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The map label for this gene is yvrC [H]

Identifier: 188586975

GI number: 188586975

Start: 2522358

End: 2523326

Strand: Reverse

Name: yvrC [H]

Synonym: Nther_2367

Alternate gene names: 188586975

Gene position: 2523326-2522358 (Counterclockwise)

Preceding gene: 188586978

Following gene: 188586974

Centisome position: 79.71

GC content: 40.14

Gene sequence:

>969_bases
TTGAAATTTACTAGATTAAGTTTGTACAGTATTTTAATTGTAATTATAATCATGGGTTCTGGGATATTAGCAGCCTGTGG
CGATGAGGAACCAACCGATAAACAAGCCCAGGAAACTGCCGAGCAAAAGGATGGTGACAAGAAAGATCAAGAAGGGAAAG
AACAAGATCAAGACCTAGCAGTAACGGTAACTGATCATATGGACAGGGAAATTGAATTCGAATCTCATCCGGAAACAGTG
GTATCACTAATGCCTAATTTAACGGAAACTCTCTTCGCTTTGGATATGTCAGATCAGATACTGGGTATTACGGATTTTTG
TAATTATCCCCAAGAAGTAGAAGATAAAACAAGGGTTGGGGATGCCTTTGATTTAAATGTGGAAAAAATCGTCTCACTAG
AGCCAGATCTAGTAGTAATGGGCGGTGGAGAAATGATGGGTGAGATCAACGATAAACTGGATGAAATGGGCATTAAAACC
CTGGTTTTTGATCCCCAGGATTTAGATGAAGTAGAAGAAATGTTCTTAACCCTGGGCGAAGTATTCGACAGGGAAGAGGC
AGCCGAAAATCTACATGAAGAATTTAAACAGGAAAGAGAACAATTACAGTCTGAAGTATCTGATATAGATGAGACTCAAA
GTGCTGTAGTTCTCTTAGAACCGGAATCTTTGTATACCGTGGGAGAAGATGTCTTTCTGTCTGAAGTCATAGAGTTGACA
GGTGTAGAAAATATTGCATCGGATATCAGCGGTTACGATGAAATTAGTCAGGAAGTTCTACTAGACCAGGATCCTGATGT
GATTATTACTACTTATCACGACATCGAGGAATTGAAAGCCATGGGAGCTTTATCAGAATTAACGGCTGTTAAGGAAGGTC
GAGTTTATCAGGGACATGACGATAAGCTAAGCAGACCTGGTCCCAGGGTGATTGATGGCGCTCGGGAAGTATTTGAAGAA
ATTTATTAA

Upstream 100 bases:

>100_bases
TTTCGTTATCTGCATAGTCAAAGGCTGTAGTAAGCCAGTGCCTACTCTTCGGGAGAGGCATTTTTTATTGTTTTAAAATT
TTTGTAATGGAGGGGTCAAA

Downstream 100 bases:

>100_bases
TTACATTTTTGCGAGACTAAAAAGGAAGGCGGGTGTGGTATGAGGAATAAAAAAAAGATTGCCTTTTTTACAATATTAAT
ACTGGCTTTAATATTCACTT

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MKFTRLSLYSILIVIIIMGSGILAACGDEEPTDKQAQETAEQKDGDKKDQEGKEQDQDLAVTVTDHMDREIEFESHPETV
VSLMPNLTETLFALDMSDQILGITDFCNYPQEVEDKTRVGDAFDLNVEKIVSLEPDLVVMGGGEMMGEINDKLDEMGIKT
LVFDPQDLDEVEEMFLTLGEVFDREEAAENLHEEFKQEREQLQSEVSDIDETQSAVVLLEPESLYTVGEDVFLSEVIELT
GVENIASDISGYDEISQEVLLDQDPDVIITTYHDIEELKAMGALSELTAVKEGRVYQGHDDKLSRPGPRVIDGAREVFEE
IY

Sequences:

>Translated_322_residues
MKFTRLSLYSILIVIIIMGSGILAACGDEEPTDKQAQETAEQKDGDKKDQEGKEQDQDLAVTVTDHMDREIEFESHPETV
VSLMPNLTETLFALDMSDQILGITDFCNYPQEVEDKTRVGDAFDLNVEKIVSLEPDLVVMGGGEMMGEINDKLDEMGIKT
LVFDPQDLDEVEEMFLTLGEVFDREEAAENLHEEFKQEREQLQSEVSDIDETQSAVVLLEPESLYTVGEDVFLSEVIELT
GVENIASDISGYDEISQEVLLDQDPDVIITTYHDIEELKAMGALSELTAVKEGRVYQGHDDKLSRPGPRVIDGAREVFEE
IY
>Mature_322_residues
MKFTRLSLYSILIVIIIMGSGILAACGDEEPTDKQAQETAEQKDGDKKDQEGKEQDQDLAVTVTDHMDREIEFESHPETV
VSLMPNLTETLFALDMSDQILGITDFCNYPQEVEDKTRVGDAFDLNVEKIVSLEPDLVVMGGGEMMGEINDKLDEMGIKT
LVFDPQDLDEVEEMFLTLGEVFDREEAAENLHEEFKQEREQLQSEVSDIDETQSAVVLLEPESLYTVGEDVFLSEVIELT
GVENIASDISGYDEISQEVLLDQDPDVIITTYHDIEELKAMGALSELTAVKEGRVYQGHDDKLSRPGPRVIDGAREVFEE
IY

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=252, Percent_Identity=24.2063492063492, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 36112; Mature: 36112

Theoretical pI: Translated: 3.75; Mature: 3.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFTRLSLYSILIVIIIMGSGILAACGDEEPTDKQAQETAEQKDGDKKDQEGKEQDQDLA
CCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEE
VTVTDHMDREIEFESHPETVVSLMPNLTETLFALDMSDQILGITDFCNYPQEVEDKTRVG
EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHCC
DAFDLNVEKIVSLEPDLVVMGGGEMMGEINDKLDEMGIKTLVFDPQDLDEVEEMFLTLGE
CCCCCCHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
VFDREEAAENLHEEFKQEREQLQSEVSDIDETQSAVVLLEPESLYTVGEDVFLSEVIELT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCHHHHHHHHHHHH
GVENIASDISGYDEISQEVLLDQDPDVIITTYHDIEELKAMGALSELTAVKEGRVYQGHD
CHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DKLSRPGPRVIDGAREVFEEIY
CCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKFTRLSLYSILIVIIIMGSGILAACGDEEPTDKQAQETAEQKDGDKKDQEGKEQDQDLA
CCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEE
VTVTDHMDREIEFESHPETVVSLMPNLTETLFALDMSDQILGITDFCNYPQEVEDKTRVG
EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHCC
DAFDLNVEKIVSLEPDLVVMGGGEMMGEINDKLDEMGIKTLVFDPQDLDEVEEMFLTLGE
CCCCCCHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
VFDREEAAENLHEEFKQEREQLQSEVSDIDETQSAVVLLEPESLYTVGEDVFLSEVIELT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCHHHHHHHHHHHH
GVENIASDISGYDEISQEVLLDQDPDVIITTYHDIEELKAMGALSELTAVKEGRVYQGHD
CHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DKLSRPGPRVIDGAREVFEEIY
CCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]