Click here to switch to the map view.

The map label for this gene is ybbM [C]

Identifier: 188585765

GI number: 188585765

Start: 1205244

End: 1206041

Strand: Reverse

Name: ybbM [C]

Synonym: Nther_1139

Alternate gene names: 188585765

Gene position: 1206041-1205244 (Counterclockwise)

Preceding gene: 188585766

Following gene: 188585762

Centisome position: 38.1

GC content: 31.45

Gene sequence:

>798_bases
ATGGAGGCTGGAGTAGTTGAATTAGGTTTTTATCAGATGTTATCAGCTTATATTTTTGTAATAATTCTGTTATTAATTGT
CAAAGTCAAGCAAATCCCTAGAGAAAAAGAAATCATCTTATCTACTATCAGAATGACAATCCAATTAATGCTTATGGGCT
ATGTATTAATTTTTATTTTTGATAATCAACATCCGTTACTGACACTATTTGTGATTTTAGTTATGGAAACCTTTGCTGTT
ATAAACATCTTTAGCAGAGCTAAGAAAAAATTGAGCTTATACTTTAAGAAAATTATAGCTTTTTCAATGGTTTTTGGCAC
TTTAATCACCTTATTCTATTTTATCTTTATAGTTATCAATGTCACCCCTTGGTATGATCCAAGATACTTTGTTACTATTG
CTGGCATGTTAATTGGTAATTCTATGACTGGTATTACCCTTGGCGTAGAACGTATGTCTGACGGAATGGAAACAGAAAAA
GAAACTGTCGAAGGGTATCTAATGCTAGGTGCAAGACCAAATGTTGCAGCAAAAAGAATCATTAATAATTCTTTTGAATC
TGCAATTATACCGACTATTAATAATATGATGGGTATGGGAATTATCTTTTTACCAGGTATGATGACCGGTCAAATTTTAT
CCGGAATTTCACCTTTGACAGCAATTTCATATCAAATTGCAATTATGTTAGGTATACTAGGAGGAGTTTCTCTAACAGTA
ATTACCTTTGTCCAACTGGGTTACAAAACCTTTTTCAACGAAAAAAATCAATTAATAAACGACACTGGTGATTATTAA

Upstream 100 bases:

>100_bases
TCATGGTGACTCATTCTAAAAAAATTGGTCAGAAACAATCCGATGTTTTGATAAACATAGATAATGGCAAAGCTGTCATT
AAAAAGGGGGGTAATCAAGA

Downstream 100 bases:

>100_bases
TTGGTTAATTCACCCTGATAAGTGTTATTTAATTTATTTACAATTTTTACAATAACCATAAAAGTGTAATCTATGGTCTG
AAATTTTAAAATTATGCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MEAGVVELGFYQMLSAYIFVIILLLIVKVKQIPREKEIILSTIRMTIQLMLMGYVLIFIFDNQHPLLTLFVILVMETFAV
INIFSRAKKKLSLYFKKIIAFSMVFGTLITLFYFIFIVINVTPWYDPRYFVTIAGMLIGNSMTGITLGVERMSDGMETEK
ETVEGYLMLGARPNVAAKRIINNSFESAIIPTINNMMGMGIIFLPGMMTGQILSGISPLTAISYQIAIMLGILGGVSLTV
ITFVQLGYKTFFNEKNQLINDTGDY

Sequences:

>Translated_265_residues
MEAGVVELGFYQMLSAYIFVIILLLIVKVKQIPREKEIILSTIRMTIQLMLMGYVLIFIFDNQHPLLTLFVILVMETFAV
INIFSRAKKKLSLYFKKIIAFSMVFGTLITLFYFIFIVINVTPWYDPRYFVTIAGMLIGNSMTGITLGVERMSDGMETEK
ETVEGYLMLGARPNVAAKRIINNSFESAIIPTINNMMGMGIIFLPGMMTGQILSGISPLTAISYQIAIMLGILGGVSLTV
ITFVQLGYKTFFNEKNQLINDTGDY
>Mature_265_residues
MEAGVVELGFYQMLSAYIFVIILLLIVKVKQIPREKEIILSTIRMTIQLMLMGYVLIFIFDNQHPLLTLFVILVMETFAV
INIFSRAKKKLSLYFKKIIAFSMVFGTLITLFYFIFIVINVTPWYDPRYFVTIAGMLIGNSMTGITLGVERMSDGMETEK
ETVEGYLMLGARPNVAAKRIINNSFESAIIPTINNMMGMGIIFLPGMMTGQILSGISPLTAISYQIAIMLGILGGVSLTV
ITFVQLGYKTFFNEKNQLINDTGDY

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=244, Percent_Identity=33.1967213114754, Blast_Score=132, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 29791; Mature: 29791

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.8 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.8 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHCCHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]