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The map label for this gene is yvrB [H]

Identifier: 188586974

GI number: 188586974

Start: 2521257

End: 2522318

Strand: Reverse

Name: yvrB [H]

Synonym: Nther_2366

Alternate gene names: 188586974

Gene position: 2522318-2521257 (Counterclockwise)

Preceding gene: 188586975

Following gene: 188586973

Centisome position: 79.68

GC content: 41.53

Gene sequence:

>1062_bases
ATGAGGAATAAAAAAAAGATTGCCTTTTTTACAATATTAATACTGGCTTTAATATTCACTTTTGGTACAGTTACAGCCAT
TGGAGTAGCTGAGATTTCTTATAGAGATACTTATAGGATCATAGCCTCTCGCCTTCCATTTTTATCAAATGTGATTGATG
CTAACTGGGCCCAGGGTCATGAAGCTATTATCATGAATTTACGCCTACCCAGGACCCTGTTAAGTATAATGGTAGGAGCT
GCCCTGTCTATGGCAGGTACGACTTATCAGGGATTACTTCGCAATCCCCTGGCAGATCCTTTTACAATTGGAGTTTCTAG
TGGGGCTGCAGTAGGAGCCAGTCTCTATTTATTAATACAGGAACAGGAATTGTTGGCAGGATTATTTCGAACATTACCGG
AATTGATTGGTTTGCCTGGCTTTAGTTTTGCTGGTGGGATTTTGGCCTTGGCTATAGTTTATTCTTTGGCTCGAGTTGGT
GGACGAGTTCCTCCGGTAACTTTGTTGCTGGCCGGAGTTGTAGTTAGCTCATTCCTGTCAGCTGTAATTTCTTTTATCAT
GATCATTTCAGGTGAAAGCATGCAAGGAATCTTTTTTTGGATTTCAGGAGGTTTTAACCTGGCCGGATGGCAGCATGTGA
CGATTTTATTTCCTTATTTACTGGCAGGGGGAATAGTTATCTATTTTTTTGCCAGGGATTTGAATATTATTTTACTGGGA
GAAGAATCTGCTACTTATTTGGGAATTCCTGTTGAGCAGGTTAAAAAAATTTTGCTGGTGACAGCTTCTTTATTGACGGC
TGCCTGTGTGTCAGTTAGTGGCATGATAGGTTTTGTTGGCTTGATTGTACCCCATGCAGCCAGGTTGATTCTCGGGCCAG
ATCATAGGCTCTTACTTCCGGGGGCATTGCTTTTAGGCGGGATAGTCTTAGCATGGATGGATGTTTTGGCCAGGACCATG
TTGAGCCCAGCAGAAATTCCTGTAGGAGTGGTGACTGCCTTTGTTGGTGCTCCTTTCTTTTTAATTTTATTAAAGCAAAA
GCGAGACGAATTTTATTTTTAA

Upstream 100 bases:

>100_bases
AAGCAGACCTGGTCCCAGGGTGATTGATGGCGCTCGGGAAGTATTTGAAGAAATTTATTAATTACATTTTTGCGAGACTA
AAAAGGAAGGCGGGTGTGGT

Downstream 100 bases:

>100_bases
GAAATATAAACTTGAGGTGAGTTTGTACTTATGTCTGTAACATTAAAAGTGAACAATCTATCATTTTGTTATCCATCCAA
TCAGGTACTGTCTGGGTTGA

Product: transport system permease protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MRNKKKIAFFTILILALIFTFGTVTAIGVAEISYRDTYRIIASRLPFLSNVIDANWAQGHEAIIMNLRLPRTLLSIMVGA
ALSMAGTTYQGLLRNPLADPFTIGVSSGAAVGASLYLLIQEQELLAGLFRTLPELIGLPGFSFAGGILALAIVYSLARVG
GRVPPVTLLLAGVVVSSFLSAVISFIMIISGESMQGIFFWISGGFNLAGWQHVTILFPYLLAGGIVIYFFARDLNIILLG
EESATYLGIPVEQVKKILLVTASLLTAACVSVSGMIGFVGLIVPHAARLILGPDHRLLLPGALLLGGIVLAWMDVLARTM
LSPAEIPVGVVTAFVGAPFFLILLKQKRDEFYF

Sequences:

>Translated_353_residues
MRNKKKIAFFTILILALIFTFGTVTAIGVAEISYRDTYRIIASRLPFLSNVIDANWAQGHEAIIMNLRLPRTLLSIMVGA
ALSMAGTTYQGLLRNPLADPFTIGVSSGAAVGASLYLLIQEQELLAGLFRTLPELIGLPGFSFAGGILALAIVYSLARVG
GRVPPVTLLLAGVVVSSFLSAVISFIMIISGESMQGIFFWISGGFNLAGWQHVTILFPYLLAGGIVIYFFARDLNIILLG
EESATYLGIPVEQVKKILLVTASLLTAACVSVSGMIGFVGLIVPHAARLILGPDHRLLLPGALLLGGIVLAWMDVLARTM
LSPAEIPVGVVTAFVGAPFFLILLKQKRDEFYF
>Mature_353_residues
MRNKKKIAFFTILILALIFTFGTVTAIGVAEISYRDTYRIIASRLPFLSNVIDANWAQGHEAIIMNLRLPRTLLSIMVGA
ALSMAGTTYQGLLRNPLADPFTIGVSSGAAVGASLYLLIQEQELLAGLFRTLPELIGLPGFSFAGGILALAIVYSLARVG
GRVPPVTLLLAGVVVSSFLSAVISFIMIISGESMQGIFFWISGGFNLAGWQHVTILFPYLLAGGIVIYFFARDLNIILLG
EESATYLGIPVEQVKKILLVTASLLTAACVSVSGMIGFVGLIVPHAARLILGPDHRLLLPGALLLGGIVLAWMDVLARTM
LSPAEIPVGVVTAFVGAPFFLILLKQKRDEFYF

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790740, Length=296, Percent_Identity=36.8243243243243, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1790741, Length=287, Percent_Identity=33.7979094076655, Blast_Score=147, Evalue=7e-37,
Organism=Escherichia coli, GI1786805, Length=291, Percent_Identity=35.0515463917526, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI1788004, Length=294, Percent_Identity=36.734693877551, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1786347, Length=276, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1786804, Length=289, Percent_Identity=29.757785467128, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 37840; Mature: 37840

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNKKKIAFFTILILALIFTFGTVTAIGVAEISYRDTYRIIASRLPFLSNVIDANWAQGH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCC
EAIIMNLRLPRTLLSIMVGAALSMAGTTYQGLLRNPLADPFTIGVSSGAAVGASLYLLIQ
EEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEECCCCCHHHHEEEEEEE
EQELLAGLFRTLPELIGLPGFSFAGGILALAIVYSLARVGGRVPPVTLLLAGVVVSSFLS
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
AVISFIMIISGESMQGIFFWISGGFNLAGWQHVTILFPYLLAGGIVIYFFARDLNIILLG
HHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCEEEEEC
EESATYLGIPVEQVKKILLVTASLLTAACVSVSGMIGFVGLIVPHAARLILGPDHRLLLP
CCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEHH
GALLLGGIVLAWMDVLARTMLSPAEIPVGVVTAFVGAPFFLILLKQKRDEFYF
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRNKKKIAFFTILILALIFTFGTVTAIGVAEISYRDTYRIIASRLPFLSNVIDANWAQGH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCC
EAIIMNLRLPRTLLSIMVGAALSMAGTTYQGLLRNPLADPFTIGVSSGAAVGASLYLLIQ
EEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEECCCCCHHHHEEEEEEE
EQELLAGLFRTLPELIGLPGFSFAGGILALAIVYSLARVGGRVPPVTLLLAGVVVSSFLS
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
AVISFIMIISGESMQGIFFWISGGFNLAGWQHVTILFPYLLAGGIVIYFFARDLNIILLG
HHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCEEEEEC
EESATYLGIPVEQVKKILLVTASLLTAACVSVSGMIGFVGLIVPHAARLILGPDHRLLLP
CCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEHH
GALLLGGIVLAWMDVLARTMLSPAEIPVGVVTAFVGAPFFLILLKQKRDEFYF
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]