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The map label for this gene is ydiF [H]

Identifier: 188585046

GI number: 188585046

Start: 425787

End: 427691

Strand: Reverse

Name: ydiF [H]

Synonym: Nther_0407

Alternate gene names: 188585046

Gene position: 427691-425787 (Counterclockwise)

Preceding gene: 188585048

Following gene: 188585037

Centisome position: 13.51

GC content: 34.38

Gene sequence:

>1905_bases
ATGAGCTTATTGAGAGGGGAAAATCTTACAAAAGATTTTGGAATTCATAGAGTTTTTGAAAACATAACTTTTCAAATAAA
TCCGGGAGATAAAATTGGACTAATTGGTAAAAATGGTGCTGGTAAAACCACCCTGGTTAAGCTCATCACAGGAGAGCTTA
TCCCAGATTCCGGAGAAAAACTTGCACAAAAAGGTACTAACATAGGGTATTTATCCCAAGAACCTGACTTTGAGAGCGAC
TCTAGTCTATATGATGAAATGGAAAAGGTTTATTATGAACTGGTTACAATTAGCAAAGAATTGCAGCGTTTGGAGACACT
GATGGGTGAAACTAGCCAGGAAGAATTACCCCAGGTAATGAATAGGTATTCACAGCTTAGAGAAAAATTTGAACAAAGTG
GAGGGTATCAGAAAGACCGAGATATCAGAAGCGTATTAAAAGGTCTGGGATTTCGTGAAGACGAGTTTCATAAACCTATA
ATTAATTTCAGTGGTGGACAAAAAACCCGCGCTATATTAGCACAAAAGCTCCTGGAAAAACCTGACTTATTAATTCTAGA
TGAACCTACTAACTATCTGGATTTAAACGGCATTTCATGGCTTGAAAATTTTTTACAAAGTTACAGTGGCAGTTTTATTG
TCATTACTCATGACCGTTATTTTCTCAACAAAACTGTTAATAAAATTTGGGAACTAGAAGCTAACAGCTTAACAAGTTAT
TCAGGTAATTATAATGACTTTATAACTAAGAAAAGGGCATTAAAAGAAAAACAATGGAAAGATTATAAGCATCAACAACG
CAAAATCCAAAAAACCCAGGAATTTATTAGGCGAAACATAGAAGGTCAAAAAACTAAACAGGCCCAAAGCCGAAGAAAAC
AATTAGAAAAGATGGATATTATTGAAAAACCCCAGGAAGAAAATAATGATATGAAATTGGACTTAGAAACCAGTGTAACC
AGTGGCAAGGAAGTAGTCACTCTATCTAAAATCACTAAAAACATCGCCGATCAAAAAATTATCCCAGAACTTAGCTGTAA
AGTCTTTCGTGGAGAAAAAGTGGGAATTATTGGCCCTAATGGCTCTGGCAAATCCACATTATTAAAATTACTGGCAGGAC
ACTACACACCCACTAGTGGAACCATAAATTTTGGTACAAATGTGATTACTGGTTATATCGACCAGGAACAGGACGAATTA
TCTCGAGAATTAAGTTTGATAAATGAACTCAGAAAGGAATTACCTCTTACCAAGGAAGAAGAAATCAGGCGTATCCTGGG
GAGATTTCTATTTCCTCCGGAACAAATGGACGAACTAGTAGAATCTCTCAGTGGTGGTGAGAGAGTTAGGTTGGCTCTAG
CAAAATTATATGTAAGAAAAGCTAATCTATTATTACTTGATGAACCAACAAATCACTTAGATATTGATGGTAAAGAAAAC
CTGGAAAGGGCATTAAACAATTTTCCAGGTACATTGATCATGGTCTCTCATGATCGATATCTTTTAGATAAAGTTGCAAC
AAAATTGATTTCATTTTCAACGTATCCACCACACTTTTTTGAAGGTAATTTCACTGAATATCAAAACAAAATGCTTAAAT
CTAATAATGAACAAGACAGTTCCACTCAGGAAAGATCTAAAACAAAAAAGAAAAAAGGAAAATCAGATACTAAAAACAAT
CAAAAAGACTCTAAGACATCAAAAAATAACAATGAACAGCTAGCAACACAATTATTTGCTGAAATTGAAACTTTAGAAAT
CGAACAGGAAGAGCTAGAAGAACAACTGGCCGATCCTGAGTTATATCGAGATAATGAAAAAGCAAGAGAAATTAATTTAA
AATATCGTGAATTGAAAACAACCCTGGAAAAAAAGTATAAAGAATTAGATGAACTGGATTTTTAG

Upstream 100 bases:

>100_bases
CCTATCCCATTCTATGCCCTAGTTCTATTTATATTACTATTTTTTATTGCAATAGTTTGTTATAATGTAAATTCAAACAA
CAAATACAAGGGTGAAGCAA

Downstream 100 bases:

>100_bases
ACGTAAATTTCCAGAAACCCTAGTAAAAATCTCTAGTATTGATCAGAATTCTTTCGATCCACTAATCAATCAACTTCGCC
TTGCGGGAGCGGTAAATTTA

Product: ABC transporter related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 634; Mature: 633

Protein sequence:

>634_residues
MSLLRGENLTKDFGIHRVFENITFQINPGDKIGLIGKNGAGKTTLVKLITGELIPDSGEKLAQKGTNIGYLSQEPDFESD
SSLYDEMEKVYYELVTISKELQRLETLMGETSQEELPQVMNRYSQLREKFEQSGGYQKDRDIRSVLKGLGFREDEFHKPI
INFSGGQKTRAILAQKLLEKPDLLILDEPTNYLDLNGISWLENFLQSYSGSFIVITHDRYFLNKTVNKIWELEANSLTSY
SGNYNDFITKKRALKEKQWKDYKHQQRKIQKTQEFIRRNIEGQKTKQAQSRRKQLEKMDIIEKPQEENNDMKLDLETSVT
SGKEVVTLSKITKNIADQKIIPELSCKVFRGEKVGIIGPNGSGKSTLLKLLAGHYTPTSGTINFGTNVITGYIDQEQDEL
SRELSLINELRKELPLTKEEEIRRILGRFLFPPEQMDELVESLSGGERVRLALAKLYVRKANLLLLDEPTNHLDIDGKEN
LERALNNFPGTLIMVSHDRYLLDKVATKLISFSTYPPHFFEGNFTEYQNKMLKSNNEQDSSTQERSKTKKKKGKSDTKNN
QKDSKTSKNNNEQLATQLFAEIETLEIEQEELEEQLADPELYRDNEKAREINLKYRELKTTLEKKYKELDELDF

Sequences:

>Translated_634_residues
MSLLRGENLTKDFGIHRVFENITFQINPGDKIGLIGKNGAGKTTLVKLITGELIPDSGEKLAQKGTNIGYLSQEPDFESD
SSLYDEMEKVYYELVTISKELQRLETLMGETSQEELPQVMNRYSQLREKFEQSGGYQKDRDIRSVLKGLGFREDEFHKPI
INFSGGQKTRAILAQKLLEKPDLLILDEPTNYLDLNGISWLENFLQSYSGSFIVITHDRYFLNKTVNKIWELEANSLTSY
SGNYNDFITKKRALKEKQWKDYKHQQRKIQKTQEFIRRNIEGQKTKQAQSRRKQLEKMDIIEKPQEENNDMKLDLETSVT
SGKEVVTLSKITKNIADQKIIPELSCKVFRGEKVGIIGPNGSGKSTLLKLLAGHYTPTSGTINFGTNVITGYIDQEQDEL
SRELSLINELRKELPLTKEEEIRRILGRFLFPPEQMDELVESLSGGERVRLALAKLYVRKANLLLLDEPTNHLDIDGKEN
LERALNNFPGTLIMVSHDRYLLDKVATKLISFSTYPPHFFEGNFTEYQNKMLKSNNEQDSSTQERSKTKKKKGKSDTKNN
QKDSKTSKNNNEQLATQLFAEIETLEIEQEELEEQLADPELYRDNEKAREINLKYRELKTTLEKKYKELDELDF
>Mature_633_residues
SLLRGENLTKDFGIHRVFENITFQINPGDKIGLIGKNGAGKTTLVKLITGELIPDSGEKLAQKGTNIGYLSQEPDFESDS
SLYDEMEKVYYELVTISKELQRLETLMGETSQEELPQVMNRYSQLREKFEQSGGYQKDRDIRSVLKGLGFREDEFHKPII
NFSGGQKTRAILAQKLLEKPDLLILDEPTNYLDLNGISWLENFLQSYSGSFIVITHDRYFLNKTVNKIWELEANSLTSYS
GNYNDFITKKRALKEKQWKDYKHQQRKIQKTQEFIRRNIEGQKTKQAQSRRKQLEKMDIIEKPQEENNDMKLDLETSVTS
GKEVVTLSKITKNIADQKIIPELSCKVFRGEKVGIIGPNGSGKSTLLKLLAGHYTPTSGTINFGTNVITGYIDQEQDELS
RELSLINELRKELPLTKEEEIRRILGRFLFPPEQMDELVESLSGGERVRLALAKLYVRKANLLLLDEPTNHLDIDGKENL
ERALNNFPGTLIMVSHDRYLLDKVATKLISFSTYPPHFFEGNFTEYQNKMLKSNNEQDSSTQERSKTKKKKGKSDTKNNQ
KDSKTSKNNNEQLATQLFAEIETLEIEQEELEEQLADPELYRDNEKAREINLKYRELKTTLEKKYKELDELDF

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=531, Percent_Identity=31.8267419962335, Blast_Score=248, Evalue=2e-65,
Organism=Homo sapiens, GI10947137, Length=511, Percent_Identity=32.4853228962818, Blast_Score=222, Evalue=1e-57,
Organism=Homo sapiens, GI27881506, Length=511, Percent_Identity=32.4853228962818, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI69354671, Length=542, Percent_Identity=30.9963099630996, Blast_Score=195, Evalue=1e-49,
Organism=Homo sapiens, GI10947135, Length=542, Percent_Identity=30.9963099630996, Blast_Score=195, Evalue=1e-49,
Organism=Homo sapiens, GI47078218, Length=194, Percent_Identity=29.8969072164948, Blast_Score=71, Evalue=3e-12,
Organism=Homo sapiens, GI45446740, Length=194, Percent_Identity=29.8969072164948, Blast_Score=71, Evalue=4e-12,
Organism=Escherichia coli, GI1789751, Length=601, Percent_Identity=33.4442595673877, Blast_Score=338, Evalue=5e-94,
Organism=Escherichia coli, GI2367384, Length=516, Percent_Identity=35.4651162790698, Blast_Score=315, Evalue=4e-87,
Organism=Escherichia coli, GI1787041, Length=530, Percent_Identity=32.8301886792453, Blast_Score=290, Evalue=3e-79,
Organism=Escherichia coli, GI1787182, Length=521, Percent_Identity=32.0537428023033, Blast_Score=268, Evalue=8e-73,
Organism=Escherichia coli, GI87081782, Length=501, Percent_Identity=24.750499001996, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1788165, Length=191, Percent_Identity=30.8900523560209, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787758, Length=178, Percent_Identity=32.5842696629214, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788761, Length=217, Percent_Identity=28.110599078341, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1786253, Length=186, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081834, Length=193, Percent_Identity=32.6424870466321, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1789593, Length=232, Percent_Identity=25.4310344827586, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1786345, Length=220, Percent_Identity=29.5454545454545, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87081709, Length=204, Percent_Identity=26.9607843137255, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87081791, Length=245, Percent_Identity=25.7142857142857, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1789873, Length=184, Percent_Identity=30.4347826086957, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787029, Length=232, Percent_Identity=24.5689655172414, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI48994997, Length=215, Percent_Identity=26.5116279069767, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1786803, Length=198, Percent_Identity=29.2929292929293, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1790467, Length=203, Percent_Identity=29.064039408867, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI1789891, Length=222, Percent_Identity=23.8738738738739, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787164, Length=182, Percent_Identity=31.3186813186813, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI87082268, Length=166, Percent_Identity=30.7228915662651, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=541, Percent_Identity=33.456561922366, Blast_Score=249, Evalue=3e-66,
Organism=Caenorhabditis elegans, GI17555318, Length=556, Percent_Identity=30.3956834532374, Blast_Score=247, Evalue=1e-65,
Organism=Caenorhabditis elegans, GI17559834, Length=544, Percent_Identity=28.8602941176471, Blast_Score=215, Evalue=7e-56,
Organism=Caenorhabditis elegans, GI71992290, Length=184, Percent_Identity=29.8913043478261, Blast_Score=69, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=183, Percent_Identity=31.6939890710383, Blast_Score=68, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=185, Percent_Identity=25.9459459459459, Blast_Score=66, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=166, Percent_Identity=33.1325301204819, Blast_Score=65, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI25146777, Length=186, Percent_Identity=28.494623655914, Blast_Score=65, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6320874, Length=545, Percent_Identity=31.743119266055, Blast_Score=232, Evalue=1e-61,
Organism=Saccharomyces cerevisiae, GI6321121, Length=539, Percent_Identity=28.5714285714286, Blast_Score=226, Evalue=6e-60,
Organism=Saccharomyces cerevisiae, GI6324314, Length=388, Percent_Identity=26.5463917525773, Blast_Score=117, Evalue=6e-27,
Organism=Saccharomyces cerevisiae, GI6325030, Length=385, Percent_Identity=25.1948051948052, Blast_Score=114, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6323278, Length=366, Percent_Identity=26.5027322404372, Blast_Score=112, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6323217, Length=280, Percent_Identity=28.2142857142857, Blast_Score=72, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6324985, Length=177, Percent_Identity=30.5084745762712, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24666836, Length=547, Percent_Identity=32.5411334552102, Blast_Score=261, Evalue=8e-70,
Organism=Drosophila melanogaster, GI24642252, Length=552, Percent_Identity=31.1594202898551, Blast_Score=246, Evalue=4e-65,
Organism=Drosophila melanogaster, GI18859989, Length=552, Percent_Identity=31.1594202898551, Blast_Score=246, Evalue=4e-65,
Organism=Drosophila melanogaster, GI24641342, Length=553, Percent_Identity=31.2839059674503, Blast_Score=216, Evalue=5e-56,
Organism=Drosophila melanogaster, GI28574259, Length=169, Percent_Identity=30.7692307692308, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24659289, Length=185, Percent_Identity=27.027027027027, Blast_Score=68, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 73134; Mature: 73003

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLRGENLTKDFGIHRVFENITFQINPGDKIGLIGKNGAGKTTLVKLITGELIPDSGEK
CCCCCCCCCCHHHHHHHHHHCCEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCHH
LAQKGTNIGYLSQEPDFESDSSLYDEMEKVYYELVTISKELQRLETLMGETSQEELPQVM
HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
NRYSQLREKFEQSGGYQKDRDIRSVLKGLGFREDEFHKPIINFSGGQKTRAILAQKLLEK
HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHCCCCEECCCCHHHHHHHHHHHHCC
PDLLILDEPTNYLDLNGISWLENFLQSYSGSFIVITHDRYFLNKTVNKIWELEANSLTSY
CCEEEEECCCCEEECCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCC
SGNYNDFITKKRALKEKQWKDYKHQQRKIQKTQEFIRRNIEGQKTKQAQSRRKQLEKMDI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
IEKPQEENNDMKLDLETSVTSGKEVVTLSKITKNIADQKIIPELSCKVFRGEKVGIIGPN
HCCCCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHCCHHHHHHEECCCEEEEECCC
GSGKSTLLKLLAGHYTPTSGTINFGTNVITGYIDQEQDELSRELSLINELRKELPLTKEE
CCCHHHHHHHHHCCCCCCCCEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHH
EIRRILGRFLFPPEQMDELVESLSGGERVRLALAKLYVRKANLLLLDEPTNHLDIDGKEN
HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHH
LERALNNFPGTLIMVSHDRYLLDKVATKLISFSTYPPHFFEGNFTEYQNKMLKSNNEQDS
HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
STQERSKTKKKKGKSDTKNNQKDSKTSKNNNEQLATQLFAEIETLEIEQEELEEQLADPE
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCH
LYRDNEKAREINLKYRELKTTLEKKYKELDELDF
HHCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLLRGENLTKDFGIHRVFENITFQINPGDKIGLIGKNGAGKTTLVKLITGELIPDSGEK
CCCCCCCCCHHHHHHHHHHCCEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCHH
LAQKGTNIGYLSQEPDFESDSSLYDEMEKVYYELVTISKELQRLETLMGETSQEELPQVM
HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
NRYSQLREKFEQSGGYQKDRDIRSVLKGLGFREDEFHKPIINFSGGQKTRAILAQKLLEK
HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHCCCCEECCCCHHHHHHHHHHHHCC
PDLLILDEPTNYLDLNGISWLENFLQSYSGSFIVITHDRYFLNKTVNKIWELEANSLTSY
CCEEEEECCCCEEECCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCC
SGNYNDFITKKRALKEKQWKDYKHQQRKIQKTQEFIRRNIEGQKTKQAQSRRKQLEKMDI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
IEKPQEENNDMKLDLETSVTSGKEVVTLSKITKNIADQKIIPELSCKVFRGEKVGIIGPN
HCCCCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHCCHHHHHHEECCCEEEEECCC
GSGKSTLLKLLAGHYTPTSGTINFGTNVITGYIDQEQDELSRELSLINELRKELPLTKEE
CCCHHHHHHHHHCCCCCCCCEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHH
EIRRILGRFLFPPEQMDELVESLSGGERVRLALAKLYVRKANLLLLDEPTNHLDIDGKEN
HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHH
LERALNNFPGTLIMVSHDRYLLDKVATKLISFSTYPPHFFEGNFTEYQNKMLKSNNEQDS
HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
STQERSKTKKKKGKSDTKNNQKDSKTSKNNNEQLATQLFAEIETLEIEQEELEEQLADPE
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCH
LYRDNEKAREINLKYRELKTTLEKKYKELDELDF
HHCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]