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The map label for this gene is secD [H]

Identifier: 188585911

GI number: 188585911

Start: 1354228

End: 1355499

Strand: Direct

Name: secD [H]

Synonym: Nther_1285

Alternate gene names: 188585911

Gene position: 1354228-1355499 (Clockwise)

Preceding gene: 188585910

Following gene: 188585912

Centisome position: 42.78

GC content: 40.25

Gene sequence:

>1272_bases
ATGATCAGATGGAAATACGTGACGATTTTATTGGTAATACTGTTAGCTGTATTTGGACTGAGTTTTTATTCCTATCATTA
TGCAAGGGATAACATCAATCTAGGATTGGACTTGTCTGGAGGTATATATGTCCTCTTGGAAGCTGAAGATGTAGCAGGAG
AAGACGATGATGATGCCATTGAACGGGCTAAGACAATTATTAGGTCTAGAGTAGACGAGCTGGGCGTTTCGGAACCTGTA
GTTCAACAAGAAGGAGCTAATAGAATCAGAGTTGAATTAGCAGGTGCCGGGATTGATCGAGAGCGAGCAATGGATGTTAT
TGGCAGAACGGCACAACTAGAATTTTACGGCCCAGACCTATATCGACAAATTGATGTGACCGAAGATGAACAAATCGATT
TAGAGAATAAAGATGTTAGTCCTTTTGTAACTGGAGAACACGTTGAAGATGCTGGGGTTGGATATACTCCCCAAGGTCAG
CCTTATGTAAATGTCCATTTTACCTCCCAAGGCGCTGATCGAATGCGCGAAGCCACTCAAGAACACATGAGAGATCATTT
AGTGATAGTTTTAGATGGAGAGTTAGTTTCAGCCCCTGAGATTAGGGATGTTATTCACGATCAAGGTATGATTGATGGTA
TGGGTTCAGTAGAAGAAGCACAAAATGTCGCCTTGATGCTAAGGTCAGGGGCTCTACCTGTGTCTTTAACAGAGCTAGAA
ACCCGAACCTTGGGACCATCCTTAGGAGAAGAATTTCAAGAACAAAGTTTACAAGCTGGATTACTTGGACTTGCTTTGTT
AGTGATATTTATGCTGGGTGTTTACCGTTTGCCTGGATTAATGGCCAATATTGCTTTGGCTGTTTATTTGGTGATTATTT
TTAATGCTTTGATCTATCTAGATGCAACTTTTACGTTACCGGGGATTGCAGGTCTAATATTATCTCTGGGAATGGCTGTC
GATGCCAATGTGATTATATTTGAAAGAATTAAAGAAGAATTAAACTATGGTAAAACCCTTCGTGTCTCTGTAGAATCAGG
CTTCAAAAAAGGTATCAGAACTATTTTAGATGCCAATATCACAACCTTAATTGCTGCCGCTGTCCTATTCTACTTTGGGT
CCGGTCCCATCAGAGGTTTTGCCGTAACATTATCAACTGGAATAATTGCAAGTATGATTACTGCAGTCTTGTTTACGAGA
GTGATCTTAAAACTGCTGGTGTCTAGCAGATTAATTAGAGATACTAAGTATTTTGGAATACAAAGGGGTTAG

Upstream 100 bases:

>100_bases
TTGCAAAACTGATTGACACCGAAAATTGACCAAAGGTATAATTAGCTTTACAATCTTATTTAACTATCGTTGAATTTATA
ATAAGGAGAGTTAAAAGGCT

Downstream 100 bases:

>100_bases
AGCTATGGAAATAATAACAAATCGCAAAATTTGGTTTATAGTTTCATTGGTAATATTGGTGATTGGTTTAGGATCTCTGA
TGTTTAATGGATTAAATGTG

Product: protein-export membrane protein SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MIRWKYVTILLVILLAVFGLSFYSYHYARDNINLGLDLSGGIYVLLEAEDVAGEDDDDAIERAKTIIRSRVDELGVSEPV
VQQEGANRIRVELAGAGIDRERAMDVIGRTAQLEFYGPDLYRQIDVTEDEQIDLENKDVSPFVTGEHVEDAGVGYTPQGQ
PYVNVHFTSQGADRMREATQEHMRDHLVIVLDGELVSAPEIRDVIHDQGMIDGMGSVEEAQNVALMLRSGALPVSLTELE
TRTLGPSLGEEFQEQSLQAGLLGLALLVIFMLGVYRLPGLMANIALAVYLVIIFNALIYLDATFTLPGIAGLILSLGMAV
DANVIIFERIKEELNYGKTLRVSVESGFKKGIRTILDANITTLIAAAVLFYFGSGPIRGFAVTLSTGIIASMITAVLFTR
VILKLLVSSRLIRDTKYFGIQRG

Sequences:

>Translated_423_residues
MIRWKYVTILLVILLAVFGLSFYSYHYARDNINLGLDLSGGIYVLLEAEDVAGEDDDDAIERAKTIIRSRVDELGVSEPV
VQQEGANRIRVELAGAGIDRERAMDVIGRTAQLEFYGPDLYRQIDVTEDEQIDLENKDVSPFVTGEHVEDAGVGYTPQGQ
PYVNVHFTSQGADRMREATQEHMRDHLVIVLDGELVSAPEIRDVIHDQGMIDGMGSVEEAQNVALMLRSGALPVSLTELE
TRTLGPSLGEEFQEQSLQAGLLGLALLVIFMLGVYRLPGLMANIALAVYLVIIFNALIYLDATFTLPGIAGLILSLGMAV
DANVIIFERIKEELNYGKTLRVSVESGFKKGIRTILDANITTLIAAAVLFYFGSGPIRGFAVTLSTGIIASMITAVLFTR
VILKLLVSSRLIRDTKYFGIQRG
>Mature_423_residues
MIRWKYVTILLVILLAVFGLSFYSYHYARDNINLGLDLSGGIYVLLEAEDVAGEDDDDAIERAKTIIRSRVDELGVSEPV
VQQEGANRIRVELAGAGIDRERAMDVIGRTAQLEFYGPDLYRQIDVTEDEQIDLENKDVSPFVTGEHVEDAGVGYTPQGQ
PYVNVHFTSQGADRMREATQEHMRDHLVIVLDGELVSAPEIRDVIHDQGMIDGMGSVEEAQNVALMLRSGALPVSLTELE
TRTLGPSLGEEFQEQSLQAGLLGLALLVIFMLGVYRLPGLMANIALAVYLVIIFNALIYLDATFTLPGIAGLILSLGMAV
DANVIIFERIKEELNYGKTLRVSVESGFKKGIRTILDANITTLIAAAVLFYFGSGPIRGFAVTLSTGIIASMITAVLFTR
VILKLLVSSRLIRDTKYFGIQRG

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=398, Percent_Identity=35.678391959799, Blast_Score=223, Evalue=1e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 46429; Mature: 46429

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRWKYVTILLVILLAVFGLSFYSYHYARDNINLGLDLSGGIYVLLEAEDVAGEDDDDAI
CCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCEEEEEEEHHCCCCCCHHHH
ERAKTIIRSRVDELGVSEPVVQQEGANRIRVELAGAGIDRERAMDVIGRTAQLEFYGPDL
HHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCEEEEEECCHH
YRQIDVTEDEQIDLENKDVSPFVTGEHVEDAGVGYTPQGQPYVNVHFTSQGADRMREATQ
HEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH
EHMRDHLVIVLDGELVSAPEIRDVIHDQGMIDGMGSVEEAQNVALMLRSGALPVSLTELE
HHHHCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHEECCCCCEEHHHHH
TRTLGPSLGEEFQEQSLQAGLLGLALLVIFMLGVYRLPGLMANIALAVYLVIIFNALIYL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DATFTLPGIAGLILSLGMAVDANVIIFERIKEELNYGKTLRVSVESGFKKGIRTILDANI
CCHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCH
TTLIAAAVLFYFGSGPIRGFAVTLSTGIIASMITAVLFTRVILKLLVSSRLIRDTKYFGI
HHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QRG
CCC
>Mature Secondary Structure
MIRWKYVTILLVILLAVFGLSFYSYHYARDNINLGLDLSGGIYVLLEAEDVAGEDDDDAI
CCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCEEEEEEEHHCCCCCCHHHH
ERAKTIIRSRVDELGVSEPVVQQEGANRIRVELAGAGIDRERAMDVIGRTAQLEFYGPDL
HHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCEEEEEECCHH
YRQIDVTEDEQIDLENKDVSPFVTGEHVEDAGVGYTPQGQPYVNVHFTSQGADRMREATQ
HEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH
EHMRDHLVIVLDGELVSAPEIRDVIHDQGMIDGMGSVEEAQNVALMLRSGALPVSLTELE
HHHHCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHEECCCCCEEHHHHH
TRTLGPSLGEEFQEQSLQAGLLGLALLVIFMLGVYRLPGLMANIALAVYLVIIFNALIYL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DATFTLPGIAGLILSLGMAVDANVIIFERIKEELNYGKTLRVSVESGFKKGIRTILDANI
CCHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCH
TTLIAAAVLFYFGSGPIRGFAVTLSTGIIASMITAVLFTRVILKLLVSSRLIRDTKYFGI
HHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QRG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]