Click here to switch to the map view.

The map label for this gene is ydhD [H]

Identifier: 188586671

GI number: 188586671

Start: 2178453

End: 2180018

Strand: Reverse

Name: ydhD [H]

Synonym: Nther_2061

Alternate gene names: 188586671

Gene position: 2180018-2178453 (Counterclockwise)

Preceding gene: 188586672

Following gene: 188586670

Centisome position: 68.87

GC content: 35.31

Gene sequence:

>1566_bases
ATGTTTAATCAAACACTAACTACAAATAGGATTGCTAAAATTGTTGTTTTAGGTTTATTTTTCTTATGTTTTTTATTACC
GAAGGTGGGTATGACGCATTCTTCGGACCATGAACTGAATATTTATTTAGATCAAGAACTAGTGGAATTTGATGTATCAC
CAATTATTCGAGATGGTAGGACTTTGGTACCTTTTAGAAAATTAGCGGAAAGTTTAGATGTGACAGTTGATTGGAATAGC
GAAACAGAAACAATAACAGCGTATTCTGAGGAAAAAAACCTGGTAATGCAAATTGACTCTGATGAAGTGATATTGAACGG
ACATAGAGACACTTTAGAAGTGCCCCCTCAAATCACAAGTGGTCGTACCCTGATTCCACTTAGATTTTTTAGTGAAACCT
TTGGTGTTCAGGTAGAATATAAGCAAGGTGAAATAAGGATGACTTCAACAAAACCGGAGCCCGATGAATTAACTATAGAT
GGTACTTTATCAGCTTTTTATGCCCATGGCTATGGAGAAAGGTCTAGTTGGGAAGAGCTTTTCGGTGCAGCATATCCTCA
AAAAAGTGAAGACTCTAGGGTGAATCTTTTCTCAAATATCCATCTGGGTTGGTTTGAAGTTTCTGATAAAGGACATTTAG
TCACTGATGGTAAAGAGCATGGTTTTAGAAGACCAGCTGGTTATCAAGATGTGATCGAAAATTTATCTCAAGAAAATGTC
CACGGAAACTTAACTGTCTTTGGTCGTCAAGGAGAAAATGGTGTCGAACAAGTGCTTCTTGACGAAAGTAAGAGAGAACT
ACTGATAAGTGATATTATAGAAGAACTTAAAGAAGATGGTTATTCTGGTGTTAACTTAGATATAGAAGAACTAGGTAAAA
GTCAAGATCAGGAACAGAACGAAGCTATCAAATCGGCATACATAGATTTTGTAACTGAAATAGATGAACAATTATCCGAA
GAAAAACAGTTGATATTAACAGTTCCTCCTGCAAACAGTTTTTACAGAGGTTATGATTATGAACAGTTAGGTGATATTGC
CGACAAGATGGTTGTAATGGCCTACGATTATCATGATAGAAATTTACCTAGTGCAACAGCACCAATAAATAAGGTGGAAG
AAGGAATTCAACAATTAGTAGAATTAGTTGATTCAGATAAGATTGTTCTGGGAGTTCGTCTTCCTGCAGTTAGATATAGG
GAAGTAGAAAGCAGCAATGGTGATCAAGTAGAACAAGACTCAGATTTAGTTGAAGAAGAAAAAGAACGAGAAATAACTAG
CAAATGGATGATTTCACACCCTTATTTGGATTCCGTATACGACTTTAAAGAGGAAAAAGGAATAGATAAACAATGGGACG
AGCAATCTGCTGTGAATTATTTGAGCTTTACTGATGAAAAAGGTTTAAAAAATTATATATATATGGAAAGTGAACGCAGT
TTGATGAAAAAATGGGAATTAGTCGATAAATATCAGTTACGAGGCGCTTCCCTCTGGAGACTTGGCGTTATTCCAGAGTT
TGTTTATGAACAAATCGATGAAATATTTTCCAAAAAAATTAATTAA

Upstream 100 bases:

>100_bases
TGCTACTAATATGATATCATAGAAATAAATAATTACCCTAAAAATAACGAAACCTTTATGGACTTTCCCTTTCCCTTTAT
TAAAATTGGAGGTGTAATAC

Downstream 100 bases:

>100_bases
TTAAGAAGGATTTTATTGAAAAAGAAAGAAAAATGTTTATATATAGAGAGTAACATATGTCGAAGATTACATTTGATATC
AATGATTATTAATTAATAGG

Product: copper amine oxidase domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 521

Protein sequence:

>521_residues
MFNQTLTTNRIAKIVVLGLFFLCFLLPKVGMTHSSDHELNIYLDQELVEFDVSPIIRDGRTLVPFRKLAESLDVTVDWNS
ETETITAYSEEKNLVMQIDSDEVILNGHRDTLEVPPQITSGRTLIPLRFFSETFGVQVEYKQGEIRMTSTKPEPDELTID
GTLSAFYAHGYGERSSWEELFGAAYPQKSEDSRVNLFSNIHLGWFEVSDKGHLVTDGKEHGFRRPAGYQDVIENLSQENV
HGNLTVFGRQGENGVEQVLLDESKRELLISDIIEELKEDGYSGVNLDIEELGKSQDQEQNEAIKSAYIDFVTEIDEQLSE
EKQLILTVPPANSFYRGYDYEQLGDIADKMVVMAYDYHDRNLPSATAPINKVEEGIQQLVELVDSDKIVLGVRLPAVRYR
EVESSNGDQVEQDSDLVEEEKEREITSKWMISHPYLDSVYDFKEEKGIDKQWDEQSAVNYLSFTDEKGLKNYIYMESERS
LMKKWELVDKYQLRGASLWRLGVIPEFVYEQIDEIFSKKIN

Sequences:

>Translated_521_residues
MFNQTLTTNRIAKIVVLGLFFLCFLLPKVGMTHSSDHELNIYLDQELVEFDVSPIIRDGRTLVPFRKLAESLDVTVDWNS
ETETITAYSEEKNLVMQIDSDEVILNGHRDTLEVPPQITSGRTLIPLRFFSETFGVQVEYKQGEIRMTSTKPEPDELTID
GTLSAFYAHGYGERSSWEELFGAAYPQKSEDSRVNLFSNIHLGWFEVSDKGHLVTDGKEHGFRRPAGYQDVIENLSQENV
HGNLTVFGRQGENGVEQVLLDESKRELLISDIIEELKEDGYSGVNLDIEELGKSQDQEQNEAIKSAYIDFVTEIDEQLSE
EKQLILTVPPANSFYRGYDYEQLGDIADKMVVMAYDYHDRNLPSATAPINKVEEGIQQLVELVDSDKIVLGVRLPAVRYR
EVESSNGDQVEQDSDLVEEEKEREITSKWMISHPYLDSVYDFKEEKGIDKQWDEQSAVNYLSFTDEKGLKNYIYMESERS
LMKKWELVDKYQLRGASLWRLGVIPEFVYEQIDEIFSKKIN
>Mature_521_residues
MFNQTLTTNRIAKIVVLGLFFLCFLLPKVGMTHSSDHELNIYLDQELVEFDVSPIIRDGRTLVPFRKLAESLDVTVDWNS
ETETITAYSEEKNLVMQIDSDEVILNGHRDTLEVPPQITSGRTLIPLRFFSETFGVQVEYKQGEIRMTSTKPEPDELTID
GTLSAFYAHGYGERSSWEELFGAAYPQKSEDSRVNLFSNIHLGWFEVSDKGHLVTDGKEHGFRRPAGYQDVIENLSQENV
HGNLTVFGRQGENGVEQVLLDESKRELLISDIIEELKEDGYSGVNLDIEELGKSQDQEQNEAIKSAYIDFVTEIDEQLSE
EKQLILTVPPANSFYRGYDYEQLGDIADKMVVMAYDYHDRNLPSATAPINKVEEGIQQLVELVDSDKIVLGVRLPAVRYR
EVESSNGDQVEQDSDLVEEEKEREITSKWMISHPYLDSVYDFKEEKGIDKQWDEQSAVNYLSFTDEKGLKNYIYMESERS
LMKKWELVDKYQLRGASLWRLGVIPEFVYEQIDEIFSKKIN

Specific function: Unknown

COG id: COG3858

COG function: function code R; Predicted glycosyl hydrolase

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011583
- InterPro:   IPR001223
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF00704 Glyco_hydro_18; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 59852; Mature: 59852

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNQTLTTNRIAKIVVLGLFFLCFLLPKVGMTHSSDHELNIYLDQELVEFDVSPIIRDGR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHCCCHHHHCCC
TLVPFRKLAESLDVTVDWNSETETITAYSEEKNLVMQIDSDEVILNGHRDTLEVPPQITS
EECHHHHHHHHCEEEEECCCCCCEEEEEECCCCEEEEECCCCEEEECCCCCEECCCCCCC
GRTLIPLRFFSETFGVQVEYKQGEIRMTSTKPEPDELTIDGTLSAFYAHGYGERSSWEEL
CCEEEEHHHHHHHHCEEEEEECCEEEEECCCCCCCCEEECCHHHHHHHCCCCCCCCHHHH
FGAAYPQKSEDSRVNLFSNIHLGWFEVSDKGHLVTDGKEHGFRRPAGYQDVIENLSQENV
HHCCCCCCCCCCCEEEEEECEEEEEEECCCCCEEECCHHCCCCCCCCHHHHHHHHHHCCC
HGNLTVFGRQGENGVEQVLLDESKRELLISDIIEELKEDGYSGVNLDIEELGKSQDQEQN
CCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHH
EAIKSAYIDFVTEIDEQLSEEKQLILTVPPANSFYRGYDYEQLGDIADKMVVMAYDYHDR
HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHCCCCHHHHHHHHHCEEEEEEECCCC
NLPSATAPINKVEEGIQQLVELVDSDKIVLGVRLPAVRYREVESSNGDQVEQDSDLVEEE
CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHH
KEREITSKWMISHPYLDSVYDFKEEKGIDKQWDEQSAVNYLSFTDEKGLKNYIYMESERS
HHHHHHHHHEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHEECCCCCCCCEEEECCHHH
LMKKWELVDKYQLRGASLWRLGVIPEFVYEQIDEIFSKKIN
HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFNQTLTTNRIAKIVVLGLFFLCFLLPKVGMTHSSDHELNIYLDQELVEFDVSPIIRDGR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHCCCHHHHCCC
TLVPFRKLAESLDVTVDWNSETETITAYSEEKNLVMQIDSDEVILNGHRDTLEVPPQITS
EECHHHHHHHHCEEEEECCCCCCEEEEEECCCCEEEEECCCCEEEECCCCCEECCCCCCC
GRTLIPLRFFSETFGVQVEYKQGEIRMTSTKPEPDELTIDGTLSAFYAHGYGERSSWEEL
CCEEEEHHHHHHHHCEEEEEECCEEEEECCCCCCCCEEECCHHHHHHHCCCCCCCCHHHH
FGAAYPQKSEDSRVNLFSNIHLGWFEVSDKGHLVTDGKEHGFRRPAGYQDVIENLSQENV
HHCCCCCCCCCCCEEEEEECEEEEEEECCCCCEEECCHHCCCCCCCCHHHHHHHHHHCCC
HGNLTVFGRQGENGVEQVLLDESKRELLISDIIEELKEDGYSGVNLDIEELGKSQDQEQN
CCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHH
EAIKSAYIDFVTEIDEQLSEEKQLILTVPPANSFYRGYDYEQLGDIADKMVVMAYDYHDR
HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHCCCCHHHHHHHHHCEEEEEEECCCC
NLPSATAPINKVEEGIQQLVELVDSDKIVLGVRLPAVRYREVESSNGDQVEQDSDLVEEE
CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHH
KEREITSKWMISHPYLDSVYDFKEEKGIDKQWDEQSAVNYLSFTDEKGLKNYIYMESERS
HHHHHHHHHEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHEECCCCCCCCEEEECCHHH
LMKKWELVDKYQLRGASLWRLGVIPEFVYEQIDEIFSKKIN
HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377; 12177332 [H]