAGTCTATAG TCAATCTCCTTCCGGAAAACGGGCGAATTGCCCAAGGAAAAATTAAATATAAGGGGACGGATCTAGCTCAATTAAATGAA AATGAAATTCGTAAATGGCGCTGGCAAGAAATCTCTCTGATTACCCAGAGTGCCATGAATGCCCTAAACCCGGTTTATCG TGTGGGAGATCAAATCGTAGAAGCTATTAGAGCCCATGAAAATATCAGTAAGAAAAATGCCAAGAACAGAGCAGCAGAGC TCTTCGATATAGTAGGTCTAGAAAAGAAAAGGTTAGAAGCTTATCCCCATGAAATGAGTGGCGGAATGCGCCAACGCGCA ATTATAGCCATGGCTCTAGCCTTGGATCCAGGTCTGATACTAGCCGACGAGCCTACAACTGCCTTGGACGTGGTAGTTCA AGATAAAATTCTCGCCAAAATAATCGAAATTCAAGCAGAGCTTAAGAGTTCTATGGTTTTTATAACCCACGATATATCTG TAGTTGCCGAAACCTGTGATTATGTATGTGTCATGTATGCAGGTAAAGTTATGGAATACGGGCCTACCAGAACTATTTTC AAAGATTCTCGTCATCCATATACCATGGGTTTAAGAAATGCATTTCCCAGTGTTAATTTGTCTCAGATGGAACTGATTTC AATACCAGGTTATCCACCTGATCTGATGGATCCACCTACTGGCTGTAGATTTGCAGAGCGTTGCCCCTTTATGGAAAATA TTTGTTTAGAACAGGACCCGGGAATCACAGCCATCACAGATGACCATTATCTCAGCTGTCACTTCCCCGAAAAATATCAA CAGTTCCGAGATATAGCAAAGCACCGCAGTACCTGGGAAAAAGTTAAAGAGAGGATGATAGAAGGTGAGGTGGTATATTG A
Upstream 100 bases:
>100_bases CCACCAGGATTAGCTATTGCCATAGTAGTAGTATCGGTATTCTTTAGTTCCAGAGCCCTGGAATTTGTAGCTAATCCTCA ATTAAGGAGGCGATAGTTAG
Downstream 100 bases:
>100_bases TGAAACAAGAAGCCAAAACTGATATCAACCAATCAACTGCTGGTAGCAATGAAATACCAGCTATAGAGGTGAAAAATTTA AAAAAATATTTCCCCCTCCC
Product: oligopeptide/dipeptide ABC transporter, ATPase subunit
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 346; Mature: 345
Protein sequence:
>346_residues MALLEIENLTISYQLKNGELRAVDDVSFNIPEGSNLGLVGESGCGKTTAAKSIVNLLPENGRIAQGKIKYKGTDLAQLNE NEIRKWRWQEISLITQSAMNALNPVYRVGDQIVEAIRAHENISKKNAKNRAAELFDIVGLEKKRLEAYPHEMSGGMRQRA IIAMALALDPGLILADEPTTALDVVVQDKILAKIIEIQAELKSSMVFITHDISVVAETCDYVCVMYAGKVMEYGPTRTIF KDSRHPYTMGLRNAFPSVNLSQMELISIPGYPPDLMDPPTGCRFAERCPFMENICLEQDPGITAITDDHYLSCHFPEKYQ QFRDIAKHRSTWEKVKERMIEGEVVY
Sequences:
>Translated_346_residues MALLEIENLTISYQLKNGELRAVDDVSFNIPEGSNLGLVGESGCGKTTAAKSIVNLLPENGRIAQGKIKYKGTDLAQLNE NEIRKWRWQEISLITQSAMNALNPVYRVGDQIVEAIRAHENISKKNAKNRAAELFDIVGLEKKRLEAYPHEMSGGMRQRA IIAMALALDPGLILADEPTTALDVVVQDKILAKIIEIQAELKSSMVFITHDISVVAETCDYVCVMYAGKVMEYGPTRTIF KDSRHPYTMGLRNAFPSVNLSQMELISIPGYPPDLMDPPTGCRFAERCPFMENICLEQDPGITAITDDHYLSCHFPEKYQ QFRDIAKHRSTWEKVKERMIEGEVVY >Mature_345_residues ALLEIENLTISYQLKNGELRAVDDVSFNIPEGSNLGLVGESGCGKTTAAKSIVNLLPENGRIAQGKIKYKGTDLAQLNEN EIRKWRWQEISLITQSAMNALNPVYRVGDQIVEAIRAHENISKKNAKNRAAELFDIVGLEKKRLEAYPHEMSGGMRQRAI IAMALALDPGLILADEPTTALDVVVQDKILAKIIEIQAELKSSMVFITHDISVVAETCDYVCVMYAGKVMEYGPTRTIFK DSRHPYTMGLRNAFPSVNLSQMELISIPGYPPDLMDPPTGCRFAERCPFMENICLEQDPGITAITDDHYLSCHFPEKYQQ FRDIAKHRSTWEKVKERMIEGEVVY
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42490749, Length=242, Percent_Identity=26.4462809917355, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI148612844, Length=226, Percent_Identity=28.7610619469027, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI255708477, Length=226, Percent_Identity=28.7610619469027, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI9961252, Length=250, Percent_Identity=27.6, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4505771, Length=250, Percent_Identity=27.6, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI42741659, Length=229, Percent_Identity=26.2008733624454, Blast_Score=66, Evalue=6e-11, Organism=Homo sapiens, GI21536378, Length=223, Percent_Identity=27.3542600896861, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI9955968, Length=238, Percent_Identity=26.4705882352941, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI48994883, Length=317, Percent_Identity=42.9022082018927, Blast_Score=279, Evalue=2e-76, Organism=Escherichia coli, GI1789963, Length=318, Percent_Identity=40.251572327044, Blast_Score=270, Evalue=1e-73, Organism=Escherichia coli, GI1787759, Length=320, Percent_Identity=39.375, Blast_Score=239, Evalue=2e-64, Organism=Escherichia coli, GI145693107, Length=265, Percent_Identity=40.377358490566, Blast_Score=207, Evalue=9e-55, Organism=Escherichia coli, GI1789962, Length=307, Percent_Identity=37.4592833876222, Blast_Score=206, Evalue=2e-54, Organism=Escherichia coli, GI1787500, Length=324, Percent_Identity=35.8024691358025, Blast_Score=201, Evalue=5e-53, Organism=Escherichia coli, GI1788506, Length=258, Percent_Identity=41.0852713178295, Blast_Score=195, Evalue=3e-51, Organism=Escherichia coli, GI1787548, Length=326, Percent_Identity=33.4355828220859, Blast_Score=192, Evalue=2e-50, Organism=Escherichia coli, GI1787758, Length=279, Percent_Identity=32.258064516129, Blast_Score=150, Evalue=2e-37, Organism=Escherichia coli, GI1789891, Length=264, Percent_Identity=31.4393939393939, Blast_Score=133, Evalue=2e-32, Organism=Escherichia coli, GI48994997, Length=247, Percent_Identity=35.2226720647773, Blast_Score=132, Evalue=4e-32, Organism=Escherichia coli, GI1789890, Length=260, Percent_Identity=35.3846153846154, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI1786398, Length=244, Percent_Identity=33.6065573770492, Blast_Score=125, Evalue=4e-30, Organism=Escherichia coli, GI1787547, Length=253, Percent_Identity=28.4584980237154, Blast_Score=120, Evalue=2e-28, Organism=Escherichia coli, GI1789032, Length=248, Percent_Identity=31.8548387096774, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1788225, Length=257, Percent_Identity=33.0739299610895, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1788450, Length=223, Percent_Identity=32.2869955156951, Blast_Score=111, Evalue=6e-26, Organism=Escherichia coli, GI87081791, Length=260, Percent_Identity=32.3076923076923, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1788761, Length=230, Percent_Identity=31.304347826087, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI87081709, Length=258, Percent_Identity=27.906976744186, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787089, Length=221, Percent_Identity=32.579185520362, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI1787712, Length=248, Percent_Identity=27.8225806451613, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1786703, Length=239, Percent_Identity=28.0334728033473, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1790162, Length=243, Percent_Identity=26.3374485596708, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1790739, Length=242, Percent_Identity=31.404958677686, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787105, Length=215, Percent_Identity=30.6976744186047, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI87081834, Length=215, Percent_Identity=31.1627906976744, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787029, Length=242, Percent_Identity=29.3388429752066, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1788644, Length=184, Percent_Identity=29.3478260869565, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787370, Length=227, Percent_Identity=28.6343612334802, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1786803, Length=263, Percent_Identity=26.2357414448669, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1790467, Length=239, Percent_Identity=27.1966527196653, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1786563, Length=238, Percent_Identity=28.9915966386555, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI87082267, Length=263, Percent_Identity=23.9543726235741, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1786872, Length=249, Percent_Identity=28.1124497991968, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1789672, Length=247, Percent_Identity=27.9352226720648, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786345, Length=240, Percent_Identity=26.25, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1789593, Length=245, Percent_Identity=27.3469387755102, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1789586, Length=218, Percent_Identity=27.5229357798165, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1789873, Length=230, Percent_Identity=28.695652173913, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787143, Length=235, Percent_Identity=28.936170212766, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=27.7511961722488, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI48994943, Length=267, Percent_Identity=23.5955056179775, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1789751, Length=251, Percent_Identity=25.4980079681275, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1787112, Length=222, Percent_Identity=27.027027027027, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788053, Length=208, Percent_Identity=28.8461538461538, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1789991, Length=234, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1790525, Length=254, Percent_Identity=27.5590551181102, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1786319, Length=229, Percent_Identity=24.8908296943231, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193202349, Length=225, Percent_Identity=28.4444444444444, Blast_Score=81, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71992290, Length=251, Percent_Identity=28.2868525896414, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI25146777, Length=213, Percent_Identity=29.1079812206573, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17541710, Length=250, Percent_Identity=28.4, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71984940, Length=238, Percent_Identity=27.3109243697479, Blast_Score=72, Evalue=6e-13, Organism=Caenorhabditis elegans, GI193211015, Length=238, Percent_Identity=28.1512605042017, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI71996809, Length=238, Percent_Identity=28.1512605042017, Blast_Score=68, Evalue=8e-12, Organism=Caenorhabditis elegans, GI193211017, Length=238, Percent_Identity=28.1512605042017, Blast_Score=68, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17558664, Length=232, Percent_Identity=27.1551724137931, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193208177, Length=243, Percent_Identity=27.5720164609054, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17569143, Length=223, Percent_Identity=26.9058295964126, Blast_Score=65, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17569145, Length=224, Percent_Identity=27.2321428571429, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6322640, Length=247, Percent_Identity=29.9595141700405, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6323217, Length=219, Percent_Identity=28.310502283105, Blast_Score=70, Evalue=7e-13, Organism=Saccharomyces cerevisiae, GI6321752, Length=267, Percent_Identity=26.9662921348315, Blast_Score=67, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6322957, Length=265, Percent_Identity=25.2830188679245, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007328, Length=219, Percent_Identity=29.2237442922374, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI28574150, Length=219, Percent_Identity=29.2237442922374, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI85726357, Length=238, Percent_Identity=26.0504201680672, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21357907, Length=235, Percent_Identity=26.3829787234043, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 38840; Mature: 38709
Theoretical pI: Translated: 5.48; Mature: 5.48
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLEIENLTISYQLKNGELRAVDDVSFNIPEGSNLGLVGESGCGKTTAAKSIVNLLPEN CCEEEEECEEEEEEECCCCEEEECCCEEECCCCCCCEEEECCCCCCHHHHHHHHHHCCCC GRIAQGKIKYKGTDLAQLNENEIRKWRWQEISLITQSAMNALNPVYRVGDQIVEAIRAHE CCEECCEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NISKKNAKNRAAELFDIVGLEKKRLEAYPHEMSGGMRQRAIIAMALALDPGLILADEPTT HHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHCCCHHHHHHHHHHHHCCCCEEEECCCCH ALDVVVQDKILAKIIEIQAELKSSMVFITHDISVVAETCDYVCVMYAGKVMEYGPTRTIF HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHCHHHHCCCCCHHH KDSRHPYTMGLRNAFPSVNLSQMELISIPGYPPDLMDPPTGCRFAERCPFMENICLEQDP CCCCCCEEECHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHCCCCCC GITAITDDHYLSCHFPEKYQQFRDIAKHRSTWEKVKERMIEGEVVY CEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure ALLEIENLTISYQLKNGELRAVDDVSFNIPEGSNLGLVGESGCGKTTAAKSIVNLLPEN CEEEEECEEEEEEECCCCEEEECCCEEECCCCCCCEEEECCCCCCHHHHHHHHHHCCCC GRIAQGKIKYKGTDLAQLNENEIRKWRWQEISLITQSAMNALNPVYRVGDQIVEAIRAHE CCEECCEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NISKKNAKNRAAELFDIVGLEKKRLEAYPHEMSGGMRQRAIIAMALALDPGLILADEPTT HHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHCCCHHHHHHHHHHHHCCCCEEEECCCCH ALDVVVQDKILAKIIEIQAELKSSMVFITHDISVVAETCDYVCVMYAGKVMEYGPTRTIF HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHCHHHHCCCCCHHH KDSRHPYTMGLRNAFPSVNLSQMELISIPGYPPDLMDPPTGCRFAERCPFMENICLEQDP CCCCCCEEECHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHCCCCCC GITAITDDHYLSCHFPEKYQQFRDIAKHRSTWEKVKERMIEGEVVY CEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]