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The map label for this gene is psd [H]

Identifier: 188585193

GI number: 188585193

Start: 577011

End: 577670

Strand: Direct

Name: psd [H]

Synonym: Nther_0554

Alternate gene names: 188585193

Gene position: 577011-577670 (Clockwise)

Preceding gene: 188585192

Following gene: 188585203

Centisome position: 18.23

GC content: 35.45

Gene sequence:

>660_bases
ATGAGAAGCTTTACAATTTCTAAACATGGATTTAGCACAATTGGATTCTTTTTAATAGGAGCTTTAATTAGCTGGTTTAT
AAATCAGTGGTTAATGTTAACTTTTTTATGTTTTGCTACTTTTACAGCAGCCTTTTTCAGAAATCCTAAAAGGTTCCCGC
CCCAAGGTGAAGAAGTAGTAGTTTCTCCCGCAGACGGTAAAGTTATGGAAGTCGATGAAGTTATTGAGCCGAATTTTACT
AATAATAAAATGAAGCGGGTAAGAATATTTTTATCTTTATTTAATGTGCATATGAATAGGATGCCCATTGATGGTAATAT
AGCTGGCACTAGTTACTTACCAGGTAAATATTTATTAGCCTGGAAAGATAAGGTTTCCGATGAAAACGAAAGAAATGCAA
TTCTAATTGATCATTACGGTTCTCCCTTTGTTGTTGTGCAAATAGCTGGCTTTGTAGCTAGGCGCATTGTTTCCCAAGTC
ACAGAAGGTCAAGCTGTTACAAAGGGTGATCTTTTTGGAATGATCAAATTCGGTTCATGCACCGAACTGTATCTTCCTAT
GGAAACTGTAGTAAAGGTGAAATCCGGAGATAAAGTGAAAGCAGGAGAAACTATCTTGGCAGAAATGCCAGAAAAAAATA
AATCTACGGTAAAAAAATAA

Upstream 100 bases:

>100_bases
GTATTTTATGCTAATTCATGATAGATTACATAGTGAATTGGAGATACTGAGTAATTGCAGTAGCTAGAGTTTCTACTCAA
GTTGGAATGGGGAGATTAAC

Downstream 100 bases:

>100_bases
GTCAATATAAAATAATTACCCCGGCATTAGCCGGGGTTTTTTATTAGTCCGATTCAGAAGAGACAGAATAATTTTCTTCC
CAGAGTTCATCGGCTTTTCT

Product: phosphatidylserine decarboxylase related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MRSFTISKHGFSTIGFFLIGALISWFINQWLMLTFLCFATFTAAFFRNPKRFPPQGEEVVVSPADGKVMEVDEVIEPNFT
NNKMKRVRIFLSLFNVHMNRMPIDGNIAGTSYLPGKYLLAWKDKVSDENERNAILIDHYGSPFVVVQIAGFVARRIVSQV
TEGQAVTKGDLFGMIKFGSCTELYLPMETVVKVKSGDKVKAGETILAEMPEKNKSTVKK

Sequences:

>Translated_219_residues
MRSFTISKHGFSTIGFFLIGALISWFINQWLMLTFLCFATFTAAFFRNPKRFPPQGEEVVVSPADGKVMEVDEVIEPNFT
NNKMKRVRIFLSLFNVHMNRMPIDGNIAGTSYLPGKYLLAWKDKVSDENERNAILIDHYGSPFVVVQIAGFVARRIVSQV
TEGQAVTKGDLFGMIKFGSCTELYLPMETVVKVKSGDKVKAGETILAEMPEKNKSTVKK
>Mature_219_residues
MRSFTISKHGFSTIGFFLIGALISWFINQWLMLTFLCFATFTAAFFRNPKRFPPQGEEVVVSPADGKVMEVDEVIEPNFT
NNKMKRVRIFLSLFNVHMNRMPIDGNIAGTSYLPGKYLLAWKDKVSDENERNAILIDHYGSPFVVVQIAGFVARRIVSQV
TEGQAVTKGDLFGMIKFGSCTELYLPMETVVKVKSGDKVKAGETILAEMPEKNKSTVKK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR004428 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 24616; Mature: 24616

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSFTISKHGFSTIGFFLIGALISWFINQWLMLTFLCFATFTAAFFRNPKRFPPQGEEVV
CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
VSPADGKVMEVDEVIEPNFTNNKMKRVRIFLSLFNVHMNRMPIDGNIAGTSYLPGKYLLA
EECCCCCEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE
WKDKVSDENERNAILIDHYGSPFVVVQIAGFVARRIVSQVTEGQAVTKGDLFGMIKFGSC
ECCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHCCCCEECCCEEEEEEECCC
TELYLPMETVVKVKSGDKVKAGETILAEMPEKNKSTVKK
EEEEECHHHHEEECCCCCCCCCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRSFTISKHGFSTIGFFLIGALISWFINQWLMLTFLCFATFTAAFFRNPKRFPPQGEEVV
CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
VSPADGKVMEVDEVIEPNFTNNKMKRVRIFLSLFNVHMNRMPIDGNIAGTSYLPGKYLLA
EECCCCCEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE
WKDKVSDENERNAILIDHYGSPFVVVQIAGFVARRIVSQVTEGQAVTKGDLFGMIKFGSC
ECCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHCCCCEECCCEEEEEEECCC
TELYLPMETVVKVKSGDKVKAGETILAEMPEKNKSTVKK
EEEEECHHHHEEECCCCCCCCCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA