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The map label for this gene is fliR [H]

Identifier: 188586037

GI number: 188586037

Start: 1479738

End: 1480511

Strand: Direct

Name: fliR [H]

Synonym: Nther_1411

Alternate gene names: 188586037

Gene position: 1479738-1480511 (Clockwise)

Preceding gene: 188586036

Following gene: 188586038

Centisome position: 46.74

GC content: 32.95

Gene sequence:

>774_bases
TTGGATCTGACAACGTTGTTGCTAGAACAAGGCGTTTTATTCATATTGTTATTAACTAGAATATCTGGCATGATAATGAC
AGCACCAATTTTTGGAAGTAATTATATGCCCAATCAAATTAAAATAGCCTTTAGTTTAATATTGACACTGGTTTTTTTAC
CTGTTTTATCTCCTGAAGGTTTATCTGATTATCATATCATGAATGTTATATTATTTGCTTTTATGGAGTTAATGGTCGGA
ATAGCAATAGGTATGATCGCCAATTTGGTATTTTCTTCAATACAAATAGCTGGACAATTAATTGATGTACAAATGGGATT
TGCTATGGCTAGGGTGATGGACCCCCAGTACGAAACTCAAGTACCTTTAATAGGTCAATTTAAATATATTTTAGCTATCA
TGATTTTTTTAGTTATAAATGGTCATCACTTATTAATTAGATCAGTTTATGAAAGTTATCAATTGCTACCTATTGGCAAT
ATATTTGATTTAGGTGCAGGGGGAGTAGCTCTTAATGAACTGTTCTCCACAGTGTTTGTTTTGGCTATTCAGGTGAGTGC
TCCCGCTCTTGGTACTTTATTTTTGACAAATATAGCTTTGGGGGTTTTGGCTAGAACTGTACCCCAAATGAATGTATTTA
TTATTGGGTTTCCTGTGAAAATTTTTGTAGGATTTCTGTCCCTGGTATTATTAATGCCTACTTATACTTTGGTTTTGGGA
AACTTATTTCAGCACATTTGGGATGGTTTATATAACTTCTTACAAGCTTTATAG

Upstream 100 bases:

>100_bases
TGGTCCCTGGATGTATACTCTGTTAACTGAATTTGCAATCAATATATTTAGTAATATAAACCAGTTCATTAATTAACTAG
AAGGATGGGGGTCAGGGGAC

Downstream 100 bases:

>100_bases
TTTTTGATCGGTATTTTAATCCGTTCTATTAAATTTACAGTTATCAACAAGAATATAGCCACATCAAAATAAAAATTTTA
AAGTATCATTTATGGGGGAG

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MDLTTLLLEQGVLFILLLTRISGMIMTAPIFGSNYMPNQIKIAFSLILTLVFLPVLSPEGLSDYHIMNVILFAFMELMVG
IAIGMIANLVFSSIQIAGQLIDVQMGFAMARVMDPQYETQVPLIGQFKYILAIMIFLVINGHHLLIRSVYESYQLLPIGN
IFDLGAGGVALNELFSTVFVLAIQVSAPALGTLFLTNIALGVLARTVPQMNVFIIGFPVKIFVGFLSLVLLMPTYTLVLG
NLFQHIWDGLYNFLQAL

Sequences:

>Translated_257_residues
MDLTTLLLEQGVLFILLLTRISGMIMTAPIFGSNYMPNQIKIAFSLILTLVFLPVLSPEGLSDYHIMNVILFAFMELMVG
IAIGMIANLVFSSIQIAGQLIDVQMGFAMARVMDPQYETQVPLIGQFKYILAIMIFLVINGHHLLIRSVYESYQLLPIGN
IFDLGAGGVALNELFSTVFVLAIQVSAPALGTLFLTNIALGVLARTVPQMNVFIIGFPVKIFVGFLSLVLLMPTYTLVLG
NLFQHIWDGLYNFLQAL
>Mature_257_residues
MDLTTLLLEQGVLFILLLTRISGMIMTAPIFGSNYMPNQIKIAFSLILTLVFLPVLSPEGLSDYHIMNVILFAFMELMVG
IAIGMIANLVFSSIQIAGQLIDVQMGFAMARVMDPQYETQVPLIGQFKYILAIMIFLVINGHHLLIRSVYESYQLLPIGN
IFDLGAGGVALNELFSTVFVLAIQVSAPALGTLFLTNIALGVLARTVPQMNVFIIGFPVKIFVGFLSLVLLMPTYTLVLG
NLFQHIWDGLYNFLQAL

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=245, Percent_Identity=29.3877551020408, Blast_Score=103, Evalue=9e-24,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28352; Mature: 28352

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTTLLLEQGVLFILLLTRISGMIMTAPIFGSNYMPNQIKIAFSLILTLVFLPVLSPEG
CCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
LSDYHIMNVILFAFMELMVGIAIGMIANLVFSSIQIAGQLIDVQMGFAMARVMDPQYETQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCC
VPLIGQFKYILAIMIFLVINGHHLLIRSVYESYQLLPIGNIFDLGAGGVALNELFSTVFV
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHH
LAIQVSAPALGTLFLTNIALGVLARTVPQMNVFIIGFPVKIFVGFLSLVLLMPTYTLVLG
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
NLFQHIWDGLYNFLQAL
HHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDLTTLLLEQGVLFILLLTRISGMIMTAPIFGSNYMPNQIKIAFSLILTLVFLPVLSPEG
CCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
LSDYHIMNVILFAFMELMVGIAIGMIANLVFSSIQIAGQLIDVQMGFAMARVMDPQYETQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCC
VPLIGQFKYILAIMIFLVINGHHLLIRSVYESYQLLPIGNIFDLGAGGVALNELFSTVFV
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHH
LAIQVSAPALGTLFLTNIALGVLARTVPQMNVFIIGFPVKIFVGFLSLVLLMPTYTLVLG
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
NLFQHIWDGLYNFLQAL
HHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]