Click here to switch to the map view.

The map label for this gene is 188585163

Identifier: 188585163

GI number: 188585163

Start: 545987

End: 546844

Strand: Direct

Name: 188585163

Synonym: Nther_0524

Alternate gene names: NA

Gene position: 545987-546844 (Clockwise)

Preceding gene: 188585162

Following gene: 188585164

Centisome position: 17.25

GC content: 34.73

Gene sequence:

>858_bases
GTGATAGCTTTGAATTTTAGAGTTCATTGGACTTTGATTTTATTTGGAATTGTTTATCTATTTACCGGTTTTTTACAGGA
GATAGGTATTTTTTTTGTTTTAGTAATATTACATGAATTGTCTCATACGATTGTGGCTATCAGCCACGGTTTTAAAGTAG
AGGAAACAGTCCTTTATCCCTTTGGAGGGCGGGCAAAAATTGATGGATTAATTGAAGAAGATCCTTACAGGGAATTACAT
ATCGCCCTAGCTGGTCCTTTAACTAATATATTACTTGCTATTCTCTTTTTATCCTTGGATCAATATTCAATCTTTTCTGA
AGAAATAATTTTGTTTGCCGTAAGGGCAAATATAATCCTGGCATTGTTCAATTTATTTCCTGGCCTTCCCCTGGATGGTG
GCAGAGTGTTGAGAGCTAGCTTGAGTAAGAGAATGAGCTTTCGTGAAGCCACTCATTACGCTTGTCAGGGTGGGAAACTG
GTTGGGATTTTACTAGTTATCTTTGGAATTGTAGTGGGTATAGTGTGGCAATATATTAATATAACTTTTTTCCTTGCCGG
ATTATTTGTTTTTATAGTTGCTTTAAGAGAAGAAAAAGAGGCAACTTATCTTTATTACAGGCATCTCACTAGAAAAAAGC
AACTTTTGACTCAAGAAGGAGTCCTTCCCTGTGAAATCTTAATTGCCTTTGAAGCTACATCATTAAAAGAAGTTACCAGT
CTATTTCGCCCCAAAAAATATCATATTTTGCATGTAATTGACGCAAACTGGGAAAAAAAGGCTATCATAGAAGAAAAAGA
TATTATTGATGCCATGTTTACTAGAGGTCCTCATATAAAAATTTCACAGATTTTATGA

Upstream 100 bases:

>100_bases
GAGTATTAGATGAAATAGAAATACTTCCTGTGATAGATGATGATAGTGAAGAAGAGGTGTTTGATATAGACAACTAAAAT
TTTAATCTAAATCAGGATAG

Downstream 100 bases:

>100_bases
ATTGGCTGTATTAAATAAGAATGTTGATAACTGAAATTTCAGTTTCACAGGATCAACAAAAGAATATAATAGCGCCTATG
AATTGAGCTATGAATATTCA

Product: peptidase M50

Products: NA

Alternate protein names: Site-2-type intermembrane protease [H]

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MIALNFRVHWTLILFGIVYLFTGFLQEIGIFFVLVILHELSHTIVAISHGFKVEETVLYPFGGRAKIDGLIEEDPYRELH
IALAGPLTNILLAILFLSLDQYSIFSEEIILFAVRANIILALFNLFPGLPLDGGRVLRASLSKRMSFREATHYACQGGKL
VGILLVIFGIVVGIVWQYINITFFLAGLFVFIVALREEKEATYLYYRHLTRKKQLLTQEGVLPCEILIAFEATSLKEVTS
LFRPKKYHILHVIDANWEKKAIIEEKDIIDAMFTRGPHIKISQIL

Sequences:

>Translated_285_residues
MIALNFRVHWTLILFGIVYLFTGFLQEIGIFFVLVILHELSHTIVAISHGFKVEETVLYPFGGRAKIDGLIEEDPYRELH
IALAGPLTNILLAILFLSLDQYSIFSEEIILFAVRANIILALFNLFPGLPLDGGRVLRASLSKRMSFREATHYACQGGKL
VGILLVIFGIVVGIVWQYINITFFLAGLFVFIVALREEKEATYLYYRHLTRKKQLLTQEGVLPCEILIAFEATSLKEVTS
LFRPKKYHILHVIDANWEKKAIIEEKDIIDAMFTRGPHIKISQIL
>Mature_285_residues
MIALNFRVHWTLILFGIVYLFTGFLQEIGIFFVLVILHELSHTIVAISHGFKVEETVLYPFGGRAKIDGLIEEDPYRELH
IALAGPLTNILLAILFLSLDQYSIFSEEIILFAVRANIILALFNLFPGLPLDGGRVLRASLSKRMSFREATHYACQGGKL
VGILLVIFGIVVGIVWQYINITFFLAGLFVFIVALREEKEATYLYYRHLTRKKQLLTQEGVLPCEILIAFEATSLKEVTS
LFRPKKYHILHVIDANWEKKAIIEEKDIIDAMFTRGPHIKISQIL

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR008915
- InterPro:   IPR016483 [H]

Pfam domain/function: PF00571 CBS; PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 32477; Mature: 32477

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIALNFRVHWTLILFGIVYLFTGFLQEIGIFFVLVILHELSHTIVAISHGFKVEETVLYP
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEEEEC
FGGRAKIDGLIEEDPYRELHIALAGPLTNILLAILFLSLDQYSIFSEEIILFAVRANIIL
CCCCCEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ALFNLFPGLPLDGGRVLRASLSKRMSFREATHYACQGGKLVGILLVIFGIVVGIVWQYIN
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
ITFFLAGLFVFIVALREEKEATYLYYRHLTRKKQLLTQEGVLPCEILIAFEATSLKEVTS
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH
LFRPKKYHILHVIDANWEKKAIIEEKDIIDAMFTRGPHIKISQIL
HHCCCCEEEEEEEECCCCCHHHCCHHHHHHHHHCCCCCEEECCCC
>Mature Secondary Structure
MIALNFRVHWTLILFGIVYLFTGFLQEIGIFFVLVILHELSHTIVAISHGFKVEETVLYP
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEEEEC
FGGRAKIDGLIEEDPYRELHIALAGPLTNILLAILFLSLDQYSIFSEEIILFAVRANIIL
CCCCCEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ALFNLFPGLPLDGGRVLRASLSKRMSFREATHYACQGGKLVGILLVIFGIVVGIVWQYIN
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
ITFFLAGLFVFIVALREEKEATYLYYRHLTRKKQLLTQEGVLPCEILIAFEATSLKEVTS
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH
LFRPKKYHILHVIDANWEKKAIIEEKDIIDAMFTRGPHIKISQIL
HHCCCCEEEEEEEECCCCCHHHCCHHHHHHHHHCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]