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The map label for this gene is gerKC [H]

Identifier: 188585240

GI number: 188585240

Start: 626085

End: 627344

Strand: Reverse

Name: gerKC [H]

Synonym: Nther_0602

Alternate gene names: 188585240

Gene position: 627344-626085 (Counterclockwise)

Preceding gene: 188585241

Following gene: 188585239

Centisome position: 19.82

GC content: 37.86

Gene sequence:

>1260_bases
ATGAAACTTATAAACAATAATCTTTCTAAACAAAACAAAAAAAGCTCTAAACTAGTCATTTTGATGACAATAATAACTGT
AATTCCGCTCATTATTACAGGCTGTTGGGACAGGAATGAGCCAGAAAATAGAGCTTTTGTACTGGCTACTGGCTTTGATT
ACGACGAAGATCAAGATTTATATGAAATAACCGTCCAAGTAGCTGATCCCACAGGAATAGAAGGTGGTAATGGCCTGGGA
GGTGGTGGTGGAAATGACGGACCAAATGTAGGTGTTATGAGTGCCAAAGGAAGGACTCCTTATCATGCTGCTAAAAACTT
ACAATTACACATGACCAGGGAGCCGTTTTTTACACATAATAAATTATTAATAATCAGCGAAGATCTAGCACGGAGAGGAA
TTGGGCCTGTCCTAGATTATTTTGATAGAGAGAGAGAAACACGGTTAATAGCATTCCCTGCAATACTTCCGGAAGAACAT
GACATAACTCAATTATTTAGAACAGAGTTACCTTTTGAAACATATATAGGAGAAGGTATTGAAAGACAAATAATTCTTTC
GGTATTTGAACGGTCGGTTTTCCCCTCTAGATCTTTAATTGAGTCCTTTAATGTACTATCAATGCCCGGAAGAGAAACTG
TGATTGGAAAGATAGACTTAGGAGATCAGGAAGAGGAAGATATCCTTGGTGAAGAAGATGTAGTTAGAGGAACCACCCGA
CTAGAAGGTGGAGCCGTATTTAAAGGAGATCAGATGCAAGGATGGTTTGATATCGAAGAAACTAGAGGCTGGTTCTGGAT
TCACGGAAATGTAGATAATGCCATTAAGGTGATTAATTGTCCAGTTCATGATACCCATCCTATCAGTATTGAAATTTTCG
AATCCGAATCTCATGTTAATCCTATTATTACAGAAGAAGGAGATTATCAAATAGATATTAAAATTAGTGCAGATGGACGA
ATCCAGGATCAGACCTGTCCCCAAGGGTATGAAGAAGAGGGGGAATTAATAGATTCTATTGAAAACAGAACAGCCACAGC
TATTAAAAATGAAATAAAATCAAGTATTGAAAGGGCCCACCAACATGAATCCGATGTATTTGGTTTCGGTAATGTTTTCT
ATAGGAAAAAACCTGATGTTTGGGATGGAATAAAACACGAATGGCAAGAAGAGATATTTACAGATTTAGCTGTCAACGTA
GACGTAGAATTTGAATTAAGACGCGCGGGGCTTGTAACGGACCCTCTCATTAGAGATTAA

Upstream 100 bases:

>100_bases
CTTTCCATATGCTATGACAGGGTTTTTACCCTTTATATTGTTGTGGGTCAGTTACGTATTTAAAAAACTAACCAAATCGA
ACTGATTGGAGAACTGTAAA

Downstream 100 bases:

>100_bases
AATTAGACTTGTTCTACCATCAACTAAAAAGTCAAAATTTCAAGGCATCTAGATAGGAGCGAACAATAATGTTTCTTATT
TGGGCAATATTAATTTTAGT

Product: germination protein, Ger(x)C family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MKLINNNLSKQNKKSSKLVILMTIITVIPLIITGCWDRNEPENRAFVLATGFDYDEDQDLYEITVQVADPTGIEGGNGLG
GGGGNDGPNVGVMSAKGRTPYHAAKNLQLHMTREPFFTHNKLLIISEDLARRGIGPVLDYFDRERETRLIAFPAILPEEH
DITQLFRTELPFETYIGEGIERQIILSVFERSVFPSRSLIESFNVLSMPGRETVIGKIDLGDQEEEDILGEEDVVRGTTR
LEGGAVFKGDQMQGWFDIEETRGWFWIHGNVDNAIKVINCPVHDTHPISIEIFESESHVNPIITEEGDYQIDIKISADGR
IQDQTCPQGYEEEGELIDSIENRTATAIKNEIKSSIERAHQHESDVFGFGNVFYRKKPDVWDGIKHEWQEEIFTDLAVNV
DVEFELRRAGLVTDPLIRD

Sequences:

>Translated_419_residues
MKLINNNLSKQNKKSSKLVILMTIITVIPLIITGCWDRNEPENRAFVLATGFDYDEDQDLYEITVQVADPTGIEGGNGLG
GGGGNDGPNVGVMSAKGRTPYHAAKNLQLHMTREPFFTHNKLLIISEDLARRGIGPVLDYFDRERETRLIAFPAILPEEH
DITQLFRTELPFETYIGEGIERQIILSVFERSVFPSRSLIESFNVLSMPGRETVIGKIDLGDQEEEDILGEEDVVRGTTR
LEGGAVFKGDQMQGWFDIEETRGWFWIHGNVDNAIKVINCPVHDTHPISIEIFESESHVNPIITEEGDYQIDIKISADGR
IQDQTCPQGYEEEGELIDSIENRTATAIKNEIKSSIERAHQHESDVFGFGNVFYRKKPDVWDGIKHEWQEEIFTDLAVNV
DVEFELRRAGLVTDPLIRD
>Mature_419_residues
MKLINNNLSKQNKKSSKLVILMTIITVIPLIITGCWDRNEPENRAFVLATGFDYDEDQDLYEITVQVADPTGIEGGNGLG
GGGGNDGPNVGVMSAKGRTPYHAAKNLQLHMTREPFFTHNKLLIISEDLARRGIGPVLDYFDRERETRLIAFPAILPEEH
DITQLFRTELPFETYIGEGIERQIILSVFERSVFPSRSLIESFNVLSMPGRETVIGKIDLGDQEEEDILGEEDVVRGTTR
LEGGAVFKGDQMQGWFDIEETRGWFWIHGNVDNAIKVINCPVHDTHPISIEIFESESHVNPIITEEGDYQIDIKISADGR
IQDQTCPQGYEEEGELIDSIENRTATAIKNEIKSSIERAHQHESDVFGFGNVFYRKKPDVWDGIKHEWQEEIFTDLAVNV
DVEFELRRAGLVTDPLIRD

Specific function: Involved in the germination response to the combination of glucose, fructose, L-asparagine, and KCl [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008844 [H]

Pfam domain/function: PF05504 Spore_GerAC [H]

EC number: NA

Molecular weight: Translated: 47357; Mature: 47357

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLINNNLSKQNKKSSKLVILMTIITVIPLIITGCWDRNEPENRAFVLATGFDYDEDQDL
CCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCE
YEITVQVADPTGIEGGNGLGGGGGNDGPNVGVMSAKGRTPYHAAKNLQLHMTREPFFTHN
EEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCEEEEEECCCCCCCC
KLLIISEDLARRGIGPVLDYFDRERETRLIAFPAILPEEHDITQLFRTELPFETYIGEGI
EEEEEECHHHHCCCCHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHCCCH
ERQIILSVFERSVFPSRSLIESFNVLSMPGRETVIGKIDLGDQEEEDILGEEDVVRGTTR
HHHHHHHHHHHHCCCCHHHHHHCCEEECCCCCEEEEEECCCCCCHHHHCCCHHHHCCCEE
LEGGAVFKGDQMQGWFDIEETRGWFWIHGNVDNAIKVINCPVHDTHPISIEIFESESHVN
CCCCEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCCCCC
PIITEEGDYQIDIKISADGRIQDQTCPQGYEEEGELIDSIENRTATAIKNEIKSSIERAH
CEEECCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QHESDVFGFGNVFYRKKPDVWDGIKHEWQEEIFTDLAVNVDVEFELRRAGLVTDPLIRD
HCCCCCEECCCEEEECCCCHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MKLINNNLSKQNKKSSKLVILMTIITVIPLIITGCWDRNEPENRAFVLATGFDYDEDQDL
CCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCE
YEITVQVADPTGIEGGNGLGGGGGNDGPNVGVMSAKGRTPYHAAKNLQLHMTREPFFTHN
EEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCEEEEEECCCCCCCC
KLLIISEDLARRGIGPVLDYFDRERETRLIAFPAILPEEHDITQLFRTELPFETYIGEGI
EEEEEECHHHHCCCCHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHCCCH
ERQIILSVFERSVFPSRSLIESFNVLSMPGRETVIGKIDLGDQEEEDILGEEDVVRGTTR
HHHHHHHHHHHHCCCCHHHHHHCCEEECCCCCEEEEEECCCCCCHHHHCCCHHHHCCCEE
LEGGAVFKGDQMQGWFDIEETRGWFWIHGNVDNAIKVINCPVHDTHPISIEIFESESHVN
CCCCEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCCCCC
PIITEEGDYQIDIKISADGRIQDQTCPQGYEEEGELIDSIENRTATAIKNEIKSSIERAH
CEEECCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QHESDVFGFGNVFYRKKPDVWDGIKHEWQEEIFTDLAVNVDVEFELRRAGLVTDPLIRD
HCCCCCEECCCEEEECCCCHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]