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The map label for this gene is trbB [H]

Identifier: 188528186

GI number: 188528186

Start: 1412525

End: 1413439

Strand: Reverse

Name: trbB [H]

Synonym: HPSH_07250

Alternate gene names: 188528186

Gene position: 1413439-1412525 (Counterclockwise)

Preceding gene: 188528187

Following gene: 188528185

Centisome position: 87.87

GC content: 42.4

Gene sequence:

>915_bases
TTGGAAACTTTACAAACCCATAGAGTTTTACAAGCCCTAATTGGCCATTTTACCCCCTTTTTAGAAAGCGGGATCACAGA
GCTGATAATCAATACCGAGCAGGAGCTTTGGCTTTATAAAATCAATAACACACGAGAAAAAAGAGGGCATGCGCTTTTTG
ATAAGGCGTTTTTGCTGATATTTTGCGAGCAATTGGCTAGTTTTAGGGGGTTGTTTTTTGATGAAGAGCACCCCACTTTA
AATTGCTCTATCCCTTTCACGCGCTATAGGGTGAGCGCGAACCACTTTAGCATCACCACAAACAATCAAATCACGCTCAA
TATCCGTGTGCCTAGGCTTAAGCCCTTAAGTTTAGAGGATTTCACTTTCAAAACAAGCAATCCAAAAGGTTTGAAAGATT
TAGCGCTTAAAGGGCATAACATTCTCATTAGCGGGGAGACTTCAAGCGGTAAAACAAGCTTATTGAACGCTCTTTTAGAT
TGCGTCAATAAAGATGAAAGGGTGGTGAGCGTTGAAGACAGCCAAGAATTGGATTTAAAAGCGTTTAGTAATTGCGTGGG
GCTTTTAGTGGGCAAGCAAGAAAACACGCGCTTTAATTATGAAGACGCTCTCAATATGGCCATGCGCTTAAACCCGGACA
GGCTCATTGTGGGCGAGATTGACACCAGGAATGCAGCGCTCTTTTTGCGTTTAGGAAACACCGGGCATAAGGGCATGCTC
TCAACCATTCACGCTAATAGCGCTCAAAACACTTTAGAAGCCCTTTCGTTGAATTTAAGCATGCGTTATACGCATTCTTT
GGATAAGGATTTAATGCGAGCGTATTTTAGAAGCGCGATTGATGTGATCGTGCATGTGAATAGGATCAACAATGAGCGCC
AAATCGCTGAAGTCTTATGGACTAAAGAGCTTTAA

Upstream 100 bases:

>100_bases
AAATGCCCCAGGTGTTGGCGTTTTAAAAGCGAGCTAGAAAACGCCCCTTGCAAGCGTTGCGAACAGGTTTTAAAAGAACG
ATGATAAAAGGATAGGGCTT

Downstream 100 bases:

>100_bases
ATGCCCCTAAAATCCTTAAAAAACCGCTTGAATCAGCATTTTGAACTATCGCCTCGCTACGGGAGCGTGAAAAAAATCAT
GCCCAATATCGTTTATGCGG

Product: type IV secretion system ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
METLQTHRVLQALIGHFTPFLESGITELIINTEQELWLYKINNTREKRGHALFDKAFLLIFCEQLASFRGLFFDEEHPTL
NCSIPFTRYRVSANHFSITTNNQITLNIRVPRLKPLSLEDFTFKTSNPKGLKDLALKGHNILISGETSSGKTSLLNALLD
CVNKDERVVSVEDSQELDLKAFSNCVGLLVGKQENTRFNYEDALNMAMRLNPDRLIVGEIDTRNAALFLRLGNTGHKGML
STIHANSAQNTLEALSLNLSMRYTHSLDKDLMRAYFRSAIDVIVHVNRINNERQIAEVLWTKEL

Sequences:

>Translated_304_residues
METLQTHRVLQALIGHFTPFLESGITELIINTEQELWLYKINNTREKRGHALFDKAFLLIFCEQLASFRGLFFDEEHPTL
NCSIPFTRYRVSANHFSITTNNQITLNIRVPRLKPLSLEDFTFKTSNPKGLKDLALKGHNILISGETSSGKTSLLNALLD
CVNKDERVVSVEDSQELDLKAFSNCVGLLVGKQENTRFNYEDALNMAMRLNPDRLIVGEIDTRNAALFLRLGNTGHKGML
STIHANSAQNTLEALSLNLSMRYTHSLDKDLMRAYFRSAIDVIVHVNRINNERQIAEVLWTKEL
>Mature_304_residues
METLQTHRVLQALIGHFTPFLESGITELIINTEQELWLYKINNTREKRGHALFDKAFLLIFCEQLASFRGLFFDEEHPTL
NCSIPFTRYRVSANHFSITTNNQITLNIRVPRLKPLSLEDFTFKTSNPKGLKDLALKGHNILISGETSSGKTSLLNALLD
CVNKDERVVSVEDSQELDLKAFSNCVGLLVGKQENTRFNYEDALNMAMRLNPDRLIVGEIDTRNAALFLRLGNTGHKGML
STIHANSAQNTLEALSLNLSMRYTHSLDKDLMRAYFRSAIDVIVHVNRINNERQIAEVLWTKEL

Specific function: Unknown

COG id: COG0630

COG function: function code NU; Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=144, Percent_Identity=31.9444444444444, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789723, Length=145, Percent_Identity=33.7931034482759, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 34592; Mature: 34592

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METLQTHRVLQALIGHFTPFLESGITELIINTEQELWLYKINNTREKRGHALFDKAFLLI
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCHHHCCCHHHHHHHHHH
FCEQLASFRGLFFDEEHPTLNCSIPFTRYRVSANHFSITTNNQITLNIRVPRLKPLSLED
HHHHHHHHCCCEECCCCCEEEEECCCEEEEEECCEEEEEECCEEEEEEECCCCCCCCCCC
FTFKTSNPKGLKDLALKGHNILISGETSSGKTSLLNALLDCVNKDERVVSVEDSQELDLK
EEEECCCCCCCHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
AFSNCVGLLVGKQENTRFNYEDALNMAMRLNPDRLIVGEIDTRNAALFLRLGNTGHKGML
HHHHHHEEEEECCCCCCCCHHHHHHHHEEECCCEEEEEECCCCCEEEEEEECCCCCCCCE
STIHANSAQNTLEALSLNLSMRYTHSLDKDLMRAYFRSAIDVIVHVNRINNERQIAEVLW
EEEECCCHHHHHHHHEEEEEEEEHHHCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHH
TKEL
HCCC
>Mature Secondary Structure
METLQTHRVLQALIGHFTPFLESGITELIINTEQELWLYKINNTREKRGHALFDKAFLLI
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCHHHCCCHHHHHHHHHH
FCEQLASFRGLFFDEEHPTLNCSIPFTRYRVSANHFSITTNNQITLNIRVPRLKPLSLED
HHHHHHHHCCCEECCCCCEEEEECCCEEEEEECCEEEEEECCEEEEEEECCCCCCCCCCC
FTFKTSNPKGLKDLALKGHNILISGETSSGKTSLLNALLDCVNKDERVVSVEDSQELDLK
EEEECCCCCCCHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
AFSNCVGLLVGKQENTRFNYEDALNMAMRLNPDRLIVGEIDTRNAALFLRLGNTGHKGML
HHHHHHEEEEECCCCCCCCHHHHHHHHEEECCCEEEEEECCCCCEEEEEEECCCCCCCCE
STIHANSAQNTLEALSLNLSMRYTHSLDKDLMRAYFRSAIDVIVHVNRINNERQIAEVLW
EEEECCCHHHHHHHHEEEEEEEEHHHCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHH
TKEL
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]