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The map label for this gene is rarA [H]

Identifier: 188586400

GI number: 188586400

Start: 1851650

End: 1852993

Strand: Reverse

Name: rarA [H]

Synonym: Nther_1785

Alternate gene names: 188586400

Gene position: 1852993-1851650 (Counterclockwise)

Preceding gene: 188586401

Following gene: 188586399

Centisome position: 58.54

GC content: 36.46

Gene sequence:

>1344_bases
ATGGATATGGATCTGTTTAATTATAATTTAGAAGAAAAAAAGTTTAATGACACTCCGCTGGCGGACAGGATGCGGCCTCG
TAGCCTTGACGACTTCGTGGGACAGGAACAAATCTTAGGAAAAGGCAAATTATTACGAAGGGCCATTGAAGCCGATCGAC
TTACTTCAATCGTACTTTATGGCCCTCCTGGTTCTGGAAAAACTACTATAGCTAAGATTATCGCCGAAAACACAGAAAAA
TATTTCTATCAATTGAATGCTGTCACTAGCGGTGTCAAGGATTTACGGGAAGTGGTGGAAAAATCTAAGGAGAATAGAAG
TTATTATAGTAAAGGTACAATTATGTTTATAGATGAAATTCATAGATTTAATAAGAGTCAACAAGATGCACTACTTCCAT
ATGTGGAAGATGGGACAATCACATTAATTGGAGCTACTACTGAAAATCCGTATTTTACAGTTAATAATCCTCTTCTCTCT
AGATCCCGAATATTTAAGCTAGAACAACTGGGGATTCAAGAAATTGAGACTTTACTACGTAGATCCTTGCAGGATGAAGA
GAAAGGTTTAGGTAATTATAATGTTGAAATAAATCAAGATGCATTGCAGCATCTGACTGATTGTTCTAATGGAGATATTC
GAATTGCATTAAATGCACTAGAATTGGCTGTATTAACTACTGTCCCCAATGAAAATGGGACGAGAATTATTACTAAAGAA
GTGGCTGAAGAATCAATCCAAAAAAAAGCTGTATATTATGATCGAGATGGGGACTATCACTATGATGTCATTTCTGCTTT
TATTAAATCTCTACGCGGTTCTGATCCAGACGCAGGTTTATACTGGTTAGCCAGGATGTTATCTGCAGGAGAAGATCCTT
TATTTATAGCCCGAAGAATGTTAATTTTTGCCAGTGAAGATATAGGTAATGCAGATCCTATGGCTTTACAGCTTGCATTG
TCAGTATATCAGTCAGTAGAAAGACTGGGCTTACCAGAAGGAAGGTTGACTTTGGCACAGGGTGTTACTTATTTAGCTTC
AGCTCCCAAAAGTAATAGTAGTTACAAAGGGATATTAAAAGCTATTTCAGAAGTTGAACAAGGAGGTCATGATCAAGTAC
CTCAACATTTAAAAGATTCACATTATCAAGGAGCAAAGGAACTTGGACATGGAAAGGGTTATCAATATCCTCATAAATAC
CCTGAAAATTTTGTTCATCAGTCATATTTACCTGAGGAATTTCAAGATAGAATATATTATCATCCAACGGAGAATGGTAA
AGAAAAAGAAATAAAACAACGTTTGAACAGGTTTTGGGATAAGCGTGGTGATGATGATGAGTAA

Upstream 100 bases:

>100_bases
CCAAACCAGCTCGATTGTCAGTTAAAGAAAATTCAGTTTGAATATGCTCTGTACAAAAAAGCGCGTGAACAGGAAGTAGA
TAAAGAAGGGGTAGTTCATC

Downstream 100 bases:

>100_bases
TAGAGTTTTAGTGGCAATGAGCGGTGGGGTAGATAGCTCAGTTGCTGCTTTAATGTTAAAAGAACAAGGTTATGAAGTGA
TCGGTGCTCATATGCGAATT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MDMDLFNYNLEEKKFNDTPLADRMRPRSLDDFVGQEQILGKGKLLRRAIEADRLTSIVLYGPPGSGKTTIAKIIAENTEK
YFYQLNAVTSGVKDLREVVEKSKENRSYYSKGTIMFIDEIHRFNKSQQDALLPYVEDGTITLIGATTENPYFTVNNPLLS
RSRIFKLEQLGIQEIETLLRRSLQDEEKGLGNYNVEINQDALQHLTDCSNGDIRIALNALELAVLTTVPNENGTRIITKE
VAEESIQKKAVYYDRDGDYHYDVISAFIKSLRGSDPDAGLYWLARMLSAGEDPLFIARRMLIFASEDIGNADPMALQLAL
SVYQSVERLGLPEGRLTLAQGVTYLASAPKSNSSYKGILKAISEVEQGGHDQVPQHLKDSHYQGAKELGHGKGYQYPHKY
PENFVHQSYLPEEFQDRIYYHPTENGKEKEIKQRLNRFWDKRGDDDE

Sequences:

>Translated_447_residues
MDMDLFNYNLEEKKFNDTPLADRMRPRSLDDFVGQEQILGKGKLLRRAIEADRLTSIVLYGPPGSGKTTIAKIIAENTEK
YFYQLNAVTSGVKDLREVVEKSKENRSYYSKGTIMFIDEIHRFNKSQQDALLPYVEDGTITLIGATTENPYFTVNNPLLS
RSRIFKLEQLGIQEIETLLRRSLQDEEKGLGNYNVEINQDALQHLTDCSNGDIRIALNALELAVLTTVPNENGTRIITKE
VAEESIQKKAVYYDRDGDYHYDVISAFIKSLRGSDPDAGLYWLARMLSAGEDPLFIARRMLIFASEDIGNADPMALQLAL
SVYQSVERLGLPEGRLTLAQGVTYLASAPKSNSSYKGILKAISEVEQGGHDQVPQHLKDSHYQGAKELGHGKGYQYPHKY
PENFVHQSYLPEEFQDRIYYHPTENGKEKEIKQRLNRFWDKRGDDDE
>Mature_447_residues
MDMDLFNYNLEEKKFNDTPLADRMRPRSLDDFVGQEQILGKGKLLRRAIEADRLTSIVLYGPPGSGKTTIAKIIAENTEK
YFYQLNAVTSGVKDLREVVEKSKENRSYYSKGTIMFIDEIHRFNKSQQDALLPYVEDGTITLIGATTENPYFTVNNPLLS
RSRIFKLEQLGIQEIETLLRRSLQDEEKGLGNYNVEINQDALQHLTDCSNGDIRIALNALELAVLTTVPNENGTRIITKE
VAEESIQKKAVYYDRDGDYHYDVISAFIKSLRGSDPDAGLYWLARMLSAGEDPLFIARRMLIFASEDIGNADPMALQLAL
SVYQSVERLGLPEGRLTLAQGVTYLASAPKSNSSYKGILKAISEVEQGGHDQVPQHLKDSHYQGAKELGHGKGYQYPHKY
PENFVHQSYLPEEFQDRIYYHPTENGKEKEIKQRLNRFWDKRGDDDE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=435, Percent_Identity=44.367816091954, Blast_Score=351, Evalue=7e-97,
Organism=Homo sapiens, GI18426904, Length=435, Percent_Identity=40, Blast_Score=298, Evalue=5e-81,
Organism=Homo sapiens, GI6677723, Length=216, Percent_Identity=26.8518518518519, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI4506491, Length=245, Percent_Identity=26.1224489795918, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI31881687, Length=245, Percent_Identity=26.1224489795918, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI194306571, Length=210, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI194306567, Length=210, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI1787119, Length=418, Percent_Identity=44.0191387559809, Blast_Score=384, Evalue=1e-108,
Organism=Escherichia coli, GI1788167, Length=224, Percent_Identity=28.125, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6324111, Length=432, Percent_Identity=39.3518518518519, Blast_Score=303, Evalue=3e-83,
Organism=Saccharomyces cerevisiae, GI6324039, Length=287, Percent_Identity=25.0871080139373, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 50834; Mature: 50834

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMDLFNYNLEEKKFNDTPLADRMRPRSLDDFVGQEQILGKGKLLRRAIEADRLTSIVLY
CCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHCCHHHHHCHHHHHHHHHHHHHHCEEEEE
GPPGSGKTTIAKIIAENTEKYFYQLNAVTSGVKDLREVVEKSKENRSYYSKGTIMFIDEI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEHHHH
HRFNKSQQDALLPYVEDGTITLIGATTENPYFTVNNPLLSRSRIFKLEQLGIQEIETLLR
HHHCCCCCCCCCCEECCCEEEEEEECCCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHH
RSLQDEEKGLGNYNVEINQDALQHLTDCSNGDIRIALNALELAVLTTVPNENGTRIITKE
HHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCEEEEEEEEEEEEEEECCCCCCCEEHHHH
VAEESIQKKAVYYDRDGDYHYDVISAFIKSLRGSDPDAGLYWLARMLSAGEDPLFIARRM
HHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
LIFASEDIGNADPMALQLALSVYQSVERLGLPEGRLTLAQGVTYLASAPKSNSSYKGILK
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCHHHHHHH
AISEVEQGGHDQVPQHLKDSHYQGAKELGHGKGYQYPHKYPENFVHQSYLPEEFQDRIYY
HHHHHHCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHCCEEE
HPTENGKEKEIKQRLNRFWDKRGDDDE
CCCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDMDLFNYNLEEKKFNDTPLADRMRPRSLDDFVGQEQILGKGKLLRRAIEADRLTSIVLY
CCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHCCHHHHHCHHHHHHHHHHHHHHCEEEEE
GPPGSGKTTIAKIIAENTEKYFYQLNAVTSGVKDLREVVEKSKENRSYYSKGTIMFIDEI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEHHHH
HRFNKSQQDALLPYVEDGTITLIGATTENPYFTVNNPLLSRSRIFKLEQLGIQEIETLLR
HHHCCCCCCCCCCEECCCEEEEEEECCCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHH
RSLQDEEKGLGNYNVEINQDALQHLTDCSNGDIRIALNALELAVLTTVPNENGTRIITKE
HHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCEEEEEEEEEEEEEEECCCCCCCEEHHHH
VAEESIQKKAVYYDRDGDYHYDVISAFIKSLRGSDPDAGLYWLARMLSAGEDPLFIARRM
HHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
LIFASEDIGNADPMALQLALSVYQSVERLGLPEGRLTLAQGVTYLASAPKSNSSYKGILK
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCHHHHHHH
AISEVEQGGHDQVPQHLKDSHYQGAKELGHGKGYQYPHKYPENFVHQSYLPEEFQDRIYY
HHHHHHCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHCCEEE
HPTENGKEKEIKQRLNRFWDKRGDDDE
CCCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]