Click here to switch to the map view.

The map label for this gene is yhfW [H]

Identifier: 188585360

GI number: 188585360

Start: 751955

End: 753517

Strand: Direct

Name: yhfW [H]

Synonym: Nther_0727

Alternate gene names: 188585360

Gene position: 751955-753517 (Clockwise)

Preceding gene: 188585358

Following gene: 188585361

Centisome position: 23.75

GC content: 39.67

Gene sequence:

>1563_bases
TTGATTAAAGAATCATTTTACCAAAAATACGGATTTGGTAACCCACCCCAATCTTACTGGATTGCATCAACTCACAGTAC
CAATTATCCTGTTTTGGACAGGGATATAAAAGTAGATGTTGCTATTGTGGGTGGAGGCCTTGTAGGAATAACTGCTGCGT
ATCTTTTGAAGCAAGAAAATCTTAAAGTAGCAGTTATAGAGTCAGATAAAATTGCTGAAGGGACAACAGGCCATACTACA
GCCAAACTAACCTCCCAGCACAATTTAATATATGATAAACTGATTAATCACTTGGGTAAGGAAAAAGCAGAAATTTATGC
AGGGGCCAACGAATTTGCCATAGATTTTGTTGAAAATCTTATCAATGAAAAACAAATAGACTGTGACTTTTCCAGACAAC
CTGCCATTGTCTATACCCAATCTGATCAATATATTCAGAAAATCCAAAAAGAAGTTGAAGCAGCATCAAGCCTGGGAATA
GATGTCAAGTACCTAGATTCGTTACCTTTACCCTTTGAAGTAAAAGCTGCTGAACAGTTTGAAAACCAGGCCCAGTTTCA
TCCTAGAAAATTTTTATTGCCCCTGGCAGAAGAAGTGCATGGAAACGGAAGTTACATCTTTGAACAGACAAGGGCCGTGG
ACTTTCATGAGGATAAGCCGATTACAGTTATTTCAGAAAACGGATACAAGGTAACAGCTGATCATGTTATCATCGCTTCT
CATTTTCCGGCTTACGGAAGTGGTGGATATTACTTTGCACGGATGTATCCTGACCGATCCTATGCCCTGGGAATAAAAAC
TAAAGAAGAATTTCCAGGTGGAATGTACATTACAGCCGAAGACCCAGGGCGTTCTTTGCGCTTCACACCGGATAATAATG
ATCAAAATAATCAATTAGTTATAGTAGCAGGTGAACACCATAAAACGGGACAGGGTCCAAACACAAATCAGCACTATCAA
AACCTGATTAATTTTGCCAAGGAAACTTATACAGTGACAGATATTTTATACAGATGGTCCACCCAGGATTATACCACTTT
AGATGATGTGCCCTATGTGGGTAGAATAACTTCAAAAAGTCCTAATATCTACGTCGCTACAGGCTTTAGAAAATGGGGGA
TGACCAACAGTATAGTTTCAGCAATTTTGCTAAAGGATCTGATAATTAAAGGTGAGAGTCCCTGGGAACCTGTATATAAT
CCATCAAGATTTGAAACAGATCCCATGATTAAAAACTTTGTCAGTTCTAATATGGAAGTAGCTAAACATTTGATAGGAGA
TAAACTAAAGCCCGTACCCAGTGACTTTGATATAGAGCCCGGAGAAGCGAAAGTGATCAAATATCAAGGAGAAAAAATGG
GTGTTTATAAAGATGAAGGCGGTGAAATTCACGCTGTCAATATTACATGTACCCATATGGGATGTGATCTAATCTGGAAT
GCTGCCGAGCTTTCCTGGGATTGTCCCTGTCATGGCTCCAGGTTCACTTATAGAGGTGATATCATTGAAGGCCCCGCTCT
CAAAAGCCTCCAAACCCGTGACCCCTTGAGGTTCAATCCATAA

Upstream 100 bases:

>100_bases
ACATAAAATTTTAATTCTGATAAGTATAAAATACCATAAACAGAACACTGTATAAATGGGAATTATGGAATTTAGGAATT
TGATATTAGGAGGGATTTAT

Downstream 100 bases:

>100_bases
GGGAAAATATGATATAATCATACATAAATTACACTTAATTCCAAGCCAAAGCAGTGGTTTTTTGTGGGGTTCTTTGTGGG
ATTTTTGCTTTGTTTTTGCT

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MIKESFYQKYGFGNPPQSYWIASTHSTNYPVLDRDIKVDVAIVGGGLVGITAAYLLKQENLKVAVIESDKIAEGTTGHTT
AKLTSQHNLIYDKLINHLGKEKAEIYAGANEFAIDFVENLINEKQIDCDFSRQPAIVYTQSDQYIQKIQKEVEAASSLGI
DVKYLDSLPLPFEVKAAEQFENQAQFHPRKFLLPLAEEVHGNGSYIFEQTRAVDFHEDKPITVISENGYKVTADHVIIAS
HFPAYGSGGYYFARMYPDRSYALGIKTKEEFPGGMYITAEDPGRSLRFTPDNNDQNNQLVIVAGEHHKTGQGPNTNQHYQ
NLINFAKETYTVTDILYRWSTQDYTTLDDVPYVGRITSKSPNIYVATGFRKWGMTNSIVSAILLKDLIIKGESPWEPVYN
PSRFETDPMIKNFVSSNMEVAKHLIGDKLKPVPSDFDIEPGEAKVIKYQGEKMGVYKDEGGEIHAVNITCTHMGCDLIWN
AAELSWDCPCHGSRFTYRGDIIEGPALKSLQTRDPLRFNP

Sequences:

>Translated_520_residues
MIKESFYQKYGFGNPPQSYWIASTHSTNYPVLDRDIKVDVAIVGGGLVGITAAYLLKQENLKVAVIESDKIAEGTTGHTT
AKLTSQHNLIYDKLINHLGKEKAEIYAGANEFAIDFVENLINEKQIDCDFSRQPAIVYTQSDQYIQKIQKEVEAASSLGI
DVKYLDSLPLPFEVKAAEQFENQAQFHPRKFLLPLAEEVHGNGSYIFEQTRAVDFHEDKPITVISENGYKVTADHVIIAS
HFPAYGSGGYYFARMYPDRSYALGIKTKEEFPGGMYITAEDPGRSLRFTPDNNDQNNQLVIVAGEHHKTGQGPNTNQHYQ
NLINFAKETYTVTDILYRWSTQDYTTLDDVPYVGRITSKSPNIYVATGFRKWGMTNSIVSAILLKDLIIKGESPWEPVYN
PSRFETDPMIKNFVSSNMEVAKHLIGDKLKPVPSDFDIEPGEAKVIKYQGEKMGVYKDEGGEIHAVNITCTHMGCDLIWN
AAELSWDCPCHGSRFTYRGDIIEGPALKSLQTRDPLRFNP
>Mature_520_residues
MIKESFYQKYGFGNPPQSYWIASTHSTNYPVLDRDIKVDVAIVGGGLVGITAAYLLKQENLKVAVIESDKIAEGTTGHTT
AKLTSQHNLIYDKLINHLGKEKAEIYAGANEFAIDFVENLINEKQIDCDFSRQPAIVYTQSDQYIQKIQKEVEAASSLGI
DVKYLDSLPLPFEVKAAEQFENQAQFHPRKFLLPLAEEVHGNGSYIFEQTRAVDFHEDKPITVISENGYKVTADHVIIAS
HFPAYGSGGYYFARMYPDRSYALGIKTKEEFPGGMYITAEDPGRSLRFTPDNNDQNNQLVIVAGEHHKTGQGPNTNQHYQ
NLINFAKETYTVTDILYRWSTQDYTTLDDVPYVGRITSKSPNIYVATGFRKWGMTNSIVSAILLKDLIIKGESPWEPVYN
PSRFETDPMIKNFVSSNMEVAKHLIGDKLKPVPSDFDIEPGEAKVIKYQGEKMGVYKDEGGEIHAVNITCTHMGCDLIWN
AAELSWDCPCHGSRFTYRGDIIEGPALKSLQTRDPLRFNP

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1787559, Length=404, Percent_Identity=22.2772277227723, Blast_Score=83, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR017941
- InterPro:   IPR005805 [H]

Pfam domain/function: PF01266 DAO; PF00355 Rieske [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 58470; Mature: 58470

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKESFYQKYGFGNPPQSYWIASTHSTNYPVLDRDIKVDVAIVGGGLVGITAAYLLKQEN
CCCHHHHHHCCCCCCCCCEEEEECCCCCCCEECCCCEEEEEEECCCHHHHHHHHHEEECC
LKVAVIESDKIAEGTTGHTTAKLTSQHNLIYDKLINHLGKEKAEIYAGANEFAIDFVENL
CEEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH
INEKQIDCDFSRQPAIVYTQSDQYIQKIQKEVEAASSLGIDVKYLDSLPLPFEVKAAEQF
HCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEHHHHHH
ENQAQFHPRKFLLPLAEEVHGNGSYIFEQTRAVDFHEDKPITVISENGYKVTADHVIIAS
HHHHHCCCHHHHHHHHHHHCCCCCEEEEECEEECCCCCCCEEEEECCCEEEEECEEEEEE
HFPAYGSGGYYFARMYPDRSYALGIKTKEEFPGGMYITAEDPGRSLRFTPDNNDQNNQLV
CCCCCCCCCEEEEEECCCCCEEEECCCHHCCCCCEEEEECCCCCEEEECCCCCCCCCEEE
IVAGEHHKTGQGPNTNQHYQNLINFAKETYTVTDILYRWSTQDYTTLDDVPYVGRITSKS
EEECCCCCCCCCCCCHHHHHHHHHHHHHHEEEEHHHEECCCCCCCCCCCCCCCCEEECCC
PNIYVATGFRKWGMTNSIVSAILLKDLIIKGESPWEPVYNPSRFETDPMIKNFVSSNMEV
CCEEEEECCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHH
AKHLIGDKLKPVPSDFDIEPGEAKVIKYQGEKMGVYKDEGGEIHAVNITCTHMGCDLIWN
HHHHHCCCCCCCCCCCCCCCCCEEEEEEECCEECEEECCCCEEEEEEEEEEECCCEEEEE
AAELSWDCPCHGSRFTYRGDIIEGPALKSLQTRDPLRFNP
HHHCCCCCCCCCCEEEEECCEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIKESFYQKYGFGNPPQSYWIASTHSTNYPVLDRDIKVDVAIVGGGLVGITAAYLLKQEN
CCCHHHHHHCCCCCCCCCEEEEECCCCCCCEECCCCEEEEEEECCCHHHHHHHHHEEECC
LKVAVIESDKIAEGTTGHTTAKLTSQHNLIYDKLINHLGKEKAEIYAGANEFAIDFVENL
CEEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH
INEKQIDCDFSRQPAIVYTQSDQYIQKIQKEVEAASSLGIDVKYLDSLPLPFEVKAAEQF
HCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEHHHHHH
ENQAQFHPRKFLLPLAEEVHGNGSYIFEQTRAVDFHEDKPITVISENGYKVTADHVIIAS
HHHHHCCCHHHHHHHHHHHCCCCCEEEEECEEECCCCCCCEEEEECCCEEEEECEEEEEE
HFPAYGSGGYYFARMYPDRSYALGIKTKEEFPGGMYITAEDPGRSLRFTPDNNDQNNQLV
CCCCCCCCCEEEEEECCCCCEEEECCCHHCCCCCEEEEECCCCCEEEECCCCCCCCCEEE
IVAGEHHKTGQGPNTNQHYQNLINFAKETYTVTDILYRWSTQDYTTLDDVPYVGRITSKS
EEECCCCCCCCCCCCHHHHHHHHHHHHHHEEEEHHHEECCCCCCCCCCCCCCCCEEECCC
PNIYVATGFRKWGMTNSIVSAILLKDLIIKGESPWEPVYNPSRFETDPMIKNFVSSNMEV
CCEEEEECCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHH
AKHLIGDKLKPVPSDFDIEPGEAKVIKYQGEKMGVYKDEGGEIHAVNITCTHMGCDLIWN
HHHHHCCCCCCCCCCCCCCCCCEEEEEEECCEECEEECCCCEEEEEEEEEEECCCEEEEE
AAELSWDCPCHGSRFTYRGDIIEGPALKSLQTRDPLRFNP
HHHCCCCCCCCCCEEEEECCEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]