Click here to switch to the map view.

The map label for this gene is 188584780

Identifier: 188584780

GI number: 188584780

Start: 161685

End: 162668

Strand: Reverse

Name: 188584780

Synonym: Nther_0138

Alternate gene names: NA

Gene position: 162668-161685 (Counterclockwise)

Preceding gene: 188584782

Following gene: 188584775

Centisome position: 5.14

GC content: 31.71

Gene sequence:

>984_bases
ATGGAGTTTTTTCAAATCCAAGCTATGGAGCCAATACCTAGACAATCAGTACCTACAGGAGATGATTGGTTCTATCAAAT
AAAATGGGATGGAATTAGAATCTTAACTTTTTTTGATGGAAATTCCATTAAACTTAGAACTAAAAAAGGCTTTAAAAGAA
CAACTGAGTACCCAGAATTAAATGAACTAACTAAAGAGTTCGGAAATACCACTTGGTTATTAGATGGAGAAATAATTGTC
GCAAATCAAACAGACAAATCAGACCACCCCAAATTTATTACAACCAATGAATCCTGTGAGGAAGTTGGAGCTAATTTTTT
TCATGTCCTTAAAAGAGATAGAACCAAGAATCCAACCCAAAAGCTTTTAAAAACTTTCCCCGTGCGGTATAAAGTTTTTG
ATCTATTAATGATTGATAATCAGTGGCTAGTAAATGAACCCTTTATAAAAAGGAGAGAATTACTCAACAAACATTTTAAT
AATAACAAGTTCTTACAAATAATTCGTTCTTATTCAGATGGATTAAGTCTTTTTAATATTACTAGCCAACAAAACCATGA
AGGTATTGTGGCAAAAAAAAGTAATTCAATTTATCATCCAGGAAAAAAACACAGTGAGTGGTTTAAAATAAAACACCTCA
AGTATTTACAAGCTTATTTAGGAGGCGTAATAGTCAAAGAAAACCAAATAAAAAGTTTATTACTAGGACAAAAAAGTGAT
CTGGCTGATTACAAACTAAACTATATAGGAAGGGCTAGTACTGGCCTTACTCAAAAAGAGTTAAATATGTTAAAAGATTT
TGCTTTTAAGAATAGAGTCTCTAACTCTCCCTTTGGCAACCTATCTAAGGTGGATTTAGAACTAGCTGATTCTAAAGAAT
CTGTAGTTTTTTTGTCTCCACAATTAAAGCTACAGGTAAAATATACTAATTGGACTCCAGGAGGAAATCTACGGCATCCT
GTTATAAATGGTTTTATAATTTGA

Upstream 100 bases:

>100_bases
TATCAAACTTAAGCATTTTTTAGTGAAATGAAATTTAACAGTTATCAACATTCAACTTTAATATAGCTATATTAAAACTA
TATCACTAGGGGTGGTAGCA

Downstream 100 bases:

>100_bases
GCTCTATCCGGATTTTTCTTTGACTAAGTCAACACTTTTTTCTAATGCCTCCATCAAATTGACAACACGTTCGTCTTTAG
GTCTCTCTGGAATTGTTACA

Product: ATP dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MEFFQIQAMEPIPRQSVPTGDDWFYQIKWDGIRILTFFDGNSIKLRTKKGFKRTTEYPELNELTKEFGNTTWLLDGEIIV
ANQTDKSDHPKFITTNESCEEVGANFFHVLKRDRTKNPTQKLLKTFPVRYKVFDLLMIDNQWLVNEPFIKRRELLNKHFN
NNKFLQIIRSYSDGLSLFNITSQQNHEGIVAKKSNSIYHPGKKHSEWFKIKHLKYLQAYLGGVIVKENQIKSLLLGQKSD
LADYKLNYIGRASTGLTQKELNMLKDFAFKNRVSNSPFGNLSKVDLELADSKESVVFLSPQLKLQVKYTNWTPGGNLRHP
VINGFII

Sequences:

>Translated_327_residues
MEFFQIQAMEPIPRQSVPTGDDWFYQIKWDGIRILTFFDGNSIKLRTKKGFKRTTEYPELNELTKEFGNTTWLLDGEIIV
ANQTDKSDHPKFITTNESCEEVGANFFHVLKRDRTKNPTQKLLKTFPVRYKVFDLLMIDNQWLVNEPFIKRRELLNKHFN
NNKFLQIIRSYSDGLSLFNITSQQNHEGIVAKKSNSIYHPGKKHSEWFKIKHLKYLQAYLGGVIVKENQIKSLLLGQKSD
LADYKLNYIGRASTGLTQKELNMLKDFAFKNRVSNSPFGNLSKVDLELADSKESVVFLSPQLKLQVKYTNWTPGGNLRHP
VINGFII
>Mature_327_residues
MEFFQIQAMEPIPRQSVPTGDDWFYQIKWDGIRILTFFDGNSIKLRTKKGFKRTTEYPELNELTKEFGNTTWLLDGEIIV
ANQTDKSDHPKFITTNESCEEVGANFFHVLKRDRTKNPTQKLLKTFPVRYKVFDLLMIDNQWLVNEPFIKRRELLNKHFN
NNKFLQIIRSYSDGLSLFNITSQQNHEGIVAKKSNSIYHPGKKHSEWFKIKHLKYLQAYLGGVIVKENQIKSLLLGQKSD
LADYKLNYIGRASTGLTQKELNMLKDFAFKNRVSNSPFGNLSKVDLELADSKESVVFLSPQLKLQVKYTNWTPGGNLRHP
VINGFII

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 37985; Mature: 37985

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS00697 DNA_LIGASE_A1 ; PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFFQIQAMEPIPRQSVPTGDDWFYQIKWDGIRILTFFDGNSIKLRTKKGFKRTTEYPEL
CCEEEEECCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCEEEEEECCCCCCCCCCCCH
NELTKEFGNTTWLLDGEIIVANQTDKSDHPKFITTNESCEEVGANFFHVLKRDRTKNPTQ
HHHHHHHCCEEEEEECEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCHHH
KLLKTFPVRYKVFDLLMIDNQWLVNEPFIKRRELLNKHFNNNKFLQIIRSYSDGLSLFNI
HHHHHCCCCEEEEEEEEECCCEECCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEE
TSQQNHEGIVAKKSNSIYHPGKKHSEWFKIKHLKYLQAYLGGVIVKENQIKSLLLGQKSD
CCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECHHHHHHHCCCCCC
LADYKLNYIGRASTGLTQKELNMLKDFAFKNRVSNSPFGNLSKVDLELADSKESVVFLSP
CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEECC
QLKLQVKYTNWTPGGNLRHPVINGFII
CEEEEEEEECCCCCCCCCCCCCCCEEC
>Mature Secondary Structure
MEFFQIQAMEPIPRQSVPTGDDWFYQIKWDGIRILTFFDGNSIKLRTKKGFKRTTEYPEL
CCEEEEECCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCEEEEEECCCCCCCCCCCCH
NELTKEFGNTTWLLDGEIIVANQTDKSDHPKFITTNESCEEVGANFFHVLKRDRTKNPTQ
HHHHHHHCCEEEEEECEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCHHH
KLLKTFPVRYKVFDLLMIDNQWLVNEPFIKRRELLNKHFNNNKFLQIIRSYSDGLSLFNI
HHHHHCCCCEEEEEEEEECCCEECCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEE
TSQQNHEGIVAKKSNSIYHPGKKHSEWFKIKHLKYLQAYLGGVIVKENQIKSLLLGQKSD
CCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECHHHHHHHCCCCCC
LADYKLNYIGRASTGLTQKELNMLKDFAFKNRVSNSPFGNLSKVDLELADSKESVVFLSP
CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEECC
QLKLQVKYTNWTPGGNLRHPVINGFII
CEEEEEEEECCCCCCCCCCCCCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]