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The map label for this gene is ylmH [H]

Identifier: 188585944

GI number: 188585944

Start: 1389805

End: 1390602

Strand: Direct

Name: ylmH [H]

Synonym: Nther_1318

Alternate gene names: 188585944

Gene position: 1389805-1390602 (Clockwise)

Preceding gene: 188585943

Following gene: 188585945

Centisome position: 43.9

GC content: 36.47

Gene sequence:

>798_bases
ATGGGAACTGATAAACAAACAATTATGAATCACTATACTCATCCTCTGGAAAAGGAAACAGCCAGTAAAATATTCGATAA
AACAGACAAAGTGTTTAAGGAGCAAGGGATGGAAACTACAGATTTTTTTGATCCACATCAGTTAACTATTGCAGAAAAAG
TGATTAATACATTCTCTGATGTTTCAGCTTTATTTTATGGTGGTTTAGCTGATGCGGAAAGGAAAAAGGTTGGGATTTTC
CCTAAGGAATGGAATGTTACCCCTGATCAATTGGGGATCGAAGTACTAGAGCTTAGAGGAAATTTTAGATTTTCTAGTAT
TTCTCATAGAGATGTTTTAGGTGCTGTCATGGGTCTAGGTTTAAAGAGGGATAAAATTGGTGATATTCATGTCATGGAAG
AGGAACACAGGTTGATTATTGCTGTTGATGAAAGTATCTCCCAATTCATTACACAAAATTTAACACAAGTAAAAAATGTA
TCAGTATCAGCTGAAGCTATGGATCAGGAAGAAATCCCTCGCCAGCAAGAGTACACTCGTGAAATAAAGGGAACTGTATC
TAGTTTAAGATTAGATGCTGTTGCCAGTATAGGTTTCGGAGCTTCTAGAAGTAAAATGAGTCAGTTGATAAAAGCAGAGA
GGATAAAACTCAACTGGCAACCTACTAAAGATCCTAAGGCTACTGTTTCTGAAGGAGATGTGATTTCATTAAGAGGAAAA
GGAAGAGTGGAAATATCTGCAATCGGTGGTAAAAGCCGAAAGGGTAGGAGACATGTAACATTAAAGCGTTATAAATAA

Upstream 100 bases:

>100_bases
CACCGTTAATCGCCTTGTTATTATTGAATTTATTACAAAGATTGACATTTAGTTTACTTTGGATGCTGTAAAATTTGGAA
TTTAATATGGGGGGTAGTTG

Downstream 100 bases:

>100_bases
GTTTTAATTTCGGAGGTGGAATTATGACATTAACCCCCCTAGACATACACAATAAGGAATTTTCTCGTTCCTTTCGAGGA
TATAATCCTGATGAAGTTAA

Product: RNA-binding S4 domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MGTDKQTIMNHYTHPLEKETASKIFDKTDKVFKEQGMETTDFFDPHQLTIAEKVINTFSDVSALFYGGLADAERKKVGIF
PKEWNVTPDQLGIEVLELRGNFRFSSISHRDVLGAVMGLGLKRDKIGDIHVMEEEHRLIIAVDESISQFITQNLTQVKNV
SVSAEAMDQEEIPRQQEYTREIKGTVSSLRLDAVASIGFGASRSKMSQLIKAERIKLNWQPTKDPKATVSEGDVISLRGK
GRVEISAIGGKSRKGRRHVTLKRYK

Sequences:

>Translated_265_residues
MGTDKQTIMNHYTHPLEKETASKIFDKTDKVFKEQGMETTDFFDPHQLTIAEKVINTFSDVSALFYGGLADAERKKVGIF
PKEWNVTPDQLGIEVLELRGNFRFSSISHRDVLGAVMGLGLKRDKIGDIHVMEEEHRLIIAVDESISQFITQNLTQVKNV
SVSAEAMDQEEIPRQQEYTREIKGTVSSLRLDAVASIGFGASRSKMSQLIKAERIKLNWQPTKDPKATVSEGDVISLRGK
GRVEISAIGGKSRKGRRHVTLKRYK
>Mature_264_residues
GTDKQTIMNHYTHPLEKETASKIFDKTDKVFKEQGMETTDFFDPHQLTIAEKVINTFSDVSALFYGGLADAERKKVGIFP
KEWNVTPDQLGIEVLELRGNFRFSSISHRDVLGAVMGLGLKRDKIGDIHVMEEEHRLIIAVDESISQFITQNLTQVKNVS
VSAEAMDQEEIPRQQEYTREIKGTVSSLRLDAVASIGFGASRSKMSQLIKAERIKLNWQPTKDPKATVSEGDVISLRGKG
RVEISAIGGKSRKGRRHVTLKRYK

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29805; Mature: 29674

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTDKQTIMNHYTHPLEKETASKIFDKTDKVFKEQGMETTDFFDPHQLTIAEKVINTFSD
CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
VSALFYGGLADAERKKVGIFPKEWNVTPDQLGIEVLELRGNFRFSSISHRDVLGAVMGLG
HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCEEEEEECCCEEECCCCHHHHHHHHHHCC
LKRDKIGDIHVMEEEHRLIIAVDESISQFITQNLTQVKNVSVSAEAMDQEEIPRQQEYTR
CCCCCCCCEEEEECCCEEEEEECHHHHHHHHHHHHHHHCCCCCHHHCCHHHCCHHHHHHH
EIKGTVSSLRLDAVASIGFGASRSKMSQLIKAERIKLNWQPTKDPKATVSEGDVISLRGK
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCEEEECCC
GRVEISAIGGKSRKGRRHVTLKRYK
CEEEEEEECCCCCCCCEEEEEECCC
>Mature Secondary Structure 
GTDKQTIMNHYTHPLEKETASKIFDKTDKVFKEQGMETTDFFDPHQLTIAEKVINTFSD
CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
VSALFYGGLADAERKKVGIFPKEWNVTPDQLGIEVLELRGNFRFSSISHRDVLGAVMGLG
HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCEEEEEECCCEEECCCCHHHHHHHHHHCC
LKRDKIGDIHVMEEEHRLIIAVDESISQFITQNLTQVKNVSVSAEAMDQEEIPRQQEYTR
CCCCCCCCEEEEECCCEEEEEECHHHHHHHHHHHHHHHCCCCCHHHCCHHHCCHHHHHHH
EIKGTVSSLRLDAVASIGFGASRSKMSQLIKAERIKLNWQPTKDPKATVSEGDVISLRGK
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCEEEECCC
GRVEISAIGGKSRKGRRHVTLKRYK
CEEEEEEECCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]