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The map label for this gene is sigI [H]

Identifier: 188585298

GI number: 188585298

Start: 683296

End: 684096

Strand: Direct

Name: sigI [H]

Synonym: Nther_0661

Alternate gene names: 188585298

Gene position: 683296-684096 (Clockwise)

Preceding gene: 188585296

Following gene: 188585299

Centisome position: 21.59

GC content: 32.46

Gene sequence:

>801_bases
ATGGAGAAAAAAGACATACAACTTTTACAAAAGGCTCAATCAGGTGATGAACAATCTAGAGAACTTTTAATAACATCATA
TACTTCATATATCCAGGAAATAGCTTCAGGGTATTGCAATCGTAAACTTGTATGGGAAAATGATGATGAATTAAGCATTG
CACTTTTGGCACTGAATGAAGCTATTGACAGTTATGATCTCAACTCAAATAAAAAGTTTAAGAACTATTTGAGAATGGTT
GTTAAAAGTCGCCTAGTTGATTATTTTAGAACTGAAAAACGGCATCACCATTTACCATTGAGTAATAATTTGGAAGAATC
CAACACTGAATTAGATGAACCTCCTGATAACAAAATTGAAGATGAAGCTGCCTGGAAGCAATACCATCAACAAAAAGAGT
TTCAAGAAAGAGTTGAAGAAATGAGTCAATTTGAATACGTATTACAAGAATATGGTTTATCTTTTCATGACCTCGAACAA
GCATCTCCTAAACATCAAAAAACTAGGGATAAACTGGTTGAAGTGGCGAAATTAATTGCAGAGCGAGAAGATTTATTAAA
ATACATAAAAAAGAAGAAAAAATTACCATTAAAAAAGCTCATTTTGGAAACGGGAAATAGCAAGAAAGTGTTAAAACGAG
GCAGAAAATATATTCTAGCTGTGACAATGATAATATCAGACGAGCGCTTTTCCTATTTGAGATCACTATTTTCATTACCC
AACAAATCATCTGAAAAAGCTCAAAAAGTAACTGAAAGTGGCTCTCCTTTGAAAGGGGATGAAGATAATGTCAAAAATTA
A

Upstream 100 bases:

>100_bases
TGCTTCATTGAGGGAGTTTTTTTCGGTATAATGAAATAATTGGATTTATGTACCCAAAAATTAAAATTCACTACGTATTG
ATTAGTAAAGGGTGAAGTAT

Downstream 100 bases:

>100_bases
GGCTGTAGTTATTAAAACAGAAAAAAATTATATGCATGTTGCTACTGAAGATCGCAGGTTCTTGCGGGTTCCTATTCCAG
AAAAGGGAGTAGCCAAAGGT

Product: putative RNA polymerase sigma factor SigI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MEKKDIQLLQKAQSGDEQSRELLITSYTSYIQEIASGYCNRKLVWENDDELSIALLALNEAIDSYDLNSNKKFKNYLRMV
VKSRLVDYFRTEKRHHHLPLSNNLEESNTELDEPPDNKIEDEAAWKQYHQQKEFQERVEEMSQFEYVLQEYGLSFHDLEQ
ASPKHQKTRDKLVEVAKLIAEREDLLKYIKKKKKLPLKKLILETGNSKKVLKRGRKYILAVTMIISDERFSYLRSLFSLP
NKSSEKAQKVTESGSPLKGDEDNVKN

Sequences:

>Translated_266_residues
MEKKDIQLLQKAQSGDEQSRELLITSYTSYIQEIASGYCNRKLVWENDDELSIALLALNEAIDSYDLNSNKKFKNYLRMV
VKSRLVDYFRTEKRHHHLPLSNNLEESNTELDEPPDNKIEDEAAWKQYHQQKEFQERVEEMSQFEYVLQEYGLSFHDLEQ
ASPKHQKTRDKLVEVAKLIAEREDLLKYIKKKKKLPLKKLILETGNSKKVLKRGRKYILAVTMIISDERFSYLRSLFSLP
NKSSEKAQKVTESGSPLKGDEDNVKN
>Mature_266_residues
MEKKDIQLLQKAQSGDEQSRELLITSYTSYIQEIASGYCNRKLVWENDDELSIALLALNEAIDSYDLNSNKKFKNYLRMV
VKSRLVDYFRTEKRHHHLPLSNNLEESNTELDEPPDNKIEDEAAWKQYHQQKEFQERVEEMSQFEYVLQEYGLSFHDLEQ
ASPKHQKTRDKLVEVAKLIAEREDLLKYIKKKKKLPLKKLILETGNSKKVLKRGRKYILAVTMIISDERFSYLRSLFSLP
NKSSEKAQKVTESGSPLKGDEDNVKN

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor plays a role in survival at low temperatures and could be involved in heat shock stress response, posi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014244
- InterPro:   IPR007627
- InterPro:   IPR013325 [H]

Pfam domain/function: PF04542 Sigma70_r2 [H]

EC number: NA

Molecular weight: Translated: 31206; Mature: 31206

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKDIQLLQKAQSGDEQSRELLITSYTSYIQEIASGYCNRKLVWENDDELSIALLALNE
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH
AIDSYDLNSNKKFKNYLRMVVKSRLVDYFRTEKRHHHLPLSNNLEESNTELDEPPDNKIE
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCH
DEAAWKQYHQQKEFQERVEEMSQFEYVLQEYGLSFHDLEQASPKHQKTRDKLVEVAKLIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHH
EREDLLKYIKKKKKLPLKKLILETGNSKKVLKRGRKYILAVTMIISDERFSYLRSLFSLP
HHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCC
NKSSEKAQKVTESGSPLKGDEDNVKN
CCCHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MEKKDIQLLQKAQSGDEQSRELLITSYTSYIQEIASGYCNRKLVWENDDELSIALLALNE
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH
AIDSYDLNSNKKFKNYLRMVVKSRLVDYFRTEKRHHHLPLSNNLEESNTELDEPPDNKIE
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCH
DEAAWKQYHQQKEFQERVEEMSQFEYVLQEYGLSFHDLEQASPKHQKTRDKLVEVAKLIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHH
EREDLLKYIKKKKKLPLKKLILETGNSKKVLKRGRKYILAVTMIISDERFSYLRSLFSLP
HHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCC
NKSSEKAQKVTESGSPLKGDEDNVKN
CCCHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]