Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188528201

Identifier: 188528201

GI number: 188528201

Start: 1427349

End: 1428023

Strand: Direct

Name: 188528201

Synonym: HPSH_07325

Alternate gene names: NA

Gene position: 1427349-1428023 (Clockwise)

Preceding gene: 188528199

Following gene: 188528202

Centisome position: 88.74

GC content: 34.67

Gene sequence:

>675_bases
ATGAAAGCCTTTAGGGTTGATTTAGATAACGAAAAAAATCAAAATATTTTAAAACCCAGCGTGCACCCTTTTAATCACCA
AGCCCATCAAGTTAATGAAGTGGCCAAAAAGATTTATGAATTGATTAAAGGCGCTAAACATCCTAACGATGGCATCATCT
TAAACCACAATGAAATTAAAGAAGCCTTTTTTAGCCCGTTCAAACCGCAGCTAAAAAACACTCAAGTGTTCCTATCGCAT
TCGCATGCGGATAGAAATAAGGCTTTAAAGGTTAAAGACTATTTGGAAAGCGAAACAAATCACAGAGTATTTATAGACTC
GCTTTTTTGGGATTATAAAGACGATGTCTTAAACGAATTGGCAAAATACGATGATACAAGCAAAATTAAAGACGCTTTCA
CGCTCATTCTCAGAGAATCTTTACAAGACATGATTGAAGAATGCCCTTATTTCGTGTTTTTAGAAAGTAAAAACAGCGTT
TCCAATCAAGGGCTATCGTGCATCACTTATTCAGCATGGATTTATGAAGAATTAAAAATCGCTCATTCTATTAGCAGCAA
GAGTTGCTTAACTATAGCGATGGAGAGCTTTCAAATTAGTTATGATATATCGCCATTTTTAAAAAGTCTAAAGACTATAA
CCCTTAGCGAACTATCACACATAATCAATTCATAG

Upstream 100 bases:

>100_bases
TTAAGCTAATTCTAGTATAATCAAAAGATTTTAAAGGAAACTTAAAATCGTGTTTGTAAAGGTTTAAGAATTTCATGAAA
ATATTAAGGAAAATTATATC

Downstream 100 bases:

>100_bases
GAACAAGCATGCTTTTTAAAACTTATCAAAAATTATTGGGTGCGAGCTGTTTAGCGTTGTATCTGGTGGGCTGTGGGAGT
GGCGGTGGCGGTGAATCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKAFRVDLDNEKNQNILKPSVHPFNHQAHQVNEVAKKIYELIKGAKHPNDGIILNHNEIKEAFFSPFKPQLKNTQVFLSH
SHADRNKALKVKDYLESETNHRVFIDSLFWDYKDDVLNELAKYDDTSKIKDAFTLILRESLQDMIEECPYFVFLESKNSV
SNQGLSCITYSAWIYEELKIAHSISSKSCLTIAMESFQISYDISPFLKSLKTITLSELSHIINS

Sequences:

>Translated_224_residues
MKAFRVDLDNEKNQNILKPSVHPFNHQAHQVNEVAKKIYELIKGAKHPNDGIILNHNEIKEAFFSPFKPQLKNTQVFLSH
SHADRNKALKVKDYLESETNHRVFIDSLFWDYKDDVLNELAKYDDTSKIKDAFTLILRESLQDMIEECPYFVFLESKNSV
SNQGLSCITYSAWIYEELKIAHSISSKSCLTIAMESFQISYDISPFLKSLKTITLSELSHIINS
>Mature_224_residues
MKAFRVDLDNEKNQNILKPSVHPFNHQAHQVNEVAKKIYELIKGAKHPNDGIILNHNEIKEAFFSPFKPQLKNTQVFLSH
SHADRNKALKVKDYLESETNHRVFIDSLFWDYKDDVLNELAKYDDTSKIKDAFTLILRESLQDMIEECPYFVFLESKNSV
SNQGLSCITYSAWIYEELKIAHSISSKSCLTIAMESFQISYDISPFLKSLKTITLSELSHIINS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25889; Mature: 25889

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAFRVDLDNEKNQNILKPSVHPFNHQAHQVNEVAKKIYELIKGAKHPNDGIILNHNEIK
CCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHH
EAFFSPFKPQLKNTQVFLSHSHADRNKALKVKDYLESETNHRVFIDSLFWDYKDDVLNEL
HHHHCCCCCCCCCCEEEEECCCCCCCCCEEHHHHHCCCCCCEEEEHHHHHCCHHHHHHHH
AKYDDTSKIKDAFTLILRESLQDMIEECPYFVFLESKNSVSNQGLSCITYSAWIYEELKI
HHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHHH
AHSISSKSCLTIAMESFQISYDISPFLKSLKTITLSELSHIINS
HHHCCCCCHHEEEHHHEEEEECHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKAFRVDLDNEKNQNILKPSVHPFNHQAHQVNEVAKKIYELIKGAKHPNDGIILNHNEIK
CCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHH
EAFFSPFKPQLKNTQVFLSHSHADRNKALKVKDYLESETNHRVFIDSLFWDYKDDVLNEL
HHHHCCCCCCCCCCEEEEECCCCCCCCCEEHHHHHCCCCCCEEEEHHHHHCCHHHHHHHH
AKYDDTSKIKDAFTLILRESLQDMIEECPYFVFLESKNSVSNQGLSCITYSAWIYEELKI
HHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHHH
AHSISSKSCLTIAMESFQISYDISPFLKSLKTITLSELSHIINS
HHHCCCCCHHEEEHHHEEEEECHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA