Click here to switch to the map view.

The map label for this gene is liaF [H]

Identifier: 188586691

GI number: 188586691

Start: 2200850

End: 2201650

Strand: Reverse

Name: liaF [H]

Synonym: Nther_2081

Alternate gene names: 188586691

Gene position: 2201650-2200850 (Counterclockwise)

Preceding gene: 188586692

Following gene: 188586690

Centisome position: 69.55

GC content: 36.2

Gene sequence:

>801_bases
ATGAAACAGTTGCTTGGAACCATCATAATTGTTATTGGTTTAGTGTTTCTTTTGGACAATTTAGGAATTATCGAGCATGA
ACTTGATAGTCTATTAACTTTGTGGCCGCTATTAATTGTAGCTTTGGGAGTCAAAATATCTATTAAAGGTATATTTTCTG
CATGGGTAGCTTTAATGAAAAGACGGATAGCTTTTGGTAAATTAATATTTGGCCTGATAGTTATAGGTATCGGTATGAAC
TTTCTCTCCAGGACCACAGGGTTGTTTGAATTTCCTATGTCAGACCTATGGAGTTGGACCTGGCCTGTACTCATTATATA
TATAGGTTTAAAGCTGATAATTGATCGAGACGAATGGAGTCATTTTAGTGTCTCAGGTGATATGTTTGGCAACAAATTTA
ATCATAAGAGGGACTTTAATGAGGAATTCATGAACAAAAGCAAGACTATGGTAGGAGATATAAATTGGGGGAAGAATCCT
TGGAAGGTTGGACATAAAGAGTTGAAAGTAGGTGTTAGTGATGCGGATATTGATTTTACCACGGCAATTTTAGAACCTGG
AGAAAATGTGTTTGTCTATAAAGGCTGGGTAGGATCCGTCGAAATGCTTGTACCTAGAGATATCCCCGTTCATGTGGAAA
CATTTGTAAAAATTGGTGATATGACAATTTTTGACGAAAATAATGCAGGTATGAGTCGTCCTGTAATTTATACTAGTCCA
AATTATCAGGATGCAGAAAGAAAATTAAAAATTATTGTAATGCTCTCCGTTGGAGAGGTGGGCGTTTATGCCGTTGATTA
A

Upstream 100 bases:

>100_bases
AATCAATTGGCGAATCGGAAATTAAAATGTACAATAAATTTAGAGTGTAATTGAACTTAATTAACTTGGAGTGAGACTAA
TATTGAAAGAGGGGGTAGCC

Downstream 100 bases:

>100_bases
GAAGTTAATCACTAAATTGAGGCCAAAGGGGATTTTATGGGAATTTTTTCAGCGGCAATTAGTGGGTGCCCTGGCGGCAG
GTTTAATTATATTTTTTTGT

Product: membrane protein-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MKQLLGTIIIVIGLVFLLDNLGIIEHELDSLLTLWPLLIVALGVKISIKGIFSAWVALMKRRIAFGKLIFGLIVIGIGMN
FLSRTTGLFEFPMSDLWSWTWPVLIIYIGLKLIIDRDEWSHFSVSGDMFGNKFNHKRDFNEEFMNKSKTMVGDINWGKNP
WKVGHKELKVGVSDADIDFTTAILEPGENVFVYKGWVGSVEMLVPRDIPVHVETFVKIGDMTIFDENNAGMSRPVIYTSP
NYQDAERKLKIIVMLSVGEVGVYAVD

Sequences:

>Translated_266_residues
MKQLLGTIIIVIGLVFLLDNLGIIEHELDSLLTLWPLLIVALGVKISIKGIFSAWVALMKRRIAFGKLIFGLIVIGIGMN
FLSRTTGLFEFPMSDLWSWTWPVLIIYIGLKLIIDRDEWSHFSVSGDMFGNKFNHKRDFNEEFMNKSKTMVGDINWGKNP
WKVGHKELKVGVSDADIDFTTAILEPGENVFVYKGWVGSVEMLVPRDIPVHVETFVKIGDMTIFDENNAGMSRPVIYTSP
NYQDAERKLKIIVMLSVGEVGVYAVD
>Mature_266_residues
MKQLLGTIIIVIGLVFLLDNLGIIEHELDSLLTLWPLLIVALGVKISIKGIFSAWVALMKRRIAFGKLIFGLIVIGIGMN
FLSRTTGLFEFPMSDLWSWTWPVLIIYIGLKLIIDRDEWSHFSVSGDMFGNKFNHKRDFNEEFMNKSKTMVGDINWGKNP
WKVGHKELKVGVSDADIDFTTAILEPGENVFVYKGWVGSVEMLVPRDIPVHVETFVKIGDMTIFDENNAGMSRPVIYTSP
NYQDAERKLKIIVMLSVGEVGVYAVD

Specific function: Unknown

COG id: COG4758

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016975 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30041; Mature: 30041

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLLGTIIIVIGLVFLLDNLGIIEHELDSLLTLWPLLIVALGVKISIKGIFSAWVALMK
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHH
RRIAFGKLIFGLIVIGIGMNFLSRTTGLFEFPMSDLWSWTWPVLIIYIGLKLIIDRDEWS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHEEEECCCCC
HFSVSGDMFGNKFNHKRDFNEEFMNKSKTMVGDINWGKNPWKVGHKELKVGVSDADIDFT
EEEECCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCHHCCCHHEEECCCCCCCCEE
TAILEPGENVFVYKGWVGSVEMLVPRDIPVHVETFVKIGDMTIFDENNAGMSRPVIYTSP
EEEECCCCEEEEEECCCCCEEEEECCCCCCHHHHHEEECCEEEEECCCCCCCCCEEEECC
NYQDAERKLKIIVMLSVGEVGVYAVD
CCCCCCCEEEEEEEEEECCEEEEEEC
>Mature Secondary Structure
MKQLLGTIIIVIGLVFLLDNLGIIEHELDSLLTLWPLLIVALGVKISIKGIFSAWVALMK
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHH
RRIAFGKLIFGLIVIGIGMNFLSRTTGLFEFPMSDLWSWTWPVLIIYIGLKLIIDRDEWS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHEEEECCCCC
HFSVSGDMFGNKFNHKRDFNEEFMNKSKTMVGDINWGKNPWKVGHKELKVGVSDADIDFT
EEEECCCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCHHCCCHHEEECCCCCCCCEE
TAILEPGENVFVYKGWVGSVEMLVPRDIPVHVETFVKIGDMTIFDENNAGMSRPVIYTSP
EEEECCCCEEEEEECCCCCEEEEECCCCCCHHHHHEEECCEEEEECCCCCCCCCEEEECC
NYQDAERKLKIIVMLSVGEVGVYAVD
CCCCCCCEEEEEEEEEECCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377; 12207695 [H]