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The map label for this gene is ybiH [C]

Identifier: 188584962

GI number: 188584962

Start: 337661

End: 338332

Strand: Direct

Name: ybiH [C]

Synonym: Nther_0322

Alternate gene names: 188584962

Gene position: 337661-338332 (Clockwise)

Preceding gene: 188584961

Following gene: 188584963

Centisome position: 10.67

GC content: 30.8

Gene sequence:

>672_bases
ATGGTGACAGAAAAATTTACCAATATAGAACCGGAAAAACAAGACCGAGTTATAACTGCTGCTTTAAAAGAGTTTTCAGA
ACATGGGTATGAAAAAGCTTCTACAAATCGAATAGTTAAGCAAGCGGGGATTGGCAAAGGTATGCTGTTCTACTATTTCA
AGAATAAAAAGGAACTTTATTACTATTTAATTGATTATTCCATAGACTATGTGACTAATGAGTACCTCGGCCATATTAAT
GAAAATGTAGTTGATTTTATAGAAAGATATAGACAGATCGCACAAATAAAAATGAAAAAATATGCTGAAAATCCTCACGT
TTTTAATTTTTTGGGTTCAATTTATATAAATAAAGATGTTAAATTACCACAGGAACTACAAAAGCGCTTTATTGATGCAA
GAGAATATGGTTATAGAGTACTATTTAGAAATGTAGACACTTCTTTATTTCGCCAAGATATTGATTCGGATAAAATCCTA
AAACTTATTTACTGGACTCTTGAGGGTTATGAACAAGAGATACTCAAGAAGTTGGAGGGCCAGAAATTATCACAAATTGA
TTATGAACCTTATTGGGATGAATTGGATCAGTATTTAGATATATTGAAAAAAGTTTATTATAGACAAGAGGGGGGTAAAA
ATGACCATTTTGATAGCAGACAATATTACTAA

Upstream 100 bases:

>100_bases
TATCAATCAAGCTAGACCAATGTGGTCAAAAAAAGTGAAATTTATTAGAACAATTTAGAACAATTCGTGTAATCTAGAAA
AATATCCTTAGGAGTGATGC

Downstream 100 bases:

>100_bases
GAAGTTTGGGAAGTTCACTGCTCTAAAAAAGGTTAACCTGGAAGTTAAAAAAGGTGAAATATTTGGTTTCATTGGGCCGA
ATGGAGCGGGTAAGACTACT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; Transcriptional Regulator; Regulatory Protein TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MVTEKFTNIEPEKQDRVITAALKEFSEHGYEKASTNRIVKQAGIGKGMLFYYFKNKKELYYYLIDYSIDYVTNEYLGHIN
ENVVDFIERYRQIAQIKMKKYAENPHVFNFLGSIYINKDVKLPQELQKRFIDAREYGYRVLFRNVDTSLFRQDIDSDKIL
KLIYWTLEGYEQEILKKLEGQKLSQIDYEPYWDELDQYLDILKKVYYRQEGGKNDHFDSRQYY

Sequences:

>Translated_223_residues
MVTEKFTNIEPEKQDRVITAALKEFSEHGYEKASTNRIVKQAGIGKGMLFYYFKNKKELYYYLIDYSIDYVTNEYLGHIN
ENVVDFIERYRQIAQIKMKKYAENPHVFNFLGSIYINKDVKLPQELQKRFIDAREYGYRVLFRNVDTSLFRQDIDSDKIL
KLIYWTLEGYEQEILKKLEGQKLSQIDYEPYWDELDQYLDILKKVYYRQEGGKNDHFDSRQYY
>Mature_223_residues
MVTEKFTNIEPEKQDRVITAALKEFSEHGYEKASTNRIVKQAGIGKGMLFYYFKNKKELYYYLIDYSIDYVTNEYLGHIN
ENVVDFIERYRQIAQIKMKKYAENPHVFNFLGSIYINKDVKLPQELQKRFIDAREYGYRVLFRNVDTSLFRQDIDSDKIL
KLIYWTLEGYEQEILKKLEGQKLSQIDYEPYWDELDQYLDILKKVYYRQEGGKNDHFDSRQYY

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27024; Mature: 27024

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTEKFTNIEPEKQDRVITAALKEFSEHGYEKASTNRIVKQAGIGKGMLFYYFKNKKELY
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCEEE
YYLIDYSIDYVTNEYLGHINENVVDFIERYRQIAQIKMKKYAENPHVFNFLGSIYINKDV
EEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
KLPQELQKRFIDAREYGYRVLFRNVDTSLFRQDIDSDKILKLIYWTLEGYEQEILKKLEG
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
QKLSQIDYEPYWDELDQYLDILKKVYYRQEGGKNDHFDSRQYY
CHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MVTEKFTNIEPEKQDRVITAALKEFSEHGYEKASTNRIVKQAGIGKGMLFYYFKNKKELY
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCEEE
YYLIDYSIDYVTNEYLGHINENVVDFIERYRQIAQIKMKKYAENPHVFNFLGSIYINKDV
EEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
KLPQELQKRFIDAREYGYRVLFRNVDTSLFRQDIDSDKILKLIYWTLEGYEQEILKKLEG
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
QKLSQIDYEPYWDELDQYLDILKKVYYRQEGGKNDHFDSRQYY
CHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA