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The map label for this gene is yccH [H]

Identifier: 188586187

GI number: 188586187

Start: 1650071

End: 1650793

Strand: Reverse

Name: yccH [H]

Synonym: Nther_1569

Alternate gene names: 188586187

Gene position: 1650793-1650071 (Counterclockwise)

Preceding gene: 188586188

Following gene: 188586186

Centisome position: 52.15

GC content: 28.35

Gene sequence:

>723_bases
TTGTTAACAATGATTAATGTATTAATTTGTGATGATGATTTATACACATCAAAAGTATTAAAAAAAGTTATTGAGGAAAA
TGATGAAGTCAAAGAAATATATTTAGCTGAAAACGGAGAAGAGGCAGTAGATGCTGTTAAAAACAACGATATAGACCTTG
CCTTTATGGACATAGACATGCCAAAGTTAGATGGATTAGAAGCTGCTAAAATGATGATAAGTTTAGATAGTGATTTAAAG
GTAGTGTTTATTACCGCTTTTCCGGAATATGCATGTGACTCCTATGATCTTAGGGCCTTGGACTATATATTAAAACCTAT
AGATTTTCACAGGGTTAATGAAAATATTGAGCGGCTAATACAACAATCTCATGGAGAAAAATTTCATGATTCGTTAAAGG
AAAATAATATCTTGATGATTAAGGACAAACAAGAATATTATTTCATAAAAATGGAAGATATAAATTACATAGAAAAACAA
GACAAACAGTTAATAATTCATACTAAAGATAAAGAATATTCAACTCGAATGGGTTTAAATGAAATCGAAGAAAAATTAAA
CCAGAATTTTTTCCGAGCCCATAAATCTTATATAGTAAATCTGAAAAATATTGAAAAAATTGAACCTTATGGTGATTCGT
CGTATATTATCTATTTTGAAAACACTGATAAAGTTAAGAATGCACTGATAACCAAAAACAATATTCACATATTGAGAGAA
TGA

Upstream 100 bases:

>100_bases
TTGATTCTTATAATGGTAAAATAGATGTGTTTAAAGAAAACGGCAATATTACATTTCTCGTGGAGTTAATGGAATAAAAG
ATCTAAACAGAAGAGTGGTG

Downstream 100 bases:

>100_bases
TCTGCCAGAAAAATGACTTGGCAGATTTTTTTCTTAAAAATCTCTTATAAAGGCATGAATTTTCCATTTGACGGAATATA
AAATATTCCAAAAAAATTAA

Product: two component transcriptional regulator, LytTR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MLTMINVLICDDDLYTSKVLKKVIEENDEVKEIYLAENGEEAVDAVKNNDIDLAFMDIDMPKLDGLEAAKMMISLDSDLK
VVFITAFPEYACDSYDLRALDYILKPIDFHRVNENIERLIQQSHGEKFHDSLKENNILMIKDKQEYYFIKMEDINYIEKQ
DKQLIIHTKDKEYSTRMGLNEIEEKLNQNFFRAHKSYIVNLKNIEKIEPYGDSSYIIYFENTDKVKNALITKNNIHILRE

Sequences:

>Translated_240_residues
MLTMINVLICDDDLYTSKVLKKVIEENDEVKEIYLAENGEEAVDAVKNNDIDLAFMDIDMPKLDGLEAAKMMISLDSDLK
VVFITAFPEYACDSYDLRALDYILKPIDFHRVNENIERLIQQSHGEKFHDSLKENNILMIKDKQEYYFIKMEDINYIEKQ
DKQLIIHTKDKEYSTRMGLNEIEEKLNQNFFRAHKSYIVNLKNIEKIEPYGDSSYIIYFENTDKVKNALITKNNIHILRE
>Mature_240_residues
MLTMINVLICDDDLYTSKVLKKVIEENDEVKEIYLAENGEEAVDAVKNNDIDLAFMDIDMPKLDGLEAAKMMISLDSDLK
VVFITAFPEYACDSYDLRALDYILKPIDFHRVNENIERLIQQSHGEKFHDSLKENNILMIKDKQEYYFIKMEDINYIEKQ
DKQLIIHTKDKEYSTRMGLNEIEEKLNQNFFRAHKSYIVNLKNIEKIEPYGDSSYIIYFENTDKVKNALITKNNIHILRE

Specific function: Could be member of the two-component regulatory system yccG/yccH [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=225, Percent_Identity=28.4444444444444, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI87082052, Length=211, Percent_Identity=29.8578199052133, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1790437, Length=122, Percent_Identity=27.8688524590164, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788550, Length=123, Percent_Identity=31.7073170731707, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28281; Mature: 28281

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTMINVLICDDDLYTSKVLKKVIEENDEVKEIYLAENGEEAVDAVKNNDIDLAFMDIDM
CEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCEEEEEECCC
PKLDGLEAAKMMISLDSDLKVVFITAFPEYACDSYDLRALDYILKPIDFHRVNENIERLI
CCCCCHHHHHEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
QQSHGEKFHDSLKENNILMIKDKQEYYFIKMEDINYIEKQDKQLIIHTKDKEYSTRMGLN
HHHCCHHHHHHHCCCCEEEEEECCCEEEEEECCCCHHHCCCCEEEEEECCCCHHHHCCHH
EIEEKLNQNFFRAHKSYIVNLKNIEKIEPYGDSSYIIYFENTDKVKNALITKNNIHILRE
HHHHHHHHHHHHHHHHHEEECCCCCEECCCCCCEEEEEECCCHHHHHHEEECCCEEEEEC
>Mature Secondary Structure
MLTMINVLICDDDLYTSKVLKKVIEENDEVKEIYLAENGEEAVDAVKNNDIDLAFMDIDM
CEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCEEEEEECCC
PKLDGLEAAKMMISLDSDLKVVFITAFPEYACDSYDLRALDYILKPIDFHRVNENIERLI
CCCCCHHHHHEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
QQSHGEKFHDSLKENNILMIKDKQEYYFIKMEDINYIEKQDKQLIIHTKDKEYSTRMGLN
HHHCCHHHHHHHCCCCEEEEEECCCEEEEEECCCCHHHCCCCEEEEEECCCCHHHHCCHH
EIEEKLNQNFFRAHKSYIVNLKNIEKIEPYGDSSYIIYFENTDKVKNALITKNNIHILRE
HHHHHHHHHHHHHHHHHEEECCCCCEECCCCCCEEEEEECCCHHHHHHEEECCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9106203; 9274031; 9384377 [H]