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The map label for this gene is ydaO [C]

Identifier: 188585053

GI number: 188585053

Start: 434135

End: 435076

Strand: Reverse

Name: ydaO [C]

Synonym: Nther_0414

Alternate gene names: 188585053

Gene position: 435076-434135 (Counterclockwise)

Preceding gene: 188585054

Following gene: 188585052

Centisome position: 13.74

GC content: 36.31

Gene sequence:

>942_bases
TTGAAATGTTTCAAATGTGATTCCCAGGCAATCTTGAGAATCAAAAGACACAAGGCAACTTTATGTGAAACACATCTGGT
TGAGCACCTTCAAAACCAAATGATTAAAGCAATCAAAAAATTCAAAATGTTACCTCCTAATGAAAAAGTTATCGTAGCTA
TCTCAGGGGGAAAGGATAGTTTGGCTCTGTGGGATATGTTACTAGATCGCGGATACAAAGCGGATGCATTTTATATCGAC
CTGGGTATTGATGAATATTCAAAAACCTCAATGGAAAAAGCTCAAAGTTTTGCCGAAAAAGTTTCAGGAAATCTTTATAC
GATTTCACTACCAAAATTGTATAACACAGGAATCAAAGAAATCTCTAGAAACAACCCTAGATCCGCATGTTCGGCATGTG
GATTAATAAAAAGATATATTATGAATATCTTCGCCAAATATGGAAATTATCATGCTGTTGCAACAGGTCACAATTTAGAT
GATGAGGCATCTTCTCTGTTAGGAAATACTCTCAGATGGCAAACTGGGTACTTGAGCAGGCAGTCTCCTAGTATGCCATC
AAATAATGGCCTTGCTAAAAAGATTAAACCTCTATGTCGTTTGGCAGAGAAAGAAACAGCCGCTTATTGCATTACTAAAA
ATATCGATTATATCTTGGAAGAATGCCCTATGGCACAGGGTGCCAGTAGTTTTGATTATAAAGAGGTATTAAACAATCTT
GAACTAAAGTCACCTGGGACTAAAGATCAGTTTTATCTAGACTTTTTGCGTACTGCCCAACCATATTTCAAATCAAACAA
ACAAGATATTACTTTGGTAAAATGTCCAACATGTGGGGAACCAACAAGTCAAGATAGAGATTGTAGCTTCTGCAGGCAAA
TGAAAAGTAATCAATTAGACCCTCTTAAAGTCAAGGAGGAAATCTCCGGTTTTTTCAAATAA

Upstream 100 bases:

>100_bases
AAGAAGGACAAATTTTAACCCATGATAAAATTGTCAAAGATCATGAAAATATAGAAATTATCTCAGTTGTTTCAGGCGGA
TAAATTGGAGGTGACGAACC

Downstream 100 bases:

>100_bases
GAAAGGTGGCTTAATAAAGAAATGTCGAAAATATATGCTTTATATGGAAAAAGCGGCACTGGCAAAAGTCACCGCGCCAT
AAGTATTGCTTTCAATTACA

Product: PP-loop domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKCFKCDSQAILRIKRHKATLCETHLVEHLQNQMIKAIKKFKMLPPNEKVIVAISGGKDSLALWDMLLDRGYKADAFYID
LGIDEYSKTSMEKAQSFAEKVSGNLYTISLPKLYNTGIKEISRNNPRSACSACGLIKRYIMNIFAKYGNYHAVATGHNLD
DEASSLLGNTLRWQTGYLSRQSPSMPSNNGLAKKIKPLCRLAEKETAAYCITKNIDYILEECPMAQGASSFDYKEVLNNL
ELKSPGTKDQFYLDFLRTAQPYFKSNKQDITLVKCPTCGEPTSQDRDCSFCRQMKSNQLDPLKVKEEISGFFK

Sequences:

>Translated_313_residues
MKCFKCDSQAILRIKRHKATLCETHLVEHLQNQMIKAIKKFKMLPPNEKVIVAISGGKDSLALWDMLLDRGYKADAFYID
LGIDEYSKTSMEKAQSFAEKVSGNLYTISLPKLYNTGIKEISRNNPRSACSACGLIKRYIMNIFAKYGNYHAVATGHNLD
DEASSLLGNTLRWQTGYLSRQSPSMPSNNGLAKKIKPLCRLAEKETAAYCITKNIDYILEECPMAQGASSFDYKEVLNNL
ELKSPGTKDQFYLDFLRTAQPYFKSNKQDITLVKCPTCGEPTSQDRDCSFCRQMKSNQLDPLKVKEEISGFFK
>Mature_313_residues
MKCFKCDSQAILRIKRHKATLCETHLVEHLQNQMIKAIKKFKMLPPNEKVIVAISGGKDSLALWDMLLDRGYKADAFYID
LGIDEYSKTSMEKAQSFAEKVSGNLYTISLPKLYNTGIKEISRNNPRSACSACGLIKRYIMNIFAKYGNYHAVATGHNLD
DEASSLLGNTLRWQTGYLSRQSPSMPSNNGLAKKIKPLCRLAEKETAAYCITKNIDYILEECPMAQGASSFDYKEVLNNL
ELKSPGTKDQFYLDFLRTAQPYFKSNKQDITLVKCPTCGEPTSQDRDCSFCRQMKSNQLDPLKVKEEISGFFK

Specific function: Unknown

COG id: COG0037

COG function: function code D; Predicted ATPase of the PP-loop superfamily implicated in cell cycle control

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TtcA family [H]

Homologues:

Organism=Homo sapiens, GI222537719, Length=270, Percent_Identity=26.2962962962963, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17540090, Length=287, Percent_Identity=26.8292682926829, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI193211090, Length=222, Percent_Identity=25.6756756756757, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24651972, Length=297, Percent_Identity=28.6195286195286, Blast_Score=94, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012089
- InterPro:   IPR014729
- InterPro:   IPR011063
- InterPro:   IPR020554 [H]

Pfam domain/function: PF01171 ATP_bind_3 [H]

EC number: NA

Molecular weight: Translated: 35403; Mature: 35403

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCFKCDSQAILRIKRHKATLCETHLVEHLQNQMIKAIKKFKMLPPNEKVIVAISGGKDS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCH
LALWDMLLDRGYKADAFYIDLGIDEYSKTSMEKAQSFAEKVSGNLYTISLPKLYNTGIKE
HHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
ISRNNPRSACSACGLIKRYIMNIFAKYGNYHAVATGHNLDDEASSLLGNTLRWQTGYLSR
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHCCCHHHCCCCCCC
QSPSMPSNNGLAKKIKPLCRLAEKETAAYCITKNIDYILEECPMAQGASSFDYKEVLNNL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHCC
ELKSPGTKDQFYLDFLRTAQPYFKSNKQDITLVKCPTCGEPTSQDRDCSFCRQMKSNQLD
CCCCCCCCHHHHHHHHHHCCHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC
PLKVKEEISGFFK
CHHHHHHHHHCCC
>Mature Secondary Structure
MKCFKCDSQAILRIKRHKATLCETHLVEHLQNQMIKAIKKFKMLPPNEKVIVAISGGKDS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCH
LALWDMLLDRGYKADAFYIDLGIDEYSKTSMEKAQSFAEKVSGNLYTISLPKLYNTGIKE
HHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
ISRNNPRSACSACGLIKRYIMNIFAKYGNYHAVATGHNLDDEASSLLGNTLRWQTGYLSR
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHCCCHHHCCCCCCC
QSPSMPSNNGLAKKIKPLCRLAEKETAAYCITKNIDYILEECPMAQGASSFDYKEVLNNL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHCC
ELKSPGTKDQFYLDFLRTAQPYFKSNKQDITLVKCPTCGEPTSQDRDCSFCRQMKSNQLD
CCCCCCCCHHHHHHHHHHCCHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC
PLKVKEEISGFFK
CHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]