| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is mod [H]
Identifier: 188528291
GI number: 188528291
Start: 1519775
End: 1521676
Strand: Reverse
Name: mod [H]
Synonym: HPSH_07815
Alternate gene names: 188528291
Gene position: 1521676-1519775 (Counterclockwise)
Preceding gene: 188528292
Following gene: 188528290
Centisome position: 94.6
GC content: 36.33
Gene sequence:
>1902_bases ATGCAAAATAAAGAAATTTATGGAGAAAAAAGCGTTAAGGAAAAAAATTTAGAGGTATTTAATCGTTATTTTCCCGGTTG TTTGAGTGTGGAAAATGATAACAAGCTCACGCTAGATGTGAAAAGATTAAAAGCGTTATTAGGGGATTTTAGCGAGATAA AAGAAGAGGGCTATGGGTTGGATTTTGTGGGTAAGAAAATCGCCTTAAATCAAGCTTTTAAGAAAAATAATAAGATTTTA AAGCCCTTAAACGAATCCACTAGCAAGCACATTCTCATCAAGGGCGATAATTTAGACGCTCTCAAAATCTTAAAACAAAG TTATAGCGAAAAAATCAAAATGATTTACATTGATCCGCCTTACAACACGAAAAACGATAACTTTATTTACAGCGATGATT TCTCGCAATCCAATGAAGAGATTTTAAAAACATTGGATTATTCTAAAGAAAAGCTGGATTATATCAAGAATCTTTTTGGG TCAAAATGCCATAGCGGGTGGCTTAGTTTCATGTATCCTAGATTGTTGCTCGCTAAAGATTTGCTCAAACAAGACGGCGT GATTTTCATTTCTATTGACGATAACCAAGCCGCCCAACTCAAACTTTTATGCGATGAAATTTTTGGGGAGAGGAATTTTG TGGCTGATTTCATTAGAAAAACTAAAAGCACGACTAATGACGCTAAAACGGGTGTCAATTACCAGCATGAGTTTTTGTTT TGTTATGCGAAAAATAAAGAATTTGTCAATCTCTTGGGGGGAGAAAAGAATTTAGAAAATTACAAAAACCCCGATAACGA CCCTAATGGTGCGTGGGTTTCTAGCGATCCTACTGCAAAAAGTGGCGATATAAAAACGGGCTATTTTGTCGTGAAAAATC CCTACACAGGAAAAGTTGATTATCCAACAAATGGTAGGTTTTGGCGTTTTTCTCAAAACACTATGCAAAAACACATTGAT GAAGGGCATATTTGCTTTAAAAAAGAGCATAAAGACAATGAAAGGGGCTTTATTTACAAACGCTATTTGAAAGATTTAAA AACCACGCAAAAAACTTTTGATAGTTTAATATTTAGCGATAATTGTTACATGAATCAAACCGCAACGAAAGAGCTTTTAA GTTTGGGAATGGGAGAGTATTTTACTTATCCAAAAGGCGTAGAATTTATGAAAAAAATCATTCTACATTCAACCACGCCA AACTCAAACGACATCATCTTAGATTTTTTCGCCGGGAGCGGGACAACCGCGCATGCCGTGTTGGAGAGTAATAAGAGCGA TTATCAAAAATTAAGTGAGGGGGGGGGGTCATTTAATGGCTTGAACGCTGCATTTAAAGAAAGGCAGTTCATTCTCGTCC AATTAGATGAAAAAATTGATCCCAAGAAAAACAAAAGCGCGCATGATTTTTGTTTAAACACCCTAAAATCCACCTCCCCG AGCATTTTTGACATCACCGAAGAAAGGATTAAAAGAGCGGGGGCCAAAATCAAAGAAGCTTGCGCGTATTTAGATGTGGG GTTTAGAGCGTTTGAAATCATTGATGATGAAACGAACGATAAAAATCTCAATGAAGCCAATCAAAAGGATTTATTCGCTT ATTCTAACCCAAAAAAAAGAGAAACTCAAACGATTTTAATCAAGCTTTTATGCTGCGAGAATTTAGAGCTCACCACCCCT ATAACTTGCTTGATTGAAAACGCCTTGTATCTGGCTCAAAATACGGCTTTCATTGTGGGGGATATAGAAATGAGCGAAGT TTTAGAAAACTTGAAAGATAAAGGGGTGGAAAAAATTAGCGTGTATATGCCAGCTATCAGTAACGATAGGCTGTGTTTGG AATTGGGCAGTAATTTGTTGGATTTGAAATTAGAGAGTGGCGATTTAAAGATTAGGGGGTAG
Upstream 100 bases:
>100_bases AGTGAAACGGGACTTTTTAAAAACCGCTAGCGTTTCACGGGGAACATTTGAAAATTAAGGTGGAATTGGGTAATTTAAAT CATTTAAAAAAAGGATAGAG
Downstream 100 bases:
>100_bases AGATGAAAATCAAATTCAAACGATTGGATTATCAAGAAAAATGCTTGAATCAAATTTTAGGGGTGTTTAAGGGGATCTAT TTGAGAGAGCCAGAAAATGA
Product: type III DNA modification enzyme (methyltransferase)
Products: NA
Alternate protein names: M.StyLTI; StyLTI methyltransferase [H]
Number of amino acids: Translated: 633; Mature: 633
Protein sequence:
>633_residues MQNKEIYGEKSVKEKNLEVFNRYFPGCLSVENDNKLTLDVKRLKALLGDFSEIKEEGYGLDFVGKKIALNQAFKKNNKIL KPLNESTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSDDFSQSNEEILKTLDYSKEKLDYIKNLFG SKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNQAAQLKLLCDEIFGERNFVADFIRKTKSTTNDAKTGVNYQHEFLF CYAKNKEFVNLLGGEKNLENYKNPDNDPNGAWVSSDPTAKSGDIKTGYFVVKNPYTGKVDYPTNGRFWRFSQNTMQKHID EGHICFKKEHKDNERGFIYKRYLKDLKTTQKTFDSLIFSDNCYMNQTATKELLSLGMGEYFTYPKGVEFMKKIILHSTTP NSNDIILDFFAGSGTTAHAVLESNKSDYQKLSEGGGSFNGLNAAFKERQFILVQLDEKIDPKKNKSAHDFCLNTLKSTSP SIFDITEERIKRAGAKIKEACAYLDVGFRAFEIIDDETNDKNLNEANQKDLFAYSNPKKRETQTILIKLLCCENLELTTP ITCLIENALYLAQNTAFIVGDIEMSEVLENLKDKGVEKISVYMPAISNDRLCLELGSNLLDLKLESGDLKIRG
Sequences:
>Translated_633_residues MQNKEIYGEKSVKEKNLEVFNRYFPGCLSVENDNKLTLDVKRLKALLGDFSEIKEEGYGLDFVGKKIALNQAFKKNNKIL KPLNESTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSDDFSQSNEEILKTLDYSKEKLDYIKNLFG SKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNQAAQLKLLCDEIFGERNFVADFIRKTKSTTNDAKTGVNYQHEFLF CYAKNKEFVNLLGGEKNLENYKNPDNDPNGAWVSSDPTAKSGDIKTGYFVVKNPYTGKVDYPTNGRFWRFSQNTMQKHID EGHICFKKEHKDNERGFIYKRYLKDLKTTQKTFDSLIFSDNCYMNQTATKELLSLGMGEYFTYPKGVEFMKKIILHSTTP NSNDIILDFFAGSGTTAHAVLESNKSDYQKLSEGGGSFNGLNAAFKERQFILVQLDEKIDPKKNKSAHDFCLNTLKSTSP SIFDITEERIKRAGAKIKEACAYLDVGFRAFEIIDDETNDKNLNEANQKDLFAYSNPKKRETQTILIKLLCCENLELTTP ITCLIENALYLAQNTAFIVGDIEMSEVLENLKDKGVEKISVYMPAISNDRLCLELGSNLLDLKLESGDLKIRG >Mature_633_residues MQNKEIYGEKSVKEKNLEVFNRYFPGCLSVENDNKLTLDVKRLKALLGDFSEIKEEGYGLDFVGKKIALNQAFKKNNKIL KPLNESTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYSDDFSQSNEEILKTLDYSKEKLDYIKNLFG SKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNQAAQLKLLCDEIFGERNFVADFIRKTKSTTNDAKTGVNYQHEFLF CYAKNKEFVNLLGGEKNLENYKNPDNDPNGAWVSSDPTAKSGDIKTGYFVVKNPYTGKVDYPTNGRFWRFSQNTMQKHID EGHICFKKEHKDNERGFIYKRYLKDLKTTQKTFDSLIFSDNCYMNQTATKELLSLGMGEYFTYPKGVEFMKKIILHSTTP NSNDIILDFFAGSGTTAHAVLESNKSDYQKLSEGGGSFNGLNAAFKERQFILVQLDEKIDPKKNKSAHDFCLNTLKSTSP SIFDITEERIKRAGAKIKEACAYLDVGFRAFEIIDDETNDKNLNEANQKDLFAYSNPKKRETQTILIKLLCCENLELTTP ITCLIENALYLAQNTAFIVGDIEMSEVLENLKDKGVEKISVYMPAISNDRLCLELGSNLLDLKLESGDLKIRG
Specific function: Binds the system-specific DNA recognition site 5'-CAGAG- 3'. Necessary for restriction and for methylation of A-4 [H]
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002295 - InterPro: IPR002941 - InterPro: IPR002052 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 72212; Mature: 72212
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNKEIYGEKSVKEKNLEVFNRYFPGCLSVENDNKLTLDVKRLKALLGDFSEIKEEGYGL CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEEHHHHHHHHCCHHHHHHHCCCC DFVGKKIALNQAFKKNNKILKPLNESTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPP CCCCHHHHHHHHHHHCCCEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCC YNTKNDNFIYSDDFSQSNEEILKTLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKD CCCCCCCEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH LLKQDGVIFISIDDNQAAQLKLLCDEIFGERNFVADFIRKTKSTTNDAKTGVNYQHEFLF HHHHCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHCCCCCCEEEEE CYAKNKEFVNLLGGEKNLENYKNPDNDPNGAWVSSDPTAKSGDIKTGYFVVKNPYTGKVD EEECCCCHHHHCCCCCCHHHCCCCCCCCCCCEECCCCCCCCCCCEECEEEEECCCCCEEC YPTNGRFWRFSQNTMQKHIDEGHICFKKEHKDNERGFIYKRYLKDLKTTQKTFDSLIFSD CCCCCCEEEECHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC NCYMNQTATKELLSLGMGEYFTYPKGVEFMKKIILHSTTPNSNDIILDFFAGSGTTAHAV CCCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEHE LESNKSDYQKLSEGGGSFNGLNAAFKERQFILVQLDEKIDPKKNKSAHDFCLNTLKSTSP ECCCHHHHHHHHHCCCCCCCCHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCC SIFDITEERIKRAGAKIKEACAYLDVGFRAFEIIDDETNDKNLNEANQKDLFAYSNPKKR CEEHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCH ETQTILIKLLCCENLELTTPITCLIENALYLAQNTAFIVGDIEMSEVLENLKDKGVEKIS HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHEECCCEEEEECCCHHHHHHHHHHCCCEEEE VYMPAISNDRLCLELGSNLLDLKLESGDLKIRG EEECCCCCCCEEHHHCCCEEEEEEECCCEEECC >Mature Secondary Structure MQNKEIYGEKSVKEKNLEVFNRYFPGCLSVENDNKLTLDVKRLKALLGDFSEIKEEGYGL CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEEHHHHHHHHCCHHHHHHHCCCC DFVGKKIALNQAFKKNNKILKPLNESTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPP CCCCHHHHHHHHHHHCCCEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCC YNTKNDNFIYSDDFSQSNEEILKTLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKD CCCCCCCEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH LLKQDGVIFISIDDNQAAQLKLLCDEIFGERNFVADFIRKTKSTTNDAKTGVNYQHEFLF HHHHCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHCCCCCCEEEEE CYAKNKEFVNLLGGEKNLENYKNPDNDPNGAWVSSDPTAKSGDIKTGYFVVKNPYTGKVD EEECCCCHHHHCCCCCCHHHCCCCCCCCCCCEECCCCCCCCCCCEECEEEEECCCCCEEC YPTNGRFWRFSQNTMQKHIDEGHICFKKEHKDNERGFIYKRYLKDLKTTQKTFDSLIFSD CCCCCCEEEECHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC NCYMNQTATKELLSLGMGEYFTYPKGVEFMKKIILHSTTPNSNDIILDFFAGSGTTAHAV CCCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEHE LESNKSDYQKLSEGGGSFNGLNAAFKERQFILVQLDEKIDPKKNKSAHDFCLNTLKSTSP ECCCHHHHHHHHHCCCCCCCCHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCC SIFDITEERIKRAGAKIKEACAYLDVGFRAFEIIDDETNDKNLNEANQKDLFAYSNPKKR CEEHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCH ETQTILIKLLCCENLELTTPITCLIENALYLAQNTAFIVGDIEMSEVLENLKDKGVEKIS HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHEECCCEEEEECCCHHHHHHHHHHCCCEEEE VYMPAISNDRLCLELGSNLLDLKLESGDLKIRG EEECCCCCCCEEHHHCCCEEEEEEECCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8387444; 11677609 [H]