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The map label for this gene is whiG [H]

Identifier: 188586048

GI number: 188586048

Start: 1491624

End: 1492376

Strand: Direct

Name: whiG [H]

Synonym: Nther_1422

Alternate gene names: 188586048

Gene position: 1491624-1492376 (Clockwise)

Preceding gene: 188586047

Following gene: 188586049

Centisome position: 47.12

GC content: 32.93

Gene sequence:

>753_bases
GTGAGTCTTAACTTGATAACCAGCTATCAAGATTCCGGTGATCGCCAGCAACTTGAGAAATTAATATCAGAATATAGTTA
TTTGGTTAAAAAACAGGTTGATAAGGTGAACTATCCGTCAATTTCAGGCTTGAATAGAGATGACTTAATATCTTTTGGTG
TAATTGGTTTGATAGATGCTATCAAGAAGTTTGACATTAATAGAAATGTTCCCTTTGAGGCCTATGCAAATATTAGAATT
AGAGGTGCAATTCTAGATGGGTTGAGAAAGTTTGATTTTGTACCTCGAAATTTAAGGGAAGAAATGAAAACTTTACACAG
TGAATATAGAAAGCTTGAGCAAAAATTAGGTAGAACACCTACTAATAATGAATTGGCTTATCAAATGTCAATTAGCGAAG
CAGAACTTGATAAATTATGGCAAGCAACAAATTGTGTGATTCCTAGCTATCTAAGCGACTACATAACTGCTGAAGAAGGT
GAATTAACCTTAGAAGATATTTATCCGGACAGTAACAGTCCTGATCCTCAAAGTAGAATTGATGAAAAAACAACAAAACA
AGAATTAGGACAGGCCATAGACACACTGCCGCAAAAAGAGAAATTGGTGTTATCGTTATATTACTATGAAGAATTGACAT
TAAAAGAAATAGCAAAAATATTAGAACTTACAGAATCTAGAATTAGTCAATTACATTCTAAAGCTGTATTGAGACTTAGA
GGAAAGCTAGCTAAAAAGAAACTTGACTTATAA

Upstream 100 bases:

>100_bases
AAGATGTAGGAGGAGATTACGGCCGGACCATTGACCTTTTCTGTGAAACTGGAAAACTGCAAATCAAAACAATAAATCGT
GGAGTTAAAGAGGTGTAACA

Downstream 100 bases:

>100_bases
TTACCCGTGTTTATTAAGGATGGAGTGATTTATAATGGCAGAACTACCCCAAAGGTTTTCCGGTGAAAACTTACAAGAAG
TTTTAGCGGAAGCTGCTGAA

Product: RNA polymerase, sigma 28 subunit, FliA/WhiG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSLNLITSYQDSGDRQQLEKLISEYSYLVKKQVDKVNYPSISGLNRDDLISFGVIGLIDAIKKFDINRNVPFEAYANIRI
RGAILDGLRKFDFVPRNLREEMKTLHSEYRKLEQKLGRTPTNNELAYQMSISEAELDKLWQATNCVIPSYLSDYITAEEG
ELTLEDIYPDSNSPDPQSRIDEKTTKQELGQAIDTLPQKEKLVLSLYYYEELTLKEIAKILELTESRISQLHSKAVLRLR
GKLAKKKLDL

Sequences:

>Translated_250_residues
MSLNLITSYQDSGDRQQLEKLISEYSYLVKKQVDKVNYPSISGLNRDDLISFGVIGLIDAIKKFDINRNVPFEAYANIRI
RGAILDGLRKFDFVPRNLREEMKTLHSEYRKLEQKLGRTPTNNELAYQMSISEAELDKLWQATNCVIPSYLSDYITAEEG
ELTLEDIYPDSNSPDPQSRIDEKTTKQELGQAIDTLPQKEKLVLSLYYYEELTLKEIAKILELTESRISQLHSKAVLRLR
GKLAKKKLDL
>Mature_249_residues
SLNLITSYQDSGDRQQLEKLISEYSYLVKKQVDKVNYPSISGLNRDDLISFGVIGLIDAIKKFDINRNVPFEAYANIRIR
GAILDGLRKFDFVPRNLREEMKTLHSEYRKLEQKLGRTPTNNELAYQMSISEAELDKLWQATNCVIPSYLSDYITAEEGE
LTLEDIYPDSNSPDPQSRIDEKTTKQELGQAIDTLPQKEKLVLSLYYYEELTLKEIAKILELTESRISQLHSKAVLRLRG
KLAKKKLDL

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=226, Percent_Identity=39.3805309734513, Blast_Score=151, Evalue=3e-38,
Organism=Escherichia coli, GI1789448, Length=216, Percent_Identity=28.7037037037037, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789098, Length=216, Percent_Identity=28.7037037037037, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 28797; Mature: 28666

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS00715 SIGMA70_1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLNLITSYQDSGDRQQLEKLISEYSYLVKKQVDKVNYPSISGLNRDDLISFGVIGLIDA
CCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
IKKFDINRNVPFEAYANIRIRGAILDGLRKFDFVPRNLREEMKTLHSEYRKLEQKLGRTP
HHHHCCCCCCCHHHHHCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
TNNELAYQMSISEAELDKLWQATNCVIPSYLSDYITAEEGELTLEDIYPDSNSPDPQSRI
CCCCEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHH
DEKTTKQELGQAIDTLPQKEKLVLSLYYYEELTLKEIAKILELTESRISQLHSKAVLRLR
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GKLAKKKLDL
HHHHHHHCCC
>Mature Secondary Structure 
SLNLITSYQDSGDRQQLEKLISEYSYLVKKQVDKVNYPSISGLNRDDLISFGVIGLIDA
CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
IKKFDINRNVPFEAYANIRIRGAILDGLRKFDFVPRNLREEMKTLHSEYRKLEQKLGRTP
HHHHCCCCCCCHHHHHCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
TNNELAYQMSISEAELDKLWQATNCVIPSYLSDYITAEEGELTLEDIYPDSNSPDPQSRI
CCCCEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHH
DEKTTKQELGQAIDTLPQKEKLVLSLYYYEELTLKEIAKILELTESRISQLHSKAVLRLR
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GKLAKKKLDL
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]