| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is res [H]
Identifier: 188528290
GI number: 188528290
Start: 1516857
End: 1519772
Strand: Reverse
Name: res [H]
Synonym: HPSH_07810
Alternate gene names: 188528290
Gene position: 1519772-1516857 (Counterclockwise)
Preceding gene: 188528291
Following gene: 188528289
Centisome position: 94.48
GC content: 36.04
Gene sequence:
>2916_bases ATGAAAATCAAATTCAAACGATTGGATTATCAAGAAAAATGCTTGAATCAAATTTTAGGGGTGTTTAAGGGGATCTATTT GAGAGAGCCAGAAAATGACGCTCAAAGGATTTCTAACCCTGTTTTTGAAATAGGGGCGATCAAAGATCTTTTATTAGAAA ATATCCAAAATTTGCAATCAGAGCAAAAAATAACCCAGAAAAGCGTGGGGATTGACAAGTCGTTAAACTGCGATATTTTA ATGGAAACAGGCACCGGGAAGACCTTTTGCTTTTTGGAAGGCGTTTATGCCTTGCACCAAAACTACCATTTGTCAAAATT TATCGTTTTAGTGCCAAGCAACGCCATTAAATTAGGGGTTTTAAAGAGCGTTGAAATCACCAGAGAATTTTTTAAAAGCG AGTATTCTACGCATTTGGAAAGCTATGAAGATATAAGGAGCTTTATTCTAGCGAGCAATCACAAATGCTGCGTGTTGGTG ATGACTTTTTCTGCCTTCAATAAAGAGGGTAATGTTATTAATAAATCATGTTTAGAAAACACGAATCTATTCAATGGCGC AAAAAGTTACATGCAAGCTTTAGCCAGTATCCACCCGGTAGTGATCATGGACGAACCGCACCGATTTTTAGGCGATAAAA CAAAAAAATATTTGGAACAATTAAACGCTTTAATCACGCTCAGGTTTGGGGCGACTTTTAAAGATGATTATAAGAATTTG ATTTATGCGCTAGATAGCAAAAAAGCGTTTGATTGCGCCCTAGTGAAAAGCATTAGCGTGGCGTCTGTGGGGGAGAGTAA CGAGTATTTTTTAGAGCTTAAAGGGGTTGTAAAGATACAAAACGACTATGAAGCTGCAATTAACTACACGAATTTAGAAA ATAAAACTCAAAGCGTCAAGGTCAAAAAGCACGATAATTTAGGCGCGCTAACTCAAATCAGCGCTTTAGAAGATTACATT GTAGAAAACATCACTAAAACTGAGGTTCGTTTTCTCAATGGCTTTAATTTGTTACTGGATCAAAAAGGGCCTTTTTCTCA TCTTTTAGAGGGCGAGCAAGAAGTGATGCTGAAAGAAGCGATAAAAAGCCATTTTGAAAGAGAAGAAGGGCTTTTTAAAA AGGGGATTAAAGCCTTGTGCATGGTGTTTATTAGCGGGGTGAATAGCTATTTAAGCGAGAATGAAAAGCCGGCTAAATTA GCCCTTTTATTTGAAAAACTCTACCAGCAAAAGCTTGAAGAAGTCTTAAAAAAAGATGATTTAGATGAAAATTATAGAGC GTATTTAGAACGCACCAAAGACAATATTCAAAAAGTGCATGGAGGGTATTTTGCTAAAAGCAAGAAAGAGAGCGATGAAG CCCAAGTGATCGCGCTCATTTTAAAAGAAAAAGAAAAATTGCTGAGTTTTGATTCCGATCTCAGGTTTATCTTTTCGCAA TGGGCGTTGCAAGAGGGGTGGGATAACCCTAATGTGATGACGATTTGCAAATTAGCCCCTAGCCATTCCAATATCACTAA ATTGCAACAAATCGGTAGGGGGTTAAGGCTCGCTGTGAATGATAAGGGCGAACGCATCACTAAAGAGCATGCTGATTTTG ATTTTGTCAATGAATTGGTGGTGATCGTGCCGCAAGTTGAGGGGGATTTTGTGGGAGCGATCCAGCAAGAGATAAGCGAA CATAGCTTGATTAAACAAGCATTTAGTGCAGAAGAGTTAGAAAAAAGCGGCATTGTTGGAAAAGGGTATTACGGGTTTTT ATTGGAAACATTAGAGGGTTTGGGTTTTGGAGAAAAAACAGATGATGAAAACTTTAAACTCACTCTCAATCAAAACGAAT TTTTAGAAAAAGAGCCAGAACTTGAAAAATTAAAAGATAAGAAATACCTGAATCTTGAAAAATTAAAATATTTTTTAAAA GATCGTTTAGTGGGCCATTCTAGAGTGGGGAACAAAAACGAGCGAAAGAGTGAAAAAATCAAAATCAATAAAGAAAATTT TAAAAAATTTGAAACCTTATGGGAGAGTTTGAATCATCAAGCCCGGATCGCTTATGCCATTGATAGCGAGAGCTTGATTG ATGAGATTGTAACAAAGATCAACGCTTCTTTTAATGTCAAGTCAAAAATCGTTTCGGTTACGACTCATAAAAAAGTAGAA ACTATGGGAAATGACGCCAAAACAGAGAGTTTTGAGCAAAAAAGCGCATGCGTGTGGAGCTTGCATGAATTTATCAGCAC CTTGTCTAATAAGGTGAAATTGAGTTTTAAAAGCGTGGCTAAAGTGTTGGAAAACATTGATGAAAACAAGTTTGAGCTAA TTAAAAAAAACGAACAAGAGAGCTTAAGGCGTTTAGAAGAGCTGTTTTTGGAAATTATTTATCAAAATATTAAAGATAAA ATTTCCTATCAAATGCGCGAAACGACGGTTAAAAACAGAAAAAACGATGCGTTTTATGATGAAAAAGGGGAAATTAGAGA ATTTTTAGACGGGAGTTTGAGGGGGTATAAATATGAGATTAAAAATTCAAGCATTCAAGAAAAATGCCTGTATGAAAATT TCATGCAAGTGGAGAGCGATATTGAAGAAGACACGATTAAAGAATCTAACGACACTAAAATCATTGTTTTTGGCAAGCTC CCTAGAGTTAAGATCCCGATAGGGTTAAATCAAACTTATAGCCCTGATTTTGGGTATGTGGTTGAAAACAACGATAAAAA AGTGTTGTTAGTGGTAGAAACTAAGGGGGTTGAAAATGAAAGCGAATTGCGCGAAGAAGAAAAGCGGAAAATTTCAACCG CTAAGAAATTTTTTGAAGCTTTAAAAAAGCAAGGCGTGAATATTGAATACAAGACCAAAATTAAAAAAGATCAATTAAGC GCGTTGATTAATGAAGTTTTAAATCGTAAAGATTAG
Upstream 100 bases:
>100_bases ATATGCCAGCTATCAGTAACGATAGGCTGTGTTTGGAATTGGGCAGTAATTTGTTGGATTTGAAATTAGAGAGTGGCGAT TTAAAGATTAGGGGGTAGAG
Downstream 100 bases:
>100_bases AGTTACTTTAATGTTTCACATGGAACAATTTTAAAGAAAAGCGTTTTATTTAAAATTCATGGCGCTTTTGTTATAATCGT TTTTATCCCATTTCAAAGGC
Product: type III restriction enzyme
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 971; Mature: 971
Protein sequence:
>971_residues MKIKFKRLDYQEKCLNQILGVFKGIYLREPENDAQRISNPVFEIGAIKDLLLENIQNLQSEQKITQKSVGIDKSLNCDIL METGTGKTFCFLEGVYALHQNYHLSKFIVLVPSNAIKLGVLKSVEITREFFKSEYSTHLESYEDIRSFILASNHKCCVLV MTFSAFNKEGNVINKSCLENTNLFNGAKSYMQALASIHPVVIMDEPHRFLGDKTKKYLEQLNALITLRFGATFKDDYKNL IYALDSKKAFDCALVKSISVASVGESNEYFLELKGVVKIQNDYEAAINYTNLENKTQSVKVKKHDNLGALTQISALEDYI VENITKTEVRFLNGFNLLLDQKGPFSHLLEGEQEVMLKEAIKSHFEREEGLFKKGIKALCMVFISGVNSYLSENEKPAKL ALLFEKLYQQKLEEVLKKDDLDENYRAYLERTKDNIQKVHGGYFAKSKKESDEAQVIALILKEKEKLLSFDSDLRFIFSQ WALQEGWDNPNVMTICKLAPSHSNITKLQQIGRGLRLAVNDKGERITKEHADFDFVNELVVIVPQVEGDFVGAIQQEISE HSLIKQAFSAEELEKSGIVGKGYYGFLLETLEGLGFGEKTDDENFKLTLNQNEFLEKEPELEKLKDKKYLNLEKLKYFLK DRLVGHSRVGNKNERKSEKIKINKENFKKFETLWESLNHQARIAYAIDSESLIDEIVTKINASFNVKSKIVSVTTHKKVE TMGNDAKTESFEQKSACVWSLHEFISTLSNKVKLSFKSVAKVLENIDENKFELIKKNEQESLRRLEELFLEIIYQNIKDK ISYQMRETTVKNRKNDAFYDEKGEIREFLDGSLRGYKYEIKNSSIQEKCLYENFMQVESDIEEDTIKESNDTKIIVFGKL PRVKIPIGLNQTYSPDFGYVVENNDKKVLLVVETKGVENESELREEEKRKISTAKKFFEALKKQGVNIEYKTKIKKDQLS ALINEVLNRKD
Sequences:
>Translated_971_residues MKIKFKRLDYQEKCLNQILGVFKGIYLREPENDAQRISNPVFEIGAIKDLLLENIQNLQSEQKITQKSVGIDKSLNCDIL METGTGKTFCFLEGVYALHQNYHLSKFIVLVPSNAIKLGVLKSVEITREFFKSEYSTHLESYEDIRSFILASNHKCCVLV MTFSAFNKEGNVINKSCLENTNLFNGAKSYMQALASIHPVVIMDEPHRFLGDKTKKYLEQLNALITLRFGATFKDDYKNL IYALDSKKAFDCALVKSISVASVGESNEYFLELKGVVKIQNDYEAAINYTNLENKTQSVKVKKHDNLGALTQISALEDYI VENITKTEVRFLNGFNLLLDQKGPFSHLLEGEQEVMLKEAIKSHFEREEGLFKKGIKALCMVFISGVNSYLSENEKPAKL ALLFEKLYQQKLEEVLKKDDLDENYRAYLERTKDNIQKVHGGYFAKSKKESDEAQVIALILKEKEKLLSFDSDLRFIFSQ WALQEGWDNPNVMTICKLAPSHSNITKLQQIGRGLRLAVNDKGERITKEHADFDFVNELVVIVPQVEGDFVGAIQQEISE HSLIKQAFSAEELEKSGIVGKGYYGFLLETLEGLGFGEKTDDENFKLTLNQNEFLEKEPELEKLKDKKYLNLEKLKYFLK DRLVGHSRVGNKNERKSEKIKINKENFKKFETLWESLNHQARIAYAIDSESLIDEIVTKINASFNVKSKIVSVTTHKKVE TMGNDAKTESFEQKSACVWSLHEFISTLSNKVKLSFKSVAKVLENIDENKFELIKKNEQESLRRLEELFLEIIYQNIKDK ISYQMRETTVKNRKNDAFYDEKGEIREFLDGSLRGYKYEIKNSSIQEKCLYENFMQVESDIEEDTIKESNDTKIIVFGKL PRVKIPIGLNQTYSPDFGYVVENNDKKVLLVVETKGVENESELREEEKRKISTAKKFFEALKKQGVNIEYKTKIKKDQLS ALINEVLNRKD >Mature_971_residues MKIKFKRLDYQEKCLNQILGVFKGIYLREPENDAQRISNPVFEIGAIKDLLLENIQNLQSEQKITQKSVGIDKSLNCDIL METGTGKTFCFLEGVYALHQNYHLSKFIVLVPSNAIKLGVLKSVEITREFFKSEYSTHLESYEDIRSFILASNHKCCVLV MTFSAFNKEGNVINKSCLENTNLFNGAKSYMQALASIHPVVIMDEPHRFLGDKTKKYLEQLNALITLRFGATFKDDYKNL IYALDSKKAFDCALVKSISVASVGESNEYFLELKGVVKIQNDYEAAINYTNLENKTQSVKVKKHDNLGALTQISALEDYI VENITKTEVRFLNGFNLLLDQKGPFSHLLEGEQEVMLKEAIKSHFEREEGLFKKGIKALCMVFISGVNSYLSENEKPAKL ALLFEKLYQQKLEEVLKKDDLDENYRAYLERTKDNIQKVHGGYFAKSKKESDEAQVIALILKEKEKLLSFDSDLRFIFSQ WALQEGWDNPNVMTICKLAPSHSNITKLQQIGRGLRLAVNDKGERITKEHADFDFVNELVVIVPQVEGDFVGAIQQEISE HSLIKQAFSAEELEKSGIVGKGYYGFLLETLEGLGFGEKTDDENFKLTLNQNEFLEKEPELEKLKDKKYLNLEKLKYFLK DRLVGHSRVGNKNERKSEKIKINKENFKKFETLWESLNHQARIAYAIDSESLIDEIVTKINASFNVKSKIVSVTTHKKVE TMGNDAKTESFEQKSACVWSLHEFISTLSNKVKLSFKSVAKVLENIDENKFELIKKNEQESLRRLEELFLEIIYQNIKDK ISYQMRETTVKNRKNDAFYDEKGEIREFLDGSLRGYKYEIKNSSIQEKCLYENFMQVESDIEEDTIKESNDTKIIVFGKL PRVKIPIGLNQTYSPDFGYVVENNDKKVLLVVETKGVENESELREEEKRKISTAKKFFEALKKQGVNIEYKTKIKKDQLS ALINEVLNRKD
Specific function: This protein cuts the DNA outside of the recognition site. May also act as a helicase involved in unwinding DNA at the cleavage site. Protein only required for restriction but needs the presence of the modification enzyme [H]
COG id: COG3587
COG function: function code V; Restriction endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 VRR-NUC domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006935 - InterPro: IPR014883 [H]
Pfam domain/function: PF04851 ResIII; PF08774 VRR_NUC [H]
EC number: =3.1.21.5 [H]
Molecular weight: Translated: 111738; Mature: 111738
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIKFKRLDYQEKCLNQILGVFKGIYLREPENDAQRISNPVFEIGAIKDLLLENIQNLQS CCEEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH EQKITQKSVGIDKSLNCDILMETGTGKTFCFLEGVYALHQNYHLSKFIVLVPSNAIKLGV HHHHHHHHCCCCCCCCCEEEEECCCCCEEHHHHHHHHHHCCCCEEEEEEEECCCCEEEHH LKSVEITREFFKSEYSTHLESYEDIRSFILASNHKCCVLVMTFSAFNKEGNVINKSCLEN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHCCCCCCCCHHHHCC TNLFNGAKSYMQALASIHPVVIMDEPHRFLGDKTKKYLEQLNALITLRFGATFKDDYKNL CCCHHHHHHHHHHHHHCCCEEEECCCHHHHCHHHHHHHHHHHHEEEEEECCCCHHHHHHH IYALDSKKAFDCALVKSISVASVGESNEYFLELKGVVKIQNDYEAAINYTNLENKTQSVK HHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCHHHHEEECCCCCCCCEEE VKKHDNLGALTQISALEDYIVENITKTEVRFLNGFNLLLDQKGPFSHLLEGEQEVMLKEA EEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEECCCCHHHHHCCHHHHHHHHH IKSHFEREEGLFKKGIKALCMVFISGVNSYLSENEKPAKLALLFEKLYQQKLEEVLKKDD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC LDENYRAYLERTKDNIQKVHGGYFAKSKKESDEAQVIALILKEKEKLLSFDSDLRFIFSQ CCHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH WALQEGWDNPNVMTICKLAPSHSNITKLQQIGRGLRLAVNDKGERITKEHADFDFVNELV HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCHHHHCCEE VIVPQVEGDFVGAIQQEISEHSLIKQAFSAEELEKSGIVGKGYYGFLLETLEGLGFGEKT EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC DDENFKLTLNQNEFLEKEPELEKLKDKKYLNLEKLKYFLKDRLVGHSRVGNKNERKSEKI CCCCEEEEECCCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHE KINKENFKKFETLWESLNHQARIAYAIDSESLIDEIVTKINASFNVKSKIVSVTTHKKVE EECHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHCCCCEEHHHEEEEHHHHHHH TMGNDAKTESFEQKSACVWSLHEFISTLSNKVKLSFKSVAKVLENIDENKFELIKKNEQE HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHCCCCCHHHHHHCCHHH SLRRLEELFLEIIYQNIKDKISYQMRETTVKNRKNDAFYDEKGEIREFLDGSLRGYKYEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEE KNSSIQEKCLYENFMQVESDIEEDTIKESNDTKIIVFGKLPRVKIPIGLNQTYSPDFGYV CCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCEE VENNDKKVLLVVETKGVENESELREEEKRKISTAKKFFEALKKQGVNIEYKTKIKKDQLS EECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH ALINEVLNRKD HHHHHHHCCCC >Mature Secondary Structure MKIKFKRLDYQEKCLNQILGVFKGIYLREPENDAQRISNPVFEIGAIKDLLLENIQNLQS CCEEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH EQKITQKSVGIDKSLNCDILMETGTGKTFCFLEGVYALHQNYHLSKFIVLVPSNAIKLGV HHHHHHHHCCCCCCCCCEEEEECCCCCEEHHHHHHHHHHCCCCEEEEEEEECCCCEEEHH LKSVEITREFFKSEYSTHLESYEDIRSFILASNHKCCVLVMTFSAFNKEGNVINKSCLEN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHCCCCCCCCHHHHCC TNLFNGAKSYMQALASIHPVVIMDEPHRFLGDKTKKYLEQLNALITLRFGATFKDDYKNL CCCHHHHHHHHHHHHHCCCEEEECCCHHHHCHHHHHHHHHHHHEEEEEECCCCHHHHHHH IYALDSKKAFDCALVKSISVASVGESNEYFLELKGVVKIQNDYEAAINYTNLENKTQSVK HHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCHHHHEEECCCCCCCCEEE VKKHDNLGALTQISALEDYIVENITKTEVRFLNGFNLLLDQKGPFSHLLEGEQEVMLKEA EEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEECCCCHHHHHCCHHHHHHHHH IKSHFEREEGLFKKGIKALCMVFISGVNSYLSENEKPAKLALLFEKLYQQKLEEVLKKDD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC LDENYRAYLERTKDNIQKVHGGYFAKSKKESDEAQVIALILKEKEKLLSFDSDLRFIFSQ CCHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH WALQEGWDNPNVMTICKLAPSHSNITKLQQIGRGLRLAVNDKGERITKEHADFDFVNELV HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCHHHHCCEE VIVPQVEGDFVGAIQQEISEHSLIKQAFSAEELEKSGIVGKGYYGFLLETLEGLGFGEKT EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC DDENFKLTLNQNEFLEKEPELEKLKDKKYLNLEKLKYFLKDRLVGHSRVGNKNERKSEKI CCCCEEEEECCCHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHE KINKENFKKFETLWESLNHQARIAYAIDSESLIDEIVTKINASFNVKSKIVSVTTHKKVE EECHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHCCCCEEHHHEEEEHHHHHHH TMGNDAKTESFEQKSACVWSLHEFISTLSNKVKLSFKSVAKVLENIDENKFELIKKNEQE HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHCCCCCHHHHHHCCHHH SLRRLEELFLEIIYQNIKDKISYQMRETTVKNRKNDAFYDEKGEIREFLDGSLRGYKYEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEE KNSSIQEKCLYENFMQVESDIEEDTIKESNDTKIIVFGKLPRVKIPIGLNQTYSPDFGYV CCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCEE VENNDKKVLLVVETKGVENESELREEEKRKISTAKKFFEALKKQGVNIEYKTKIKKDQLS EECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH ALINEVLNRKD HHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10217496; 1587478 [H]