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The map label for this gene is ycbZ [H]

Identifier: 188586918

GI number: 188586918

Start: 2452770

End: 2455223

Strand: Reverse

Name: ycbZ [H]

Synonym: Nther_2309

Alternate gene names: 188586918

Gene position: 2455223-2452770 (Counterclockwise)

Preceding gene: 188586920

Following gene: 188586917

Centisome position: 77.56

GC content: 39.53

Gene sequence:

>2454_bases
ATGTCAGAACAAATTGCACCGTTAAAGAAGGAACAGTTGAAAGCTTATTGTGATGAATCTCAGTTTGAATTCAACACAAC
AGAAGAACTGGAACCATTAAAAAGCATTATTGGTCAAGACCGGGCGGTAAAGGCTATGGAATTTGGCCTACAGATTAACC
GTCAAGGCTACAATCTTTACATGTCCGGCCCAACCGGTACTGGAAAAACCAGTTATGCCAAGGCCATGACCGAAACCTAC
GCCAAAAAGTTTGATCCACCTTCTGATTGGTGCTATGTATATAACTTTAATGAACCTGAATCACCTCGAGCCCTTGAATT
ACCTGCTGGTGAAGGCTGCAATTTAGTTGAAGGGATGGAAAATCTCCTAGAAGAGGTAGGAGACGCCTTAACTAAGGCCT
TTAAGACTGAAACTTATGAAGAAAGCCGTGCACAAATTTTTAGGGACTATCAGGCCAAGCGCCGCGAACTAGTTGATAAA
TTGAACGAAGAAGGTGAAGAATACGGATTTCGATTTAAAAACACTTCTTCAGGAATAGTATCTGTCCCTGTTGTTGATGG
TAAAGAACTCAATCAGGACGAGTTTGACGAATTAGATACAGAAACCAAACGAGAAATTGAAGAGAACTCTTCTAAACTCC
ACGTAAATGTAATGAATCTTATGCGCGAACTAAAGGATTTAGATCGTGACTTAAAAGATGAACTGGATAAATTAAAAGAT
GAAACAGCTCATCAAAGTCTATCTCCTTTAATGGATCCCATGAAAGAGCGCTATCAATCCAATGACAAAGTTTTAGAATA
CCTGGAAGAGGTAGAAGAGGATATCGTTAAAAATGTAGAACATTTCATTTCCAAAGATGACGATGGAGATGACGGAGGAC
TATCTTTTTTAAAACCCCAGGCATCAAAGGAGGATATAACCAAGCGGTATCAGGTCAATCTTCTGGTGGATAATTGCGAA
CAAGAAGGGGCTCCAGTAGTTGTAGAAACTAACCCCACATATTACAATCTCCTGGGAAAAATGGAATATGTCAATAAAAT
GGGAACTGCCGTTACGGACTTTAACATGATTAAACCGGGAGCTTTTCACAGGGCCAATGGGGGTTATTTGATTCTCCAGG
CCAAAGATGTTCTTAAAACTCCCATGACCTACGAATTATTAAAACGAGTATTGAATACAGGTCAGCTCAGATTGGAAAAT
TTGGGTGAACATATAGGTATGATTGCCATGTCTTCTCTCAGACCGGAAGATATTCCTCTTAATGTAAAAGTTATCATAGT
GGGAAATGAAAAATTGTATCAGCTTTTATACCAGCTGGATGAAGAGTTTTCCAAGTTATTCAAAATCAAAGTAGATTTTG
ATTCAACCATGAATAGGACTCAGGAAAATGTAGAGAAAATGGCATCATTTATCGCTTCCCATTCTCAGGATGAGGAGTTT
AAATCATTTACCCCTTCGGGAGTAGCCAGTGTGGTAGAGTACAGTTCTCGCTTAGCTGGGCATAAAAAGAAACTATCAAC
CAAGTTTAATGAAATAGTAGAAATTATGTCTGAAGCGGATACCTGGGCTGCCCTAGAAGGAGAAGACGATGTTTCCCGTG
AACACGTCATAAAAGCAATCCAAGAGAAAAAGTATCGAGTCAACAGACCTGAAGAAAAAATTCAAGAACAAATTGATGAA
GGAAATATCATGGTCGATACAGCCGGAGAAGTGACAGGTCAGGTCAACGGACTGGCAGTTTATGATCTAGGGGATTTAAT
GTTTGGAAAACCCTTCAGGATAACAGCCAATGTCTTCCCCGGTGAACGCGGTATTATTAATATTGAACGGGAAGCTAAAT
TGAGCGGAAAAATTCACGACAAAGGAGTGCTAATTTTATCCGGCCTGATAAATGGCCTGTTTTCATATAATCAAAAGCTA
GGCCTGTCTGCTAGCCTGTGTTGTGAACAAACTTATGGGGGCATAGACGGGGATAGTGCTTCCAGTACGGAGGTATATGC
TATCTTGTCGAGTGCCGGTGAAATTCCCTTACGACAGGATTTGGCCGTAACAGGCTCTGTCAATCAAAAAGGTGAAATCC
AGCCAGTAGGTGGTGTCACTGAAAAGATTGAAGGATTTTTCACTACCTGTAAGATAAAAGGATTAACGGGTACCCAAGGT
GTTATCATTCCGAAACAGAATGAAAATAATCTTAACTTATCAGAAGAAGTGATTGAAGCTTGTGAGAGAGGAGATTTCCA
CATCTATTCTATTTCTCACATTGATGAGGGTATGGAATTGTTATCGGGAATGACTGCTGGCTTACTTGATAAAAATGAGG
AAGAAGATACAGTTTATAAGCGTGTAAAAAATAGACTGATTGAGTTCAGGAAGAATTTAAAATCAAAACAAGTAGTTAAA
ACTAGTCAAGATCAAAACAAGGAACAGGATGAAAATAGAGAACCACCACACTAA

Upstream 100 bases:

>100_bases
AAGAGGTAGCTATAATCAGTTAAGTAAAAGTGTTCTGATTTTCCAAAAGAGCCCAATAAAAGTGATTAAGTAAAGAAGAA
ATAAGAAAGGAGTCGTGACC

Downstream 100 bases:

>100_bases
ACTATATTACGATAAACAGCAGCAGAAAGCCACTGCTTTAGCTGTGGGAGTATATCAACTAATTCGCACTAATTCGCACA
ACTAAACCACATGCTAAACA

Product: peptidase S16 lon domain protein

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 817; Mature: 816

Protein sequence:

>817_residues
MSEQIAPLKKEQLKAYCDESQFEFNTTEELEPLKSIIGQDRAVKAMEFGLQINRQGYNLYMSGPTGTGKTSYAKAMTETY
AKKFDPPSDWCYVYNFNEPESPRALELPAGEGCNLVEGMENLLEEVGDALTKAFKTETYEESRAQIFRDYQAKRRELVDK
LNEEGEEYGFRFKNTSSGIVSVPVVDGKELNQDEFDELDTETKREIEENSSKLHVNVMNLMRELKDLDRDLKDELDKLKD
ETAHQSLSPLMDPMKERYQSNDKVLEYLEEVEEDIVKNVEHFISKDDDGDDGGLSFLKPQASKEDITKRYQVNLLVDNCE
QEGAPVVVETNPTYYNLLGKMEYVNKMGTAVTDFNMIKPGAFHRANGGYLILQAKDVLKTPMTYELLKRVLNTGQLRLEN
LGEHIGMIAMSSLRPEDIPLNVKVIIVGNEKLYQLLYQLDEEFSKLFKIKVDFDSTMNRTQENVEKMASFIASHSQDEEF
KSFTPSGVASVVEYSSRLAGHKKKLSTKFNEIVEIMSEADTWAALEGEDDVSREHVIKAIQEKKYRVNRPEEKIQEQIDE
GNIMVDTAGEVTGQVNGLAVYDLGDLMFGKPFRITANVFPGERGIINIEREAKLSGKIHDKGVLILSGLINGLFSYNQKL
GLSASLCCEQTYGGIDGDSASSTEVYAILSSAGEIPLRQDLAVTGSVNQKGEIQPVGGVTEKIEGFFTTCKIKGLTGTQG
VIIPKQNENNLNLSEEVIEACERGDFHIYSISHIDEGMELLSGMTAGLLDKNEEEDTVYKRVKNRLIEFRKNLKSKQVVK
TSQDQNKEQDENREPPH

Sequences:

>Translated_817_residues
MSEQIAPLKKEQLKAYCDESQFEFNTTEELEPLKSIIGQDRAVKAMEFGLQINRQGYNLYMSGPTGTGKTSYAKAMTETY
AKKFDPPSDWCYVYNFNEPESPRALELPAGEGCNLVEGMENLLEEVGDALTKAFKTETYEESRAQIFRDYQAKRRELVDK
LNEEGEEYGFRFKNTSSGIVSVPVVDGKELNQDEFDELDTETKREIEENSSKLHVNVMNLMRELKDLDRDLKDELDKLKD
ETAHQSLSPLMDPMKERYQSNDKVLEYLEEVEEDIVKNVEHFISKDDDGDDGGLSFLKPQASKEDITKRYQVNLLVDNCE
QEGAPVVVETNPTYYNLLGKMEYVNKMGTAVTDFNMIKPGAFHRANGGYLILQAKDVLKTPMTYELLKRVLNTGQLRLEN
LGEHIGMIAMSSLRPEDIPLNVKVIIVGNEKLYQLLYQLDEEFSKLFKIKVDFDSTMNRTQENVEKMASFIASHSQDEEF
KSFTPSGVASVVEYSSRLAGHKKKLSTKFNEIVEIMSEADTWAALEGEDDVSREHVIKAIQEKKYRVNRPEEKIQEQIDE
GNIMVDTAGEVTGQVNGLAVYDLGDLMFGKPFRITANVFPGERGIINIEREAKLSGKIHDKGVLILSGLINGLFSYNQKL
GLSASLCCEQTYGGIDGDSASSTEVYAILSSAGEIPLRQDLAVTGSVNQKGEIQPVGGVTEKIEGFFTTCKIKGLTGTQG
VIIPKQNENNLNLSEEVIEACERGDFHIYSISHIDEGMELLSGMTAGLLDKNEEEDTVYKRVKNRLIEFRKNLKSKQVVK
TSQDQNKEQDENREPPH
>Mature_816_residues
SEQIAPLKKEQLKAYCDESQFEFNTTEELEPLKSIIGQDRAVKAMEFGLQINRQGYNLYMSGPTGTGKTSYAKAMTETYA
KKFDPPSDWCYVYNFNEPESPRALELPAGEGCNLVEGMENLLEEVGDALTKAFKTETYEESRAQIFRDYQAKRRELVDKL
NEEGEEYGFRFKNTSSGIVSVPVVDGKELNQDEFDELDTETKREIEENSSKLHVNVMNLMRELKDLDRDLKDELDKLKDE
TAHQSLSPLMDPMKERYQSNDKVLEYLEEVEEDIVKNVEHFISKDDDGDDGGLSFLKPQASKEDITKRYQVNLLVDNCEQ
EGAPVVVETNPTYYNLLGKMEYVNKMGTAVTDFNMIKPGAFHRANGGYLILQAKDVLKTPMTYELLKRVLNTGQLRLENL
GEHIGMIAMSSLRPEDIPLNVKVIIVGNEKLYQLLYQLDEEFSKLFKIKVDFDSTMNRTQENVEKMASFIASHSQDEEFK
SFTPSGVASVVEYSSRLAGHKKKLSTKFNEIVEIMSEADTWAALEGEDDVSREHVIKAIQEKKYRVNRPEEKIQEQIDEG
NIMVDTAGEVTGQVNGLAVYDLGDLMFGKPFRITANVFPGERGIINIEREAKLSGKIHDKGVLILSGLINGLFSYNQKLG
LSASLCCEQTYGGIDGDSASSTEVYAILSSAGEIPLRQDLAVTGSVNQKGEIQPVGGVTEKIEGFFTTCKIKGLTGTQGV
IIPKQNENNLNLSEEVIEACERGDFHIYSISHIDEGMELLSGMTAGLLDKNEEEDTVYKRVKNRLIEFRKNLKSKQVVKT
SQDQNKEQDENREPPH

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=440, Percent_Identity=31.1363636363636, Blast_Score=229, Evalue=4e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 92119; Mature: 91988

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQIAPLKKEQLKAYCDESQFEFNTTEELEPLKSIIGQDRAVKAMEFGLQINRQGYNLY
CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCEEEECCCCEEE
MSGPTGTGKTSYAKAMTETYAKKFDPPSDWCYVYNFNEPESPRALELPAGEGCNLVEGME
EECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEECCCCCCCCHHHHHH
NLLEEVGDALTKAFKTETYEESRAQIFRDYQAKRRELVDKLNEEGEEYGFRFKNTSSGIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEECCCCCEE
SVPVVDGKELNQDEFDELDTETKREIEENSSKLHVNVMNLMRELKDLDRDLKDELDKLKD
EEEECCCCCCCHHHHHHHCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
ETAHQSLSPLMDPMKERYQSNDKVLEYLEEVEEDIVKNVEHFISKDDDGDDGGLSFLKPQ
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
ASKEDITKRYQVNLLVDNCEQEGAPVVVETNPTYYNLLGKMEYVNKMGTAVTDFNMIKPG
CCHHHHHHHEEEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCHHHCCCCCCCC
AFHRANGGYLILQAKDVLKTPMTYELLKRVLNTGQLRLENLGEHIGMIAMSSLRPEDIPL
CCEECCCCEEEEEEHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
NVKVIIVGNEKLYQLLYQLDEEFSKLFKIKVDFDSTMNRTQENVEKMASFIASHSQDEEF
EEEEEEECCHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHH
KSFTPSGVASVVEYSSRLAGHKKKLSTKFNEIVEIMSEADTWAALEGEDDVSREHVIKAI
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
QEKKYRVNRPEEKIQEQIDEGNIMVDTAGEVTGQVNGLAVYDLGDLMFGKPFRITANVFP
HHHHHCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECCHHHCCCCEEEEEEECC
GERGIINIEREAKLSGKIHDKGVLILSGLINGLFSYNQKLGLSASLCCEQTYGGIDGDSA
CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCHHCCCCHHHHHHHHCCCCCCCCC
SSTEVYAILSSAGEIPLRQDLAVTGSVNQKGEIQPVGGVTEKIEGFFTTCKIKGLTGTQG
CCCHHEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHEEEEEEECCCCCCE
VIIPKQNENNLNLSEEVIEACERGDFHIYSISHIDEGMELLSGMTAGLLDKNEEEDTVYK
EEEECCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
RVKNRLIEFRKNLKSKQVVKTSQDQNKEQDENREPPH
HHHHHHHHHHHCCCHHHHHHCCHHCCCCHHCCCCCCC
>Mature Secondary Structure 
SEQIAPLKKEQLKAYCDESQFEFNTTEELEPLKSIIGQDRAVKAMEFGLQINRQGYNLY
CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCEEEECCCCEEE
MSGPTGTGKTSYAKAMTETYAKKFDPPSDWCYVYNFNEPESPRALELPAGEGCNLVEGME
EECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEECCCCCCCCHHHHHH
NLLEEVGDALTKAFKTETYEESRAQIFRDYQAKRRELVDKLNEEGEEYGFRFKNTSSGIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEECCCCCEE
SVPVVDGKELNQDEFDELDTETKREIEENSSKLHVNVMNLMRELKDLDRDLKDELDKLKD
EEEECCCCCCCHHHHHHHCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
ETAHQSLSPLMDPMKERYQSNDKVLEYLEEVEEDIVKNVEHFISKDDDGDDGGLSFLKPQ
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
ASKEDITKRYQVNLLVDNCEQEGAPVVVETNPTYYNLLGKMEYVNKMGTAVTDFNMIKPG
CCHHHHHHHEEEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCHHHCCCCCCCC
AFHRANGGYLILQAKDVLKTPMTYELLKRVLNTGQLRLENLGEHIGMIAMSSLRPEDIPL
CCEECCCCEEEEEEHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
NVKVIIVGNEKLYQLLYQLDEEFSKLFKIKVDFDSTMNRTQENVEKMASFIASHSQDEEF
EEEEEEECCHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHH
KSFTPSGVASVVEYSSRLAGHKKKLSTKFNEIVEIMSEADTWAALEGEDDVSREHVIKAI
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
QEKKYRVNRPEEKIQEQIDEGNIMVDTAGEVTGQVNGLAVYDLGDLMFGKPFRITANVFP
HHHHHCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECCHHHCCCCEEEEEEECC
GERGIINIEREAKLSGKIHDKGVLILSGLINGLFSYNQKLGLSASLCCEQTYGGIDGDSA
CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCHHCCCCHHHHHHHHCCCCCCCCC
SSTEVYAILSSAGEIPLRQDLAVTGSVNQKGEIQPVGGVTEKIEGFFTTCKIKGLTGTQG
CCCHHEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHEEEEEEECCCCCCE
VIIPKQNENNLNLSEEVIEACERGDFHIYSISHIDEGMELLSGMTAGLLDKNEEEDTVYK
EEEECCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
RVKNRLIEFRKNLKSKQVVKTSQDQNKEQDENREPPH
HHHHHHHHHHHCCCHHHHHHCCHHCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]