| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528148
Identifier: 188528148
GI number: 188528148
Start: 1365096
End: 1365590
Strand: Reverse
Name: 188528148
Synonym: HPSH_07035
Alternate gene names: NA
Gene position: 1365590-1365096 (Counterclockwise)
Preceding gene: 188528149
Following gene: 188528147
Centisome position: 84.9
GC content: 38.38
Gene sequence:
>495_bases ATGCATGAGTTGGTTTTAAGATCCCAAGCTTTAGGGTTTGAAACGCGCTTAGTCCAATGCGATTTATCGTTCTCTTATGA AAGGTTCATCTCTAAAACCACACGCTCTTTAGCGGTGTTAGAAGAATTTGATTGGTTGGGTTCTGGCTTTGATTTTTCAC GCTTGAATGTTGAAAATGACACTCTGGAATTGCTCAAAGCGCTGTATTTTAAATTAGAAAAATTAGAGAGCCTGCTTTTA AAAGGAAATTTACTTGAATTAGAGCAAAAGGATCGCATCACTGCTTTAGGGCATGGGTTAATTTGTATCAAAAAATCAGG CCTGATAGCGCCTCAAACTTATTACGGGCGTTGTGTGTTAGAGGGGAAAATCCTAGCCTTTTTTGGCGTGGCTAGGGATA AAAATTTTTTAGAAATCACTCGCATGCATGCCTTAGACATTAAGCGTTATGATTCTTTCATTGTCCATAGCGAAAGGAAA GGCTTGAAATTATGA
Upstream 100 bases:
>100_bases GCTAGAGATTATAAAAACATTCCTAAAGCCTTTTTTGTGAGTAATGGCTATTTGGGGGTGGTGTTTTTTATTTTTATTGT CCTTGATGTGGGGTTTAAGC
Downstream 100 bases:
>100_bases ACGGGAGCAATCATGTTATCTTCTAATGATTTGTTTATGGTCGTTTTAGGGGCGATTTTATTGGTGTTGGTGTGCTTGGT GGGGTATTTGTATCTTAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 164; Mature: 164
Protein sequence:
>164_residues MHELVLRSQALGFETRLVQCDLSFSYERFISKTTRSLAVLEEFDWLGSGFDFSRLNVENDTLELLKALYFKLEKLESLLL KGNLLELEQKDRITALGHGLICIKKSGLIAPQTYYGRCVLEGKILAFFGVARDKNFLEITRMHALDIKRYDSFIVHSERK GLKL
Sequences:
>Translated_164_residues MHELVLRSQALGFETRLVQCDLSFSYERFISKTTRSLAVLEEFDWLGSGFDFSRLNVENDTLELLKALYFKLEKLESLLL KGNLLELEQKDRITALGHGLICIKKSGLIAPQTYYGRCVLEGKILAFFGVARDKNFLEITRMHALDIKRYDSFIVHSERK GLKL >Mature_164_residues MHELVLRSQALGFETRLVQCDLSFSYERFISKTTRSLAVLEEFDWLGSGFDFSRLNVENDTLELLKALYFKLEKLESLLL KGNLLELEQKDRITALGHGLICIKKSGLIAPQTYYGRCVLEGKILAFFGVARDKNFLEITRMHALDIKRYDSFIVHSERK GLKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18907; Mature: 18907
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHELVLRSQALGFETRLVQCDLSFSYERFISKTTRSLAVLEEFDWLGSGFDFSRLNVEND CCCHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCH TLELLKALYFKLEKLESLLLKGNLLELEQKDRITALGHGLICIKKSGLIAPQTYYGRCVL HHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEECCCCEEEEECCCCCCCCCCCCEEEE EGKILAFFGVARDKNFLEITRMHALDIKRYDSFIVHSERKGLKL CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCC >Mature Secondary Structure MHELVLRSQALGFETRLVQCDLSFSYERFISKTTRSLAVLEEFDWLGSGFDFSRLNVEND CCCHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCH TLELLKALYFKLEKLESLLLKGNLLELEQKDRITALGHGLICIKKSGLIAPQTYYGRCVL HHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEECCCCEEEEECCCCCCCCCCCCEEEE EGKILAFFGVARDKNFLEITRMHALDIKRYDSFIVHSERKGLKL CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA