| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
Click here to switch to the map view.
The map label for this gene is 188528210
Identifier: 188528210
GI number: 188528210
Start: 1432988
End: 1433767
Strand: Reverse
Name: 188528210
Synonym: HPSH_07370
Alternate gene names: NA
Gene position: 1433767-1432988 (Counterclockwise)
Preceding gene: 188528224
Following gene: 188528209
Centisome position: 89.13
GC content: 38.72
Gene sequence:
>780_bases ATGGCGTTTTGGCATAAAAGATTAGCGGTGGGTTGTTGTATCGTTTTATTTTCATGCATGATGAACGCTAATAACATTCA GATTACTAGAGACGATCCACCCCTTGATCCAGTGCTCCCTGCATGGGTTTATTCTGTTGCGTTATTGAAAGTGTATTTTA GCGATGGGACTTATAAAGAAGGCTACGCGACTTTGCTCAAAAACGGGCGTTATATCGCTTCTTCTGAAACGCTTTATTCT AATGGCTTATACCCTAAAACGATTTTAGCCAAAATGCAAGACAGCAGCGCTAAAGAGCTGATTTGTATAGCCAGCTTACG CCTTGAAGCGATGGATAGGGATCAAGGGCTTTCGCTTTTAAAAACTGCCGATTTTAGAGACGATTATTGCCATAAAAGAG AAGAGAGCTATTACCATGCAAGGATTTACACAAAATACGCTCAAACTTTTCATTCAAATCCTTATACCAATCAAAAAACA CCCAATTCTGATCTCTACTACCCGGCGTTGAATGAGGAGAATTCTTTTTCTATACAGATAACGGATATTTCTGTGGCTGA ACTTTTGAAATCTAAAAAGTTTCTTTCGCTTGATGCTTCTTTTAAAAAGGGGAGCGTGTTGTGGGGAGGGAGGCCTTATT TTAGCGAAGTGGGGGAGTTTATGGGAATGGCTAGTAGCACTTTAGAAAATCAAGAAAGTTTGGTGATTATCCCTAAAGAA AAGATCGTGCAATTTTTAAGCGATCTAAAAAATCAAAATATTTTCCCAAACATTCCCTAA
Upstream 100 bases:
>100_bases TGTCATTCAAATGATCTATTATAGCAATAAATTAAAACAAATGGTATTTTGGCCGATAGTGTGGCAGGATACTTTTGAAA TTTAAGCGGTAAGTTTGATA
Downstream 100 bases:
>100_bases ATTTAAGCAAACCTTAAGCTTTGTATGACTATACTTTCATTTCCTTGTTTCAGCAAGGGCTTTTAAAAAGCTGCTTGATA ACTTGCAAGGATAGCTGATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MAFWHKRLAVGCCIVLFSCMMNANNIQITRDDPPLDPVLPAWVYSVALLKVYFSDGTYKEGYATLLKNGRYIASSETLYS NGLYPKTILAKMQDSSAKELICIASLRLEAMDRDQGLSLLKTADFRDDYCHKREESYYHARIYTKYAQTFHSNPYTNQKT PNSDLYYPALNEENSFSIQITDISVAELLKSKKFLSLDASFKKGSVLWGGRPYFSEVGEFMGMASSTLENQESLVIIPKE KIVQFLSDLKNQNIFPNIP
Sequences:
>Translated_259_residues MAFWHKRLAVGCCIVLFSCMMNANNIQITRDDPPLDPVLPAWVYSVALLKVYFSDGTYKEGYATLLKNGRYIASSETLYS NGLYPKTILAKMQDSSAKELICIASLRLEAMDRDQGLSLLKTADFRDDYCHKREESYYHARIYTKYAQTFHSNPYTNQKT PNSDLYYPALNEENSFSIQITDISVAELLKSKKFLSLDASFKKGSVLWGGRPYFSEVGEFMGMASSTLENQESLVIIPKE KIVQFLSDLKNQNIFPNIP >Mature_258_residues AFWHKRLAVGCCIVLFSCMMNANNIQITRDDPPLDPVLPAWVYSVALLKVYFSDGTYKEGYATLLKNGRYIASSETLYSN GLYPKTILAKMQDSSAKELICIASLRLEAMDRDQGLSLLKTADFRDDYCHKREESYYHARIYTKYAQTFHSNPYTNQKTP NSDLYYPALNEENSFSIQITDISVAELLKSKKFLSLDASFKKGSVLWGGRPYFSEVGEFMGMASSTLENQESLVIIPKEK IVQFLSDLKNQNIFPNIP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29479; Mature: 29348
Theoretical pI: Translated: 7.39; Mature: 7.39
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00152 ATPASE_ALPHA_BETA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFWHKRLAVGCCIVLFSCMMNANNIQITRDDPPLDPVLPAWVYSVALLKVYFSDGTYKE CCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH GYATLLKNGRYIASSETLYSNGLYPKTILAKMQDSSAKELICIASLRLEAMDRDQGLSLL HHHHHHHCCEEEECCCCHHCCCCCHHHHHHHHCCCCCHHEEEHHHHHHHHHCCCCCCHHH KTADFRDDYCHKREESYYHARIYTKYAQTFHSNPYTNQKTPNSDLYYPALNEENSFSIQI HHCCCCHHHHHHHHCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEEE TDISVAELLKSKKFLSLDASFKKGSVLWGGRPYFSEVGEFMGMASSTLENQESLVIIPKE ECCHHHHHHHCCCEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEECHH KIVQFLSDLKNQNIFPNIP HHHHHHHHHHCCCCCCCCC >Mature Secondary Structure AFWHKRLAVGCCIVLFSCMMNANNIQITRDDPPLDPVLPAWVYSVALLKVYFSDGTYKE CHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH GYATLLKNGRYIASSETLYSNGLYPKTILAKMQDSSAKELICIASLRLEAMDRDQGLSLL HHHHHHHCCEEEECCCCHHCCCCCHHHHHHHHCCCCCHHEEEHHHHHHHHHCCCCCCHHH KTADFRDDYCHKREESYYHARIYTKYAQTFHSNPYTNQKTPNSDLYYPALNEENSFSIQI HHCCCCHHHHHHHHCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEEE TDISVAELLKSKKFLSLDASFKKGSVLWGGRPYFSEVGEFMGMASSTLENQESLVIIPKE ECCHHHHHHHCCCEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEECHH KIVQFLSDLKNQNIFPNIP HHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA