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The map label for this gene is ycdX [C]

Identifier: 188586635

GI number: 188586635

Start: 2136761

End: 2137588

Strand: Reverse

Name: ycdX [C]

Synonym: Nther_2025

Alternate gene names: 188586635

Gene position: 2137588-2136761 (Counterclockwise)

Preceding gene: 188586636

Following gene: 188586634

Centisome position: 67.53

GC content: 33.82

Gene sequence:

>828_bases
ATGGTTAATATTCTATCTGATTATCATATTCATACAAAATATAGTCACGGGAAAGGTACTATTAAAGAGAATGTATTAGC
GGCCAGGGAAAAAGGATTAAAGGAATTAGGTATCAATGATCATGGGCCGGCCAGCCTGGGATTCGGGATTGATGGCGAGA
ATGATTTGTATTATATGAAAAGAGAAATTAATGGTTTGAATAAAGTTTTTAACGATATTTCCATATATCTTGGACTAGAA
GCCAATGTAATAGCTGAAGATGGCACACTGGATATTAATGATAAAATGTTATCTTATCTTGATTATCTCAGCGTAGGTTT
ACATTTAATGATACGTCCTAAAACTATTAAAGATTTTAACGGAATAATAGTACGGAACTGGTTCAACAAGCTGAGTAGAT
TAGGGGGAATTTCTGATAATTGGTCTTTTTTACATAATTATCGCAAGGATATCAGAAAGAAAAATACTGACATGTTGTGT
AGAGCATTGGATAATTATCCGATTTTTATGATTACTCATCCAGGAATTCATTTAGATATAGATACAGACATTTTAGCCAA
GTATTGTGGTGAAAAGGGTGTTTATCTGGAAATTAACTGTGCTCATTTAGATAAAATAAAGAGTTATGTATGGGAAGCTT
CTAAAGCCTCGCCACATGTAAAATTTATATTAAATAGTGATGCTCATGTACCAAATAGAGTGGGAGAATTGACGGCTGGA
GCTAATTTATGTCAGGAATTGGGGCTTGGGAAAGAACGGGTTGTTAATATTTCATCCGAGCAGGATAAAAACCTTGTGAT
GAAGAATTATGTATCAAGGAAGGAGTAA

Upstream 100 bases:

>100_bases
CTAAAAAAATTAGCTCAAGCTTCTCAAGCTTCTCTATATATTGTTGAAGAACTGCAAAAAGAATCATTAGCACGAATTAT
GGATAAAGAAAAAGGAGGAC

Downstream 100 bases:

>100_bases
AATTATGAGAAATGAAAATCGATTTCATGAAGTTCGATTTGTGATAATTACCGGTATGTCGGGAGCAGGTAAATCCATAG
TTATCCAGAGCTTTGAAGAT

Product: PHP domain protein

Products: NA

Alternate protein names: Hydrolase; DNA Polymerase X Family Protein; Phosphotransferase Domain-Containing Protein; Phosphoesterase; Phosphatase; Histidinol Phosphate Phosphatase HisJ Family; PHP Family Histidinol Phosphatase/Hydrolase; PHP Domain-Containing Protein; Biotin Synthetase; Family X DNA Polymerase IV; Histidinol Phosphatase/ Hydrolase; DNA Polymerase Beta

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MVNILSDYHIHTKYSHGKGTIKENVLAAREKGLKELGINDHGPASLGFGIDGENDLYYMKREINGLNKVFNDISIYLGLE
ANVIAEDGTLDINDKMLSYLDYLSVGLHLMIRPKTIKDFNGIIVRNWFNKLSRLGGISDNWSFLHNYRKDIRKKNTDMLC
RALDNYPIFMITHPGIHLDIDTDILAKYCGEKGVYLEINCAHLDKIKSYVWEASKASPHVKFILNSDAHVPNRVGELTAG
ANLCQELGLGKERVVNISSEQDKNLVMKNYVSRKE

Sequences:

>Translated_275_residues
MVNILSDYHIHTKYSHGKGTIKENVLAAREKGLKELGINDHGPASLGFGIDGENDLYYMKREINGLNKVFNDISIYLGLE
ANVIAEDGTLDINDKMLSYLDYLSVGLHLMIRPKTIKDFNGIIVRNWFNKLSRLGGISDNWSFLHNYRKDIRKKNTDMLC
RALDNYPIFMITHPGIHLDIDTDILAKYCGEKGVYLEINCAHLDKIKSYVWEASKASPHVKFILNSDAHVPNRVGELTAG
ANLCQELGLGKERVVNISSEQDKNLVMKNYVSRKE
>Mature_275_residues
MVNILSDYHIHTKYSHGKGTIKENVLAAREKGLKELGINDHGPASLGFGIDGENDLYYMKREINGLNKVFNDISIYLGLE
ANVIAEDGTLDINDKMLSYLDYLSVGLHLMIRPKTIKDFNGIIVRNWFNKLSRLGGISDNWSFLHNYRKDIRKKNTDMLC
RALDNYPIFMITHPGIHLDIDTDILAKYCGEKGVYLEINCAHLDKIKSYVWEASKASPHVKFILNSDAHVPNRVGELTAG
ANLCQELGLGKERVVNISSEQDKNLVMKNYVSRKE

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31156; Mature: 31156

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNILSDYHIHTKYSHGKGTIKENVLAAREKGLKELGINDHGPASLGFGIDGENDLYYMK
CCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCHHHCCCCCCCCCEECCCCCCCCCEEEHH
REINGLNKVFNDISIYLGLEANVIAEDGTLDINDKMLSYLDYLSVGLHLMIRPKTIKDFN
HHHHHHHHHHHHEEEEEECCEEEEECCCEEECHHHHHHHHHHHHHCEEEEECCCCCCCCC
GIIVRNWFNKLSRLGGISDNWSFLHNYRKDIRKKNTDMLCRALDNYPIFMITHPGIHLDI
CEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCEEEEE
DTDILAKYCGEKGVYLEINCAHLDKIKSYVWEASKASPHVKFILNSDAHVPNRVGELTAG
CHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHH
ANLCQELGLGKERVVNISSEQDKNLVMKNYVSRKE
HHHHHHHCCCHHHEEECCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MVNILSDYHIHTKYSHGKGTIKENVLAAREKGLKELGINDHGPASLGFGIDGENDLYYMK
CCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCHHHCCCCCCCCCEECCCCCCCCCEEEHH
REINGLNKVFNDISIYLGLEANVIAEDGTLDINDKMLSYLDYLSVGLHLMIRPKTIKDFN
HHHHHHHHHHHHEEEEEECCEEEEECCCEEECHHHHHHHHHHHHHCEEEEECCCCCCCCC
GIIVRNWFNKLSRLGGISDNWSFLHNYRKDIRKKNTDMLCRALDNYPIFMITHPGIHLDI
CEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCEEEEE
DTDILAKYCGEKGVYLEINCAHLDKIKSYVWEASKASPHVKFILNSDAHVPNRVGELTAG
CHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHH
ANLCQELGLGKERVVNISSEQDKNLVMKNYVSRKE
HHHHHHHCCCHHHEEECCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA