Click here to switch to the map view.

The map label for this gene is fdhD [H]

Identifier: 188586886

GI number: 188586886

Start: 2420943

End: 2421719

Strand: Reverse

Name: fdhD [H]

Synonym: Nther_2277

Alternate gene names: 188586886

Gene position: 2421719-2420943 (Counterclockwise)

Preceding gene: 188586887

Following gene: 188586884

Centisome position: 76.5

GC content: 41.18

Gene sequence:

>777_bases
ATGATACAGTTAAAGGGGGGCTCGACTATTAACAGAATAGAACTACCAGTAAGTGAGGAACGCCCTGTAGATTTAATAGT
AAATGACCAGCATTTAACAACTTTTATGTGTACCCCCAAAGAATTAAAACAGCTAGCCGTTGGTCATTTACTGGCAAGGC
AAATGATTACATCCATAGCTGATATCCACATGATCGGAGCCTGTGATGACATGCGTAAAATTTATGTTAAAATTGGCAAG
GAATTGCCTGAACAAGACTTGTCCCTTGGAAAAGTCATCGCATCAGGTTGTGGAAGTGGCAGTGCTATAAACAATGAGAA
CATTGTCAATCGTAAGATTGATTCCAACTTTGAGCTTAGTGAGACCGTTTTAAAAGAGGCCTTTACAGAAATGCATCGCC
AGGCAGTAGAATACCAGAGAACCGGAGGCCTACACTCGGCAGCTTTAGTGAATGAGTCCGGTGTATTGACAGTCCAAGAG
GACGTAGGTAGACACAATGCTATTGATAAACTTCTAGGAACAACATTATTCAAAGGATATGAGTCCGGAAAATTAGCATT
AATTACAACGGGCAGGTTATCTTCGGATATGGTTCTTAAAGCCTTGGGTGCAGGATTTCCTTTGGTGGCTACTCGAAGTA
TTCCTACTTCAATGGCTTTGGAAATTGCTGAAACAGCTGGAATTACCCTGGTGGGCCGTGCTCATCGTACCCAAAAATAT
TTTTACTGTCATACAGATAGAATTAAACCTAAGCTAAAAGAAGGGAAGCAGTCATAG

Upstream 100 bases:

>100_bases
TAACGGAGTTAAATACTTGTACTCCGAACAACACATGAATGAGAGGTATGCAGCTAAATTAGCCGATAACATAGAGTATC
GTCTTAAAGGCTAGGCTAAT

Downstream 100 bases:

>100_bases
ACTGCTTCCCTTTTTCTTTTGTATTCTTATTATTCTTATTGTTTTTGGTTTTAGGAATGCTAATTTATAAAACAAACTCT
GAAGCTAGAAAAGCTTAAAA

Product: formate dehydrogenase family accessory protein FdhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MIQLKGGSTINRIELPVSEERPVDLIVNDQHLTTFMCTPKELKQLAVGHLLARQMITSIADIHMIGACDDMRKIYVKIGK
ELPEQDLSLGKVIASGCGSGSAINNENIVNRKIDSNFELSETVLKEAFTEMHRQAVEYQRTGGLHSAALVNESGVLTVQE
DVGRHNAIDKLLGTTLFKGYESGKLALITTGRLSSDMVLKALGAGFPLVATRSIPTSMALEIAETAGITLVGRAHRTQKY
FYCHTDRIKPKLKEGKQS

Sequences:

>Translated_258_residues
MIQLKGGSTINRIELPVSEERPVDLIVNDQHLTTFMCTPKELKQLAVGHLLARQMITSIADIHMIGACDDMRKIYVKIGK
ELPEQDLSLGKVIASGCGSGSAINNENIVNRKIDSNFELSETVLKEAFTEMHRQAVEYQRTGGLHSAALVNESGVLTVQE
DVGRHNAIDKLLGTTLFKGYESGKLALITTGRLSSDMVLKALGAGFPLVATRSIPTSMALEIAETAGITLVGRAHRTQKY
FYCHTDRIKPKLKEGKQS
>Mature_258_residues
MIQLKGGSTINRIELPVSEERPVDLIVNDQHLTTFMCTPKELKQLAVGHLLARQMITSIADIHMIGACDDMRKIYVKIGK
ELPEQDLSLGKVIASGCGSGSAINNENIVNRKIDSNFELSETVLKEAFTEMHRQAVEYQRTGGLHSAALVNESGVLTVQE
DVGRHNAIDKLLGTTLFKGYESGKLALITTGRLSSDMVLKALGAGFPLVATRSIPTSMALEIAETAGITLVGRAHRTQKY
FYCHTDRIKPKLKEGKQS

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=245, Percent_Identity=29.3877551020408, Blast_Score=85, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 28217; Mature: 28217

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQLKGGSTINRIELPVSEERPVDLIVNDQHLTTFMCTPKELKQLAVGHLLARQMITSIA
CEEECCCCCEEEEECCCCCCCCEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHH
DIHMIGACDDMRKIYVKIGKELPEQDLSLGKVIASGCGSGSAINNENIVNRKIDSNFELS
HHHEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH
ETVLKEAFTEMHRQAVEYQRTGGLHSAALVNESGVLTVQEDVGRHNAIDKLLGTTLFKGY
HHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCCEEEHHHCCCHHHHHHHHHHHHHCCC
ESGKLALITTGRLSSDMVLKALGAGFPLVATRSIPTSMALEIAETAGITLVGRAHRTQKY
CCCCEEEEECCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCEEEEECCCCCCEE
FYCHTDRIKPKLKEGKQS
EEEECCCCCCHHHCCCCC
>Mature Secondary Structure
MIQLKGGSTINRIELPVSEERPVDLIVNDQHLTTFMCTPKELKQLAVGHLLARQMITSIA
CEEECCCCCEEEEECCCCCCCCEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHH
DIHMIGACDDMRKIYVKIGKELPEQDLSLGKVIASGCGSGSAINNENIVNRKIDSNFELS
HHHEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH
ETVLKEAFTEMHRQAVEYQRTGGLHSAALVNESGVLTVQEDVGRHNAIDKLLGTTLFKGY
HHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCCEEEHHHCCCHHHHHHHHHHHHHCCC
ESGKLALITTGRLSSDMVLKALGAGFPLVATRSIPTSMALEIAETAGITLVGRAHRTQKY
CCCCEEEEECCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCEEEEECCCCCCEE
FYCHTDRIKPKLKEGKQS
EEEECCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA