| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
Click here to switch to the map view.
The map label for this gene is 188528226
Identifier: 188528226
GI number: 188528226
Start: 1445403
End: 1445744
Strand: Reverse
Name: 188528226
Synonym: HPSH_07450
Alternate gene names: NA
Gene position: 1445744-1445403 (Counterclockwise)
Preceding gene: 188528227
Following gene: 188528225
Centisome position: 89.88
GC content: 40.35
Gene sequence:
>342_bases ATGAAACGCCTTGCTATCGCGCTCGCTTTGGTATTGGGAGTCGCATGGGGGAAAACCTTGCCTAAGTGGGCGAGAAATTG CTCAAAAGAAGTGCAAATTGAAAAGACCCAAACCAAAGATGAAAAAATTTTAGTGTGTGGGATGAGCGATGTATTGCTTT CGGATATGGATTATAGCTTGTCCTCAGCCAGACAAAACGCCTTAGAGAAAGTGATGGAAGCTTTCAAGGAGGATAAAATA GAGATTAAGGCTAGTGAGCTAAAGGCCACTTTTGTTGATACGGATAAAGTTTATGTGCTTCTAAAAATCACTAAGAAACA CATCGCTTTAATGAATGAGTAA
Upstream 100 bases:
>100_bases TATGTCGGTAAAGACAGGGTTTTTGTTTTAGTGGGCTTGGATAAGCAAATTGTGGATAAAGTGCGCGAAGAGTTGGGCAT GGTTAAAAAGTAGGGTTTTA
Downstream 100 bases:
>100_bases GGATTAATAATGAAAAAGATTATTCTTGCATGCCTTATGGCTTTTGTGGGTGCCAATTTAAGCGCAGAGCCTAAGTGGTA TAGCAAGGCCTATAACAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 113; Mature: 113
Protein sequence:
>113_residues MKRLAIALALVLGVAWGKTLPKWARNCSKEVQIEKTQTKDEKILVCGMSDVLLSDMDYSLSSARQNALEKVMEAFKEDKI EIKASELKATFVDTDKVYVLLKITKKHIALMNE
Sequences:
>Translated_113_residues MKRLAIALALVLGVAWGKTLPKWARNCSKEVQIEKTQTKDEKILVCGMSDVLLSDMDYSLSSARQNALEKVMEAFKEDKI EIKASELKATFVDTDKVYVLLKITKKHIALMNE >Mature_113_residues MKRLAIALALVLGVAWGKTLPKWARNCSKEVQIEKTQTKDEKILVCGMSDVLLSDMDYSLSSARQNALEKVMEAFKEDKI EIKASELKATFVDTDKVYVLLKITKKHIALMNE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12759; Mature: 12759
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRLAIALALVLGVAWGKTLPKWARNCSKEVQIEKTQTKDEKILVCGMSDVLLSDMDYSL CHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCCCCCEEEEECCHHHHHHCCCCHH SSARQNALEKVMEAFKEDKIEIKASELKATFVDTDKVYVLLKITKKHIALMNE HHHHHHHHHHHHHHHHHCCEEEEHHHEEEEEECCCCEEEEEEEHHHHHHHCCC >Mature Secondary Structure MKRLAIALALVLGVAWGKTLPKWARNCSKEVQIEKTQTKDEKILVCGMSDVLLSDMDYSL CHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCCCCCEEEEECCHHHHHHCCCCHH SSARQNALEKVMEAFKEDKIEIKASELKATFVDTDKVYVLLKITKKHIALMNE HHHHHHHHHHHHHHHHHCCEEEEHHHEEEEEECCCCEEEEEEEHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA