| Definition | Natranaerobius thermophilus JW/NM-WN-LF, complete genome. |
|---|---|
| Accession | NC_010718 |
| Length | 3,165,557 |
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The map label for this gene is glgP [H]
Identifier: 188585197
GI number: 188585197
Start: 583528
End: 586014
Strand: Reverse
Name: glgP [H]
Synonym: Nther_0558
Alternate gene names: 188585197
Gene position: 586014-583528 (Counterclockwise)
Preceding gene: 188585198
Following gene: 188585196
Centisome position: 18.51
GC content: 35.67
Gene sequence:
>2487_bases ATGTTTGAATCAAGGGATAAATTCAAAAGAGAATTTAAGGAAAAATTACGTAAAGAACGAGGTAAAGCTATCGATAACGC AAGTTATTTGGATCTATATAAAACTCTGGGGAGAATGGTCAGAGAAGAAATAAATGATAATTGGGTAGCTACCAATAGTC AAATGGCTGACAAAGATAAAACCCAAGTTCACTATATCTCTATGGAATTTTTGATGGGAAGGATGTTAAAGCAAAATTTA TTAAGCATCGGTGCTCTTGACACCTGTCAAGAGTCTTTCAAAGAACTAGGAATAGATTTTGACAAAGTAGTTCAAAAGGA ACCAGACCCGGGATTAGGAAATGGTGGTTTAGGCAGATTGGCTGCAGATTTTCTCGACTCTCTGTCTGCCCTGTCTATTC CCGCTGTCGGCCATTGCCTTCGTTTCAAATATGGACTCTTTGACCAAAAAATTGTAAATGGATATCAAGTGGAATTACCA GGAAATTGGTTAAGAGAAGGTAATATTTGGGAAATAAGACGAGGTGACCACGCTCATGAAATCAAATTCGGAGGCAGAGT CACCTCCAGCCACCAAAACGGAAAATTAACTTTTCACCATGAAGATTACGAGTCCATTCTAGCTGTCCCTTATGATATAC CAATAATAGGTTATAAAAATCAAGTGGTTAATACCCTACGCCTTTGGAATACCGAACCCGCAGTCCAAGATTTTTACTTT AAACCTATTGATGGTAATAGCTGTCATCAGGTACTCAATTACAAAAAATCAATTGAATCTATTTCTGAATTTCTATATCC CGACGATAGCCACGAAGAAGGCAAAGTGCTCAGATTGAAACAACAATACTTTTTGGTCTCTGCCACCTTACAAAGTATTT TAGATAATTACAAACTAAAGCAAAAATCAATTCACGAATTACCCCAAGAGGTATCGGTTCATATTAACGATACTCATCCT GTCCTAGCTATACCAGAGTTAATGAGAATTTTAATGGACGAAGAGGGTTTGGATTGGGATACAGCTTTTGATTTAACTAA AAGAACAATCTCCTTTACTAATCATACTACTTTGCCAGAAGCTTTAGAATCATGGCCGGAAGAAACCATAAAATGCTTGC TACCTAGGATTCATATGATTGTTCACGAACTAAACGAACGCTTTTGCCAATCTTTATGGGATAAATACCCTGGAGATTGG AACAGAATCGAAAATATGGCTATTTTAGCCCATGGAAGAGTTAAAATGGCTCATTTGGCTTTAGCAGGAAGTCATACTGT CAATGGTGTGGCTGCTCTCCATACTAAACTGTTGAAAGAAAAACTATTTAAAAATTTCTATGAATACATGCCAGAAAAGT TCCAGAATAAAACAAATGGCATAACTCATAGACGCTGGTTAATGCTTTCTAACCCAAAAATAGCTGATACTGTGACAGAC TATATAGGAACTAATTGGATTACAGAACCAAAAGAATTAGAAGCTTTGGAAAAACACCAAGATGATGTCGGTCTACAGGA ACAATTAGTAAAAATTAGGCACGAGAACAAACAAGATCTGGCTGAAATTATTAAAAAAGAAAACGGGCTAACAGTTGATC CTAACAGTATTTTTGATGTGCAAGTCAAAAGATTCCATGCTTACAAGCGTCAATTAATGAATGCCCTTCATATACTAAAA ATTTACAATCAAATTAAAGAAAATCCCAATACTTTATTTTACCCAAGAACCTTTATCTTCTCTGGCAAGGCAGCTCCTGG GTATCACTATGCAAAAAAGATAATTAAACTTATCAACAGTATTGCTGAATTGGTGAACAACGATCCTCAAGTTAATGATC AGTTAAAAATTGTTTATCTAGAAAACTATCGGGTAGCCCTAGCCGAAAAAATCATCCCAGCTAGCGATGTTAATCAGCAA ATTTCTACTGCCAGTAAAGAAGCTTCAGGTACCGGTAATATGAAGTTTATGATGAACGGTTCTATTATAGTAGGAACCAA TGATGGAGCCAATATTGATATCCGGGAAGCGGTTGGAGATGATAATATTTTTGTTTTCGGACTAGAATCTGAAGAAGTAT TACAATATTATCACCATGGTGAGTACAGTCCTTTTGAAATCTATGAGAATGATTTAAAAATTAAAAGGATTTTAGATCAA TTAGTATCTGATTTTTTACCAGGGGAAGAAAATTTCCGAGATATCTACGATTCGCTATTGCTTGGAAATGATGAGTATTT TGTTTTAAAAGATTTAACATCATTAGAAGAAGCCCAACAAAAAGTTTCTCAAGCTTATCAAGATCGAAGTAAATGGTTTA AAAAAGCCATTGTTAACATTGCCAATTCAGGGCGGTTTTCAAGTGATTATACAATTAAATCCTACGCAGATAAAATCTGG CAAGCTACTCCTCTGAAAACAATGACTGTAAATCAAGCAGATTCATCTCAAATGCCGGCAGGTGAATATAGTGGAAACAC CTATTAA
Upstream 100 bases:
>100_bases ATTTTAGTTGGGAAAAATCTGCCTGTGAATATATCGAATTGTATCACAAACTTATACATAGAAACACAAACAGCACCAGA AAGGAGAGTTATCTTAAATA
Downstream 100 bases:
>100_bases GCTGTTTCATGACTCCCATAATCCTTTGTATCGAAAACCATTTGGAGCAGTCTCTATTAACAAAGAGATCTTATTAAGGC TTTATATTCGTACTACTAAC
Product: glycogen/starch/alpha-glucan phosphorylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 828; Mature: 828
Protein sequence:
>828_residues MFESRDKFKREFKEKLRKERGKAIDNASYLDLYKTLGRMVREEINDNWVATNSQMADKDKTQVHYISMEFLMGRMLKQNL LSIGALDTCQESFKELGIDFDKVVQKEPDPGLGNGGLGRLAADFLDSLSALSIPAVGHCLRFKYGLFDQKIVNGYQVELP GNWLREGNIWEIRRGDHAHEIKFGGRVTSSHQNGKLTFHHEDYESILAVPYDIPIIGYKNQVVNTLRLWNTEPAVQDFYF KPIDGNSCHQVLNYKKSIESISEFLYPDDSHEEGKVLRLKQQYFLVSATLQSILDNYKLKQKSIHELPQEVSVHINDTHP VLAIPELMRILMDEEGLDWDTAFDLTKRTISFTNHTTLPEALESWPEETIKCLLPRIHMIVHELNERFCQSLWDKYPGDW NRIENMAILAHGRVKMAHLALAGSHTVNGVAALHTKLLKEKLFKNFYEYMPEKFQNKTNGITHRRWLMLSNPKIADTVTD YIGTNWITEPKELEALEKHQDDVGLQEQLVKIRHENKQDLAEIIKKENGLTVDPNSIFDVQVKRFHAYKRQLMNALHILK IYNQIKENPNTLFYPRTFIFSGKAAPGYHYAKKIIKLINSIAELVNNDPQVNDQLKIVYLENYRVALAEKIIPASDVNQQ ISTASKEASGTGNMKFMMNGSIIVGTNDGANIDIREAVGDDNIFVFGLESEEVLQYYHHGEYSPFEIYENDLKIKRILDQ LVSDFLPGEENFRDIYDSLLLGNDEYFVLKDLTSLEEAQQKVSQAYQDRSKWFKKAIVNIANSGRFSSDYTIKSYADKIW QATPLKTMTVNQADSSQMPAGEYSGNTY
Sequences:
>Translated_828_residues MFESRDKFKREFKEKLRKERGKAIDNASYLDLYKTLGRMVREEINDNWVATNSQMADKDKTQVHYISMEFLMGRMLKQNL LSIGALDTCQESFKELGIDFDKVVQKEPDPGLGNGGLGRLAADFLDSLSALSIPAVGHCLRFKYGLFDQKIVNGYQVELP GNWLREGNIWEIRRGDHAHEIKFGGRVTSSHQNGKLTFHHEDYESILAVPYDIPIIGYKNQVVNTLRLWNTEPAVQDFYF KPIDGNSCHQVLNYKKSIESISEFLYPDDSHEEGKVLRLKQQYFLVSATLQSILDNYKLKQKSIHELPQEVSVHINDTHP VLAIPELMRILMDEEGLDWDTAFDLTKRTISFTNHTTLPEALESWPEETIKCLLPRIHMIVHELNERFCQSLWDKYPGDW NRIENMAILAHGRVKMAHLALAGSHTVNGVAALHTKLLKEKLFKNFYEYMPEKFQNKTNGITHRRWLMLSNPKIADTVTD YIGTNWITEPKELEALEKHQDDVGLQEQLVKIRHENKQDLAEIIKKENGLTVDPNSIFDVQVKRFHAYKRQLMNALHILK IYNQIKENPNTLFYPRTFIFSGKAAPGYHYAKKIIKLINSIAELVNNDPQVNDQLKIVYLENYRVALAEKIIPASDVNQQ ISTASKEASGTGNMKFMMNGSIIVGTNDGANIDIREAVGDDNIFVFGLESEEVLQYYHHGEYSPFEIYENDLKIKRILDQ LVSDFLPGEENFRDIYDSLLLGNDEYFVLKDLTSLEEAQQKVSQAYQDRSKWFKKAIVNIANSGRFSSDYTIKSYADKIW QATPLKTMTVNQADSSQMPAGEYSGNTY >Mature_828_residues MFESRDKFKREFKEKLRKERGKAIDNASYLDLYKTLGRMVREEINDNWVATNSQMADKDKTQVHYISMEFLMGRMLKQNL LSIGALDTCQESFKELGIDFDKVVQKEPDPGLGNGGLGRLAADFLDSLSALSIPAVGHCLRFKYGLFDQKIVNGYQVELP GNWLREGNIWEIRRGDHAHEIKFGGRVTSSHQNGKLTFHHEDYESILAVPYDIPIIGYKNQVVNTLRLWNTEPAVQDFYF KPIDGNSCHQVLNYKKSIESISEFLYPDDSHEEGKVLRLKQQYFLVSATLQSILDNYKLKQKSIHELPQEVSVHINDTHP VLAIPELMRILMDEEGLDWDTAFDLTKRTISFTNHTTLPEALESWPEETIKCLLPRIHMIVHELNERFCQSLWDKYPGDW NRIENMAILAHGRVKMAHLALAGSHTVNGVAALHTKLLKEKLFKNFYEYMPEKFQNKTNGITHRRWLMLSNPKIADTVTD YIGTNWITEPKELEALEKHQDDVGLQEQLVKIRHENKQDLAEIIKKENGLTVDPNSIFDVQVKRFHAYKRQLMNALHILK IYNQIKENPNTLFYPRTFIFSGKAAPGYHYAKKIIKLINSIAELVNNDPQVNDQLKIVYLENYRVALAEKIIPASDVNQQ ISTASKEASGTGNMKFMMNGSIIVGTNDGANIDIREAVGDDNIFVFGLESEEVLQYYHHGEYSPFEIYENDLKIKRILDQ LVSDFLPGEENFRDIYDSLLLGNDEYFVLKDLTSLEEAQQKVSQAYQDRSKWFKKAIVNIANSGRFSSDYTIKSYADKIW QATPLKTMTVNQADSSQMPAGEYSGNTY
Specific function: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties [
COG id: COG0058
COG function: function code G; Glucan phosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycogen phosphorylase family [H]
Homologues:
Organism=Homo sapiens, GI5032009, Length=815, Percent_Identity=44.0490797546012, Blast_Score=699, Evalue=0.0, Organism=Homo sapiens, GI21361370, Length=816, Percent_Identity=44.7303921568627, Blast_Score=684, Evalue=0.0, Organism=Homo sapiens, GI71037379, Length=816, Percent_Identity=43.9950980392157, Blast_Score=669, Evalue=0.0, Organism=Homo sapiens, GI255653002, Length=698, Percent_Identity=45.2722063037249, Blast_Score=625, Evalue=1e-179, Organism=Homo sapiens, GI257900462, Length=685, Percent_Identity=44.963503649635, Blast_Score=620, Evalue=1e-177, Organism=Escherichia coli, GI2367228, Length=772, Percent_Identity=43.9119170984456, Blast_Score=651, Evalue=0.0, Organism=Escherichia coli, GI48994936, Length=773, Percent_Identity=41.0090556274256, Blast_Score=608, Evalue=1e-175, Organism=Caenorhabditis elegans, GI17564550, Length=813, Percent_Identity=45.1414514145141, Blast_Score=711, Evalue=0.0, Organism=Caenorhabditis elegans, GI32566204, Length=813, Percent_Identity=45.1414514145141, Blast_Score=711, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6325418, Length=846, Percent_Identity=38.8888888888889, Blast_Score=560, Evalue=1e-160, Organism=Drosophila melanogaster, GI78706832, Length=817, Percent_Identity=45.6548347613219, Blast_Score=708, Evalue=0.0, Organism=Drosophila melanogaster, GI24581010, Length=817, Percent_Identity=45.6548347613219, Blast_Score=708, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011833 - InterPro: IPR000811 [H]
Pfam domain/function: PF00343 Phosphorylase [H]
EC number: =2.4.1.1 [H]
Molecular weight: Translated: 95253; Mature: 95253
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: PS00102 PHOSPHORYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFESRDKFKREFKEKLRKERGKAIDNASYLDLYKTLGRMVREEINDNWVATNSQMADKDK CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCC TQVHYISMEFLMGRMLKQNLLSIGALDTCQESFKELGIDFDKVVQKEPDPGLGNGGLGRL CEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHH AADFLDSLSALSIPAVGHCLRFKYGLFDQKIVNGYQVELPGNWLREGNIWEIRRGDHAHE HHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHCCCEEEECCCCCCCCCCEEEECCCCCCCE IKFGGRVTSSHQNGKLTFHHEDYESILAVPYDIPIIGYKNQVVNTLRLWNTEPAVQDFYF EEECCEEECCCCCCEEEEEECCCHHHEECCCCCEEECCHHHHHHHHHHCCCCCCHHHCEE KPIDGNSCHQVLNYKKSIESISEFLYPDDSHEEGKVLRLKQQYFLVSATLQSILDNYKLK CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH QKSIHELPQEVSVHINDTHPVLAIPELMRILMDEEGLDWDTAFDLTKRTISFTNHTTLPE HHHHHHCCHHEEEEECCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHEECCCCCCCHH ALESWPEETIKCLLPRIHMIVHELNERFCQSLWDKYPGDWNRIENMAILAHGRVKMAHLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCEEEEHEE LAGSHTVNGVAALHTKLLKEKLFKNFYEYMPEKFQNKTNGITHRRWLMLSNPKIADTVTD EECCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCEEEEEEECCCCHHHHHHH YIGTNWITEPKELEALEKHQDDVGLQEQLVKIRHENKQDLAEIIKKENGLTVDPNSIFDV HHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCEECCCCEEHH QVKRFHAYKRQLMNALHILKIYNQIKENPNTLFYPRTFIFSGKAAPGYHYAKKIIKLINS HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECEEEEEECCCCCCHHHHHHHHHHHHH IAELVNNDPQVNDQLKIVYLENYRVALAEKIIPASDVNQQISTASKEASGTGNMKFMMNG HHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEEC SIIVGTNDGANIDIREAVGDDNIFVFGLESEEVLQYYHHGEYSPFEIYENDLKIKRILDQ EEEEECCCCCCEEEHHHCCCCCEEEEECCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHH LVSDFLPGEENFRDIYDSLLLGNDEYFVLKDLTSLEEAQQKVSQAYQDRSKWFKKAIVNI HHHHHCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANSGRFSSDYTIKSYADKIWQATPLKTMTVNQADSSQMPAGEYSGNTY HCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure MFESRDKFKREFKEKLRKERGKAIDNASYLDLYKTLGRMVREEINDNWVATNSQMADKDK CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCC TQVHYISMEFLMGRMLKQNLLSIGALDTCQESFKELGIDFDKVVQKEPDPGLGNGGLGRL CEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHH AADFLDSLSALSIPAVGHCLRFKYGLFDQKIVNGYQVELPGNWLREGNIWEIRRGDHAHE HHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHCCCEEEECCCCCCCCCCEEEECCCCCCCE IKFGGRVTSSHQNGKLTFHHEDYESILAVPYDIPIIGYKNQVVNTLRLWNTEPAVQDFYF EEECCEEECCCCCCEEEEEECCCHHHEECCCCCEEECCHHHHHHHHHHCCCCCCHHHCEE KPIDGNSCHQVLNYKKSIESISEFLYPDDSHEEGKVLRLKQQYFLVSATLQSILDNYKLK CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH QKSIHELPQEVSVHINDTHPVLAIPELMRILMDEEGLDWDTAFDLTKRTISFTNHTTLPE HHHHHHCCHHEEEEECCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHEECCCCCCCHH ALESWPEETIKCLLPRIHMIVHELNERFCQSLWDKYPGDWNRIENMAILAHGRVKMAHLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCEEEEHEE LAGSHTVNGVAALHTKLLKEKLFKNFYEYMPEKFQNKTNGITHRRWLMLSNPKIADTVTD EECCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCEEEEEEECCCCHHHHHHH YIGTNWITEPKELEALEKHQDDVGLQEQLVKIRHENKQDLAEIIKKENGLTVDPNSIFDV HHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCEECCCCEEHH QVKRFHAYKRQLMNALHILKIYNQIKENPNTLFYPRTFIFSGKAAPGYHYAKKIIKLINS HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECEEEEEECCCCCCHHHHHHHHHHHHH IAELVNNDPQVNDQLKIVYLENYRVALAEKIIPASDVNQQISTASKEASGTGNMKFMMNG HHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEEC SIIVGTNDGANIDIREAVGDDNIFVFGLESEEVLQYYHHGEYSPFEIYENDLKIKRILDQ EEEEECCCCCCEEEHHHCCCCCEEEEECCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHH LVSDFLPGEENFRDIYDSLLLGNDEYFVLKDLTSLEEAQQKVSQAYQDRSKWFKKAIVNI HHHHHCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANSGRFSSDYTIKSYADKIWQATPLKTMTVNQADSSQMPAGEYSGNTY HCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8145641; 9387221; 9384377 [H]